RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 MUC12Q9UKN1 5478 aa5.33□□□□□ -1.56
CCDC88C-202ENST00000334448 MT1LQ93083 61 aa5.33□□□□□ -1.56
CCDC88C-202ENST00000334448 KRTAP19-3Q7Z4W3 81 aa5.27□□□□□ -1.57
CCDC88C-202ENST00000334448 MDN1Q9NU22 5596 aa5.25□□□□□ -1.57
CCDC88C-202ENST00000334448 MT1GP13640 62 aa5.22□□□□□ -1.57
CCDC88C-202ENST00000334448 LCE5AQ5TCM9 118 aa5.21□□□□□ -1.58
CCDC88C-202ENST00000334448 LCE3CQ5T5A8 94 aa5.2□□□□□ -1.58
CCDC88C-202ENST00000334448 LCE1AQ5T7P2 110 aa5.2□□□□□ -1.58
CCDC88C-202ENST00000334448 SPRR5A0A1B0GTR4 108 aa5.18□□□□□ -1.58
CCDC88C-202ENST00000334448 MT1MQ8N339 61 aa5.14□□□□□ -1.59
CCDC88C-202ENST00000334448 SPRR2EP22531 72 aa5.12□□□□□ -1.59
CCDC88C-202ENST00000334448 SPRR2BP35325 72 aa5.12□□□□□ -1.59
CCDC88C-202ENST00000334448 SPRR2AP35326 72 aa5.12□□□□□ -1.59
CCDC88C-202ENST00000334448 NEBP20929 6669 aa5.09□□□□□ -1.59
CCDC88C-202ENST00000334448 LOC100996750A0A140TA64 210 aa5.06□□□□□ -1.6
CCDC88C-202ENST00000334448 KRTAP4-6Q9BYQ5 205 aa5.06□□□□□ -1.6
CCDC88C-202ENST00000334448 KRTAP4-7Q9BYR0 210 aa5.06□□□□□ -1.6
CCDC88C-202ENST00000334448 KRTAP4-3Q9BYR4 195 aa4.95□□□□□ -1.62
CCDC88C-202ENST00000334448 SPRR2DP22532 72 aa4.93□□□□□ -1.62
CCDC88C-202ENST00000334448 KRTAP9-6A8MVA2 160 aa4.91□□□□□ -1.62
CCDC88C-202ENST00000334448 LUZP6Q538Z0 58 aa4.84□□□□□ -1.63
CCDC88C-202ENST00000334448 DSTQ03001 7570 aaKnown RBP4.82□□□□□ -1.64
CCDC88C-202ENST00000334448 KRTAP20-1Q3LI63 56 aa4.81□□□□□ -1.64
CCDC88C-202ENST00000334448 LCE3BQ5TA77 95 aa4.75□□□□□ -1.65
CCDC88C-202ENST00000334448 KRTAP5-5Q701N2 237 aaPredicted RBP4.7□□□□□ -1.66
CCDC88C-202ENST00000334448 KRTAP2-3P0C7H8 128 aa4.69□□□□□ -1.66
CCDC88C-202ENST00000334448 KRTAP2-4Q9BYR9 128 aa4.69□□□□□ -1.66
CCDC88C-202ENST00000334448 NDUFAF8A1L188 74 aa4.63□□□□□ -1.67
CCDC88C-202ENST00000334448 KRTAP2-2Q9BYT5 123 aa4.58□□□□□ -1.68
CCDC88C-202ENST00000334448 KRTAP2-1Q9BYU5 128 aa4.58□□□□□ -1.68
CCDC88C-202ENST00000334448 MT1AP04731 61 aa4.56□□□□□ -1.68
CCDC88C-202ENST00000334448 KRTAP5-4Q6L8H1 288 aa4.54□□□□□ -1.68
CCDC88C-202ENST00000334448 KRTAP6-1Q3LI64 71 aa4.46□□□□□ -1.7
CCDC88C-202ENST00000334448 LCE4AQ5TA78 99 aa4.46□□□□□ -1.7
CCDC88C-202ENST00000334448 SYNE1Q8NF91 8797 aaKnown RBP4.42□□□□□ -1.7
CCDC88C-202ENST00000334448 KRTAP12-4P60329 112 aa4.33□□□□□ -1.72
CCDC88C-202ENST00000334448 KRTAP9-4Q9BYQ2 154 aa4.31□□□□□ -1.72
CCDC88C-202ENST00000334448 HMCN1Q96RW7 5635 aa4.29□□□□□ -1.72
CCDC88C-202ENST00000334448 LCE1DQ5T752 114 aa4.24□□□□□ -1.73
