RNA–Protein interactions for RNA: ENST00000317716.13

CDHR3-201, Transcript of cadherin related family member 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CDHR3, Length 3,813 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDHR3-201ENST00000317716 KRTAP9-6A0A140TA67 174 aa2.72□□□□□ -1.97
CDHR3-201ENST00000317716 MUC12Q9UKN1 5478 aa2.69□□□□□ -1.98
CDHR3-201ENST00000317716 SPRR2FQ96RM1 72 aa2.66□□□□□ -1.98
CDHR3-201ENST00000317716 KRTAP19-6Q3LI70 58 aa2.62□□□□□ -1.99
CDHR3-201ENST00000317716 KRTAP12-4P60329 112 aa2.6□□□□□ -1.99
CDHR3-201ENST00000317716 MT1GP13640 62 aa2.57□□□□□ -2
CDHR3-201ENST00000317716 MDN1Q9NU22 5596 aa2.56□□□□□ -2
CDHR3-201ENST00000317716 LCE3BQ5TA77 95 aa2.55□□□□□ -2
CDHR3-201ENST00000317716 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.55□□□□□ -2
CDHR3-201ENST00000317716 KRTAP9-6A8MVA2 160 aa2.54□□□□□ -2
CDHR3-201ENST00000317716 LOC100996750A0A140TA64 210 aa2.53□□□□□ -2
CDHR3-201ENST00000317716 KRTAP9-7A8MTY7 169 aa2.52□□□□□ -2.01
CDHR3-201ENST00000317716 KRTAP4-3Q9BYR4 195 aa2.51□□□□□ -2.01
CDHR3-201ENST00000317716 SPRR2EP22531 72 aa2.51□□□□□ -2.01
CDHR3-201ENST00000317716 SPRR2BP35325 72 aa2.51□□□□□ -2.01
CDHR3-201ENST00000317716 SPRR2AP35326 72 aa2.51□□□□□ -2.01
CDHR3-201ENST00000317716 MT1LQ93083 61 aa2.45□□□□□ -2.02
CDHR3-201ENST00000317716 KRTAP4-9Q9BYQ8 210 aa2.43□□□□□ -2.02
CDHR3-201ENST00000317716 KRTAP19-7Q3SYF9 63 aa2.42□□□□□ -2.02
CDHR3-201ENST00000317716 MT1EP04732 61 aa2.41□□□□□ -2.02
CDHR3-201ENST00000317716 SPRR2DP22532 72 aa2.4□□□□□ -2.03
CDHR3-201ENST00000317716 KRTAP2-3P0C7H8 128 aa2.39□□□□□ -2.03
CDHR3-201ENST00000317716 KRTAP2-4Q9BYR9 128 aa2.39□□□□□ -2.03
CDHR3-201ENST00000317716 KRTAP2-1Q9BYU5 128 aa2.39□□□□□ -2.03
CDHR3-201ENST00000317716 KRTAP4-6Q9BYQ5 205 aa2.39□□□□□ -2.03
CDHR3-201ENST00000317716 KRTAP6-3Q3LI67 103 aa2.34□□□□□ -2.03
CDHR3-201ENST00000317716 KRTAP19-3Q7Z4W3 81 aa2.33□□□□□ -2.04
CDHR3-201ENST00000317716 LCE3DQ9BYE3 92 aa2.33□□□□□ -2.04
CDHR3-201ENST00000317716 PRM1P04553 51 aa2.32□□□□□ -2.04
CDHR3-201ENST00000317716 LCE1AQ5T7P2 110 aa2.31□□□□□ -2.04
CDHR3-201ENST00000317716 NEBP20929 6669 aa2.29□□□□□ -2.04
CDHR3-201ENST00000317716 LCE3EQ5T5B0 92 aa2.29□□□□□ -2.04
CDHR3-201ENST00000317716 MT1MQ8N339 61 aa2.28□□□□□ -2.04
CDHR3-201ENST00000317716 KRTAP19-4Q3LI73 84 aa2.24□□□□□ -2.05
CDHR3-201ENST00000317716 KRTAP5-9P26371 169 aa2.23□□□□□ -2.05
CDHR3-201ENST00000317716 MT4P47944 62 aa2.23□□□□□ -2.05
CDHR3-201ENST00000317716 KRTAP20-1Q3LI63 56 aa2.22□□□□□ -2.05
