RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 R4GN34 69 aa3.01□□□□□ -1.93
CNOT4-201ENST00000315544 MACF1Q9UPN3 7388 aaKnown RBP2.98□□□□□ -1.93
CNOT4-201ENST00000315544 KRTAP19-5Q3LI72 72 aa2.98□□□□□ -1.93
CNOT4-201ENST00000315544 KRTAP2-3P0C7H8 128 aa2.97□□□□□ -1.93
CNOT4-201ENST00000315544 KRTAP2-4Q9BYR9 128 aa2.97□□□□□ -1.93
CNOT4-201ENST00000315544 KRTAP2-1Q9BYU5 128 aa2.97□□□□□ -1.93
CNOT4-201ENST00000315544 KRTAP4-8A0A0G2JLE6 195 aa2.96□□□□□ -1.94
CNOT4-201ENST00000315544 K7ERS5 55 aa2.95□□□□□ -1.94
CNOT4-201ENST00000315544 LCE5AQ5TCM9 118 aa2.94□□□□□ -1.94
CNOT4-201ENST00000315544 LCE1DQ5T752 114 aa2.89□□□□□ -1.95
CNOT4-201ENST00000315544 KRTAP4-7Q9BYR0 210 aa2.86□□□□□ -1.95
CNOT4-201ENST00000315544 LCE1AQ5T7P2 110 aa2.86□□□□□ -1.95
CNOT4-201ENST00000315544 CAMK2N1Q7Z7J9 78 aa2.84□□□□□ -1.95
CNOT4-201ENST00000315544 MUC12Q9UKN1 5478 aa2.82□□□□□ -1.96
CNOT4-201ENST00000315544 KRTAP4-9Q9BYQ8 210 aa2.82□□□□□ -1.96
CNOT4-201ENST00000315544 LCE4AQ5TA78 99 aa2.82□□□□□ -1.96
CNOT4-201ENST00000315544 TNP1P09430 55 aa2.81□□□□□ -1.96
CNOT4-201ENST00000315544 LCE3CQ5T5A8 94 aa2.81□□□□□ -1.96
CNOT4-201ENST00000315544 SYNE2Q8WXH0 6885 aaKnown RBP2.8□□□□□ -1.96
CNOT4-201ENST00000315544 MT1EP04732 61 aa2.79□□□□□ -1.96
CNOT4-201ENST00000315544 KRTAP12-3P60328 96 aa2.78□□□□□ -1.96
CNOT4-201ENST00000315544 MT1LQ93083 61 aa2.77□□□□□ -1.97
CNOT4-201ENST00000315544 KRTAP4-2Q9BYR5 136 aa2.73□□□□□ -1.97
CNOT4-201ENST00000315544 KRTAP5-4Q6L8H1 288 aa2.73□□□□□ -1.97
CNOT4-201ENST00000315544 KRTAP4-11Q9BYQ6 195 aa2.72□□□□□ -1.97
CNOT4-201ENST00000315544 MDN1Q9NU22 5596 aa2.71□□□□□ -1.97
CNOT4-201ENST00000315544 KRTAP5-5Q701N2 237 aaPredicted RBP2.7□□□□□ -1.98
CNOT4-201ENST00000315544 KRTAP20-1Q3LI63 56 aa2.64□□□□□ -1.99
CNOT4-201ENST00000315544 PRO2289Q9P1D8 64 aa2.62□□□□□ -1.99
CNOT4-201ENST00000315544 KRTAP2-2Q9BYT5 123 aa2.6□□□□□ -1.99
CNOT4-201ENST00000315544 KRTAP19-3Q7Z4W3 81 aa2.57□□□□□ -2
CNOT4-201ENST00000315544 INE1O15225 51 aa2.54□□□□□ -2
CNOT4-201ENST00000315544 MT1MQ8N339 61 aa2.54□□□□□ -2
CNOT4-201ENST00000315544 KRTAP4-3Q9BYR4 195 aa2.54□□□□□ -2
CNOT4-201ENST00000315544 SPRR2EP22531 72 aa2.5□□□□□ -2.01
CNOT4-201ENST00000315544 SPRR2BP35325 72 aa2.5□□□□□ -2.01
CNOT4-201ENST00000315544 SPRR2AP35326 72 aa2.5□□□□□ -2.01
CNOT4-201ENST00000315544 MT1GP13640 62 aa2.5□□□□□ -2.01
