RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 FCGBPQ9Y6R7 5405 aaPredicted RBP6.29□□□□□ -1.4
CLSTN3-202ENST00000331148 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.28□□□□□ -1.4
CLSTN3-202ENST00000331148 KRTAP4-7Q9BYR0 210 aa6.25□□□□□ -1.41
CLSTN3-202ENST00000331148 KRTAP19-7Q3SYF9 63 aa6.21□□□□□ -1.42
CLSTN3-202ENST00000331148 KRTAP6-3Q3LI67 103 aa6.11□□□□□ -1.43
CLSTN3-202ENST00000331148 KRTAP9-7A8MTY7 169 aa6.1□□□□□ -1.43
CLSTN3-202ENST00000331148 KRTAP19-4Q3LI73 84 aa6.1□□□□□ -1.43
CLSTN3-202ENST00000331148 MT1LQ93083 61 aa6.07□□□□□ -1.44
CLSTN3-202ENST00000331148 MT1EP04732 61 aa6.04□□□□□ -1.44
CLSTN3-202ENST00000331148 MACF1Q9UPN3 7388 aaKnown RBP6□□□□□ -1.45
CLSTN3-202ENST00000331148 KRTAP5-9P26371 169 aa5.97□□□□□ -1.45
CLSTN3-202ENST00000331148 SPRR2FQ96RM1 72 aa5.87□□□□□ -1.47
CLSTN3-202ENST00000331148 MUC12Q9UKN1 5478 aa5.84□□□□□ -1.48
CLSTN3-202ENST00000331148 SYNE2Q8WXH0 6885 aaKnown RBP5.81□□□□□ -1.48
CLSTN3-202ENST00000331148 LOC100996750A0A140TA64 210 aa5.8□□□□□ -1.48
CLSTN3-202ENST00000331148 KRTAP19-3Q7Z4W3 81 aa5.8□□□□□ -1.48
CLSTN3-202ENST00000331148 KRTAP12-4P60329 112 aa5.78□□□□□ -1.48
CLSTN3-202ENST00000331148 MT1GP13640 62 aa5.76□□□□□ -1.49
CLSTN3-202ENST00000331148 KRTAP4-3Q9BYR4 195 aa5.73□□□□□ -1.49
CLSTN3-202ENST00000331148 MT1MQ8N339 61 aa5.69□□□□□ -1.5
CLSTN3-202ENST00000331148 LCE5AQ5TCM9 118 aa5.68□□□□□ -1.5
CLSTN3-202ENST00000331148 LCE1AQ5T7P2 110 aa5.65□□□□□ -1.5
CLSTN3-202ENST00000331148 SPRR2EP22531 72 aa5.62□□□□□ -1.51
CLSTN3-202ENST00000331148 SPRR2BP35325 72 aa5.62□□□□□ -1.51
CLSTN3-202ENST00000331148 SPRR2AP35326 72 aa5.62□□□□□ -1.51
CLSTN3-202ENST00000331148 NEBP20929 6669 aa5.61□□□□□ -1.51
CLSTN3-202ENST00000331148 MDN1Q9NU22 5596 aa5.57□□□□□ -1.52
CLSTN3-202ENST00000331148 SPRR2DP22532 72 aa5.44□□□□□ -1.54
CLSTN3-202ENST00000331148 KRTAP20-1Q3LI63 56 aa5.44□□□□□ -1.54
CLSTN3-202ENST00000331148 LCE3BQ5TA77 95 aa5.41□□□□□ -1.54
CLSTN3-202ENST00000331148 DSTQ03001 7570 aaKnown RBP5.4□□□□□ -1.55
CLSTN3-202ENST00000331148 KRTAP4-9Q9BYQ8 210 aa5.38□□□□□ -1.55
CLSTN3-202ENST00000331148 MT1AP04731 61 aa5.32□□□□□ -1.56
CLSTN3-202ENST00000331148 KRTAP2-2Q9BYT5 123 aa5.29□□□□□ -1.56
CLSTN3-202ENST00000331148 LCE3DQ9BYE3 92 aa5.21□□□□□ -1.58
CLSTN3-202ENST00000331148 PRM1P04553 51 aa5.19□□□□□ -1.58
CLSTN3-202ENST00000331148 KRTAP5-5Q701N2 237 aaPredicted RBP5.19□□□□□ -1.58
CLSTN3-202ENST00000331148 LCE3EQ5T5B0 92 aa5.18□□□□□ -1.58
CLSTN3-202ENST00000331148 KRTAP6-1Q3LI64 71 aa5.16□□□□□ -1.58