CCDC88C-202ENST00000334448 MT4P47944 62 aa4.23□□□□□ -1.73
CCDC88C-202ENST00000334448 KRTAP4-9Q9BYQ8 210 aa4.21□□□□□ -1.74
CCDC88C-202ENST00000334448 KRTAP20-2Q3LI61 65 aa4.2□□□□□ -1.74
CCDC88C-202ENST00000334448 KRTAP9-9Q9BYP9 154 aa4.17□□□□□ -1.74
CCDC88C-202ENST00000334448 MT3P25713 68 aa4.12□□□□□ -1.75
CCDC88C-202ENST00000334448 KRTAP6-2Q3LI66 62 aa4.12□□□□□ -1.75
CCDC88C-202ENST00000334448 KRTAP5-2Q701N4 177 aa4.12□□□□□ -1.75
CCDC88C-202ENST00000334448 KRTAP4-12Q9BQ66 201 aa4.09□□□□□ -1.75
CCDC88C-202ENST00000334448 KRTAP5-3Q6L8H2 238 aa4.08□□□□□ -1.76
CCDC88C-202ENST00000334448 A0A0A0MQY5 61 aa4.07□□□□□ -1.76
CCDC88C-202ENST00000334448 GPR98Q8WXG9 6306 aa4.03□□□□□ -1.76
CCDC88C-202ENST00000334448 KRTAP4-2Q9BYR5 136 aa3.91□□□□□ -1.78
CCDC88C-202ENST00000334448 INE1O15225 51 aa3.9□□□□□ -1.79
CCDC88C-202ENST00000334448 LCE3DQ9BYE3 92 aa3.88□□□□□ -1.79
CCDC88C-202ENST00000334448 AHNAK2Q8IVF2 5795 aa3.87□□□□□ -1.79
CCDC88C-202ENST00000334448 H3BS24 57 aa3.83□□□□□ -1.8
CCDC88C-202ENST00000334448 KRTAP5-10Q6L8G5 202 aa3.8□□□□□ -1.8
CCDC88C-202ENST00000334448 LCE3EQ5T5B0 92 aa3.77□□□□□ -1.81
CCDC88C-202ENST00000334448 OBSCNQ5VST9 7968 aa3.76□□□□□ -1.81
CCDC88C-202ENST00000334448 KRTAP4-11Q9BYQ6 195 aa3.68□□□□□ -1.82
CCDC88C-202ENST00000334448 LCE1EQ5T753 118 aa3.67□□□□□ -1.82
CCDC88C-202ENST00000334448 KRTAP5-7Q6L8G8 165 aa3.67□□□□□ -1.82
CCDC88C-202ENST00000334448 KRTAP5-1Q6L8H4 278 aa3.54□□□□□ -1.84
CCDC88C-202ENST00000334448 KRTAP5-8O75690 187 aa3.53□□□□□ -1.84
CCDC88C-202ENST00000334448 MUC5ACP98088 5654 aa3.52□□□□□ -1.85
CCDC88C-202ENST00000334448 LCE1CQ5T751 118 aa3.39□□□□□ -1.87
CCDC88C-202ENST00000334448 LCE1BQ5T7P3 118 aa3.39□□□□□ -1.87
CCDC88C-202ENST00000334448 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.21□□□□□ -1.9
CCDC88C-202ENST00000334448 PRM1P04553 51 aa3.2□□□□□ -1.9
CCDC88C-202ENST00000334448 MUC5BQ9HC84 5762 aaPredicted RBP3.15□□□□□ -1.9
CCDC88C-202ENST00000334448 AHNAKQ09666 5890 aaKnown RBP3.11□□□□□ -1.91
CCDC88C-202ENST00000334448 KRTAP5-11Q6L8G4 156 aa3.02□□□□□ -1.93
CCDC88C-202ENST00000334448 KRTAP21-2Q3LI59 83 aa2.96□□□□□ -1.94
CCDC88C-202ENST00000334448 LCE1FQ5T754 118 aa2.76□□□□□ -1.97
CCDC88C-202ENST00000334448 PHGR1C9JFL3 82 aa2.57□□□□□ -2
CCDC88C-202ENST00000334448 KRTAP4-4Q9BYR3 166 aa2.52□□□□□ -2.01
CCDC88C-202ENST00000334448 MUC19Q7Z5P9 8384 aa2.22□□□□□ -2.05
CCDC88C-202ENST00000334448 KRTAP21-1Q3LI58 79 aa2□□□□□ -2.09
CCDC88C-202ENST00000334448 MUC16Q8WXI7 14507 aa1.62□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 82.1 ms