CDHR3-201ENST00000317716 LCE5AQ5TCM9 118 aa2.21□□□□□ -2.06
CDHR3-201ENST00000317716 KRTAP6-1Q3LI64 71 aa2.14□□□□□ -2.07
CDHR3-201ENST00000317716 MUC19Q7Z5P9 8384 aa2.1□□□□□ -2.07
CDHR3-201ENST00000317716 KRTAP2-2Q9BYT5 123 aa2.1□□□□□ -2.07
CDHR3-201ENST00000317716 KRTAP6-2Q3LI66 62 aa2.09□□□□□ -2.07
CDHR3-201ENST00000317716 KRTAP4-12Q9BQ66 201 aa2.05□□□□□ -2.08
CDHR3-201ENST00000317716 MT1AP04731 61 aa2.04□□□□□ -2.08
CDHR3-201ENST00000317716 LCE1DQ5T752 114 aa2□□□□□ -2.09
CDHR3-201ENST00000317716 KRTAP9-9Q9BYP9 154 aa2□□□□□ -2.09
CDHR3-201ENST00000317716 KRTAP9-4Q9BYQ2 154 aa2□□□□□ -2.09
CDHR3-201ENST00000317716 HMCN1Q96RW7 5635 aa1.99□□□□□ -2.09
CDHR3-201ENST00000317716 MT3P25713 68 aa1.99□□□□□ -2.09
CDHR3-201ENST00000317716 KRTAP5-5Q701N2 237 aaPredicted RBP1.93□□□□□ -2.1
CDHR3-201ENST00000317716 LCE1BQ5T7P3 118 aa1.93□□□□□ -2.1
CDHR3-201ENST00000317716 GPR98Q8WXG9 6306 aa1.91□□□□□ -2.1
CDHR3-201ENST00000317716 LCE4AQ5TA78 99 aa1.91□□□□□ -2.1
CDHR3-201ENST00000317716 LCE1EQ5T753 118 aa1.86□□□□□ -2.11
CDHR3-201ENST00000317716 KRTAP20-2Q3LI61 65 aa1.86□□□□□ -2.11
CDHR3-201ENST00000317716 KRTAP4-2Q9BYR5 136 aa1.83□□□□□ -2.12
CDHR3-201ENST00000317716 KRTAP4-11Q9BYQ6 195 aa1.82□□□□□ -2.12
CDHR3-201ENST00000317716 MUC5ACP98088 5654 aa1.81□□□□□ -2.12
CDHR3-201ENST00000317716 KRTAP5-4Q6L8H1 288 aa1.78□□□□□ -2.12
CDHR3-201ENST00000317716 AHNAK2Q8IVF2 5795 aa1.76□□□□□ -2.13
CDHR3-201ENST00000317716 KRTAP5-3Q6L8H2 238 aa1.71□□□□□ -2.14
CDHR3-201ENST00000317716 MUC5BQ9HC84 5762 aaPredicted RBP1.63□□□□□ -2.15
CDHR3-201ENST00000317716 KRTAP4-4Q9BYR3 166 aa1.58□□□□□ -2.16
CDHR3-201ENST00000317716 KRTAP5-8O75690 187 aa1.58□□□□□ -2.16
CDHR3-201ENST00000317716 KRTAP5-2Q701N4 177 aa1.57□□□□□ -2.16
CDHR3-201ENST00000317716 KRTAP5-10Q6L8G5 202 aa1.55□□□□□ -2.16
CDHR3-201ENST00000317716 KRTAP5-7Q6L8G8 165 aa1.49□□□□□ -2.17
CDHR3-201ENST00000317716 LCE1CQ5T751 118 aa1.46□□□□□ -2.18
CDHR3-201ENST00000317716 LCE1FQ5T754 118 aa1.46□□□□□ -2.18
CDHR3-201ENST00000317716 KRTAP5-1Q6L8H4 278 aa1.46□□□□□ -2.18
CDHR3-201ENST00000317716 AHNAKQ09666 5890 aaKnown RBP1.42□□□□□ -2.18
CDHR3-201ENST00000317716 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.24□□□□□ -2.21
CDHR3-201ENST00000317716 KRTAP21-2Q3LI59 83 aa1.21□□□□□ -2.22
CDHR3-201ENST00000317716 KRTAP5-11Q6L8G4 156 aa1.18□□□□□ -2.22
CDHR3-201ENST00000317716 KRTAP21-1Q3LI58 79 aa1.14□□□□□ -2.23
CDHR3-201ENST00000317716 PHGR1C9JFL3 82 aa1.1□□□□□ -2.23
CDHR3-201ENST00000317716 MUC16Q8WXI7 14507 aa0.74□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 498 ms