CLSTN3-202ENST00000331148 SYNE1Q8NF91 8797 aaKnown RBP5.11□□□□□ -1.59
CLSTN3-202ENST00000331148 LCE4AQ5TA78 99 aa4.98□□□□□ -1.61
CLSTN3-202ENST00000331148 KRTAP6-2Q3LI66 62 aa4.9□□□□□ -1.63
CLSTN3-202ENST00000331148 KRTAP5-4Q6L8H1 288 aa4.89□□□□□ -1.63
CLSTN3-202ENST00000331148 KRTAP9-4Q9BYQ2 154 aa4.8□□□□□ -1.64
CLSTN3-202ENST00000331148 LCE1DQ5T752 114 aa4.68□□□□□ -1.66
CLSTN3-202ENST00000331148 MT4P47944 62 aa4.63□□□□□ -1.67
CLSTN3-202ENST00000331148 KRTAP4-6Q9BYQ5 205 aa4.62□□□□□ -1.67
CLSTN3-202ENST00000331148 MT3P25713 68 aa4.58□□□□□ -1.68
CLSTN3-202ENST00000331148 KRTAP20-2Q3LI61 65 aa4.52□□□□□ -1.69
CLSTN3-202ENST00000331148 HMCN1Q96RW7 5635 aa4.47□□□□□ -1.69
CLSTN3-202ENST00000331148 KRTAP5-2Q701N4 177 aa4.4□□□□□ -1.71
CLSTN3-202ENST00000331148 KRTAP5-3Q6L8H2 238 aa4.39□□□□□ -1.71
CLSTN3-202ENST00000331148 OBSCNQ5VST9 7968 aa4.36□□□□□ -1.71
CLSTN3-202ENST00000331148 AHNAK2Q8IVF2 5795 aa4.27□□□□□ -1.73
CLSTN3-202ENST00000331148 GPR98Q8WXG9 6306 aa4.22□□□□□ -1.73
CLSTN3-202ENST00000331148 KRTAP5-10Q6L8G5 202 aa4.21□□□□□ -1.73
CLSTN3-202ENST00000331148 KRTAP9-9Q9BYP9 154 aa4.19□□□□□ -1.74
CLSTN3-202ENST00000331148 LCE1EQ5T753 118 aa4.12□□□□□ -1.75
CLSTN3-202ENST00000331148 KRTAP5-7Q6L8G8 165 aa4.07□□□□□ -1.76
CLSTN3-202ENST00000331148 KRTAP4-11Q9BYQ6 195 aa4.04□□□□□ -1.76
CLSTN3-202ENST00000331148 MUC5ACP98088 5654 aa3.91□□□□□ -1.78
CLSTN3-202ENST00000331148 KRTAP5-8O75690 187 aa3.88□□□□□ -1.79
CLSTN3-202ENST00000331148 KRTAP4-12Q9BQ66 201 aa3.81□□□□□ -1.8
CLSTN3-202ENST00000331148 KRTAP5-1Q6L8H4 278 aa3.79□□□□□ -1.8
CLSTN3-202ENST00000331148 LCE1BQ5T7P3 118 aa3.73□□□□□ -1.81
CLSTN3-202ENST00000331148 LCE1CQ5T751 118 aa3.69□□□□□ -1.82
CLSTN3-202ENST00000331148 KRTAP4-2Q9BYR5 136 aa3.67□□□□□ -1.82
CLSTN3-202ENST00000331148 LCE1FQ5T754 118 aa3.64□□□□□ -1.83
CLSTN3-202ENST00000331148 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.48□□□□□ -1.85
CLSTN3-202ENST00000331148 AHNAKQ09666 5890 aaKnown RBP3.44□□□□□ -1.86
CLSTN3-202ENST00000331148 MUC5BQ9HC84 5762 aaPredicted RBP3.41□□□□□ -1.86
CLSTN3-202ENST00000331148 KRTAP21-1Q3LI58 79 aa3.31□□□□□ -1.88
CLSTN3-202ENST00000331148 KRTAP21-2Q3LI59 83 aa3.31□□□□□ -1.88
CLSTN3-202ENST00000331148 KRTAP5-11Q6L8G4 156 aa3.25□□□□□ -1.89
CLSTN3-202ENST00000331148 KRTAP4-4Q9BYR3 166 aa3.05□□□□□ -1.92
CLSTN3-202ENST00000331148 MUC19Q7Z5P9 8384 aa2.96□□□□□ -1.93
CLSTN3-202ENST00000331148 PHGR1C9JFL3 82 aa2.77□□□□□ -1.97
CLSTN3-202ENST00000331148 MUC16Q8WXI7 14507 aa1.77□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 72.6 ms