CNOT4-201ENST00000315544 LCE1FQ5T754 118 aa2.5□□□□□ -2.01
CNOT4-201ENST00000315544 SPRR2FQ96RM1 72 aa2.47□□□□□ -2.01
CNOT4-201ENST00000315544 KRTAP5-2Q701N4 177 aa2.46□□□□□ -2.02
CNOT4-201ENST00000315544 KRTAP5-3Q6L8H2 238 aa2.45□□□□□ -2.02
CNOT4-201ENST00000315544 SPRR2DP22532 72 aa2.44□□□□□ -2.02
CNOT4-201ENST00000315544 MT1AP04731 61 aa2.43□□□□□ -2.02
CNOT4-201ENST00000315544 KRTAP5-10Q6L8G5 202 aa2.41□□□□□ -2.02
CNOT4-201ENST00000315544 OBSCNQ5VST9 7968 aa2.4□□□□□ -2.03
CNOT4-201ENST00000315544 AHNAK2Q8IVF2 5795 aa2.38□□□□□ -2.03
CNOT4-201ENST00000315544 DSTQ03001 7570 aaKnown RBP2.37□□□□□ -2.03
CNOT4-201ENST00000315544 KRTAP5-7Q6L8G8 165 aa2.36□□□□□ -2.03
CNOT4-201ENST00000315544 MT3P25713 68 aa2.34□□□□□ -2.03
CNOT4-201ENST00000315544 HMCN1Q96RW7 5635 aa2.34□□□□□ -2.03
CNOT4-201ENST00000315544 KRTAP6-1Q3LI64 71 aa2.34□□□□□ -2.04
CNOT4-201ENST00000315544 KRTAP20-2Q3LI61 65 aa2.28□□□□□ -2.05
CNOT4-201ENST00000315544 GPR98Q8WXG9 6306 aa2.27□□□□□ -2.05
CNOT4-201ENST00000315544 SYNE1Q8NF91 8797 aaKnown RBP2.25□□□□□ -2.05
CNOT4-201ENST00000315544 KRTAP5-8O75690 187 aa2.15□□□□□ -2.07
CNOT4-201ENST00000315544 MUC5BQ9HC84 5762 aaPredicted RBP2.13□□□□□ -2.07
CNOT4-201ENST00000315544 KRTAP12-4P60329 112 aa2.09□□□□□ -2.08
CNOT4-201ENST00000315544 KRTAP5-1Q6L8H4 278 aa2.07□□□□□ -2.08
CNOT4-201ENST00000315544 MUC19Q7Z5P9 8384 aa2.06□□□□□ -2.08
CNOT4-201ENST00000315544 LCE3EQ5T5B0 92 aa2.04□□□□□ -2.08
CNOT4-201ENST00000315544 LCE1EQ5T753 118 aa2□□□□□ -2.09
CNOT4-201ENST00000315544 AHNAKQ09666 5890 aaKnown RBP1.99□□□□□ -2.09
CNOT4-201ENST00000315544 KRTAP6-2Q3LI66 62 aa1.97□□□□□ -2.09
CNOT4-201ENST00000315544 MT4P47944 62 aa1.96□□□□□ -2.1
CNOT4-201ENST00000315544 MUC5ACP98088 5654 aa1.94□□□□□ -2.1
CNOT4-201ENST00000315544 LCE3DQ9BYE3 92 aa1.93□□□□□ -2.1
CNOT4-201ENST00000315544 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.9□□□□□ -2.1
CNOT4-201ENST00000315544 PRM1P04553 51 aa1.87□□□□□ -2.11
CNOT4-201ENST00000315544 LCE1CQ5T751 118 aa1.85□□□□□ -2.11
CNOT4-201ENST00000315544 LCE1BQ5T7P3 118 aa1.85□□□□□ -2.11
CNOT4-201ENST00000315544 KRTAP5-11Q6L8G4 156 aa1.82□□□□□ -2.12
CNOT4-201ENST00000315544 KRTAP21-2Q3LI59 83 aa1.73□□□□□ -2.13
CNOT4-201ENST00000315544 KRTAP21-1Q3LI58 79 aa1.56□□□□□ -2.16
CNOT4-201ENST00000315544 KRTAP4-4Q9BYR3 166 aa1.49□□□□□ -2.17
CNOT4-201ENST00000315544 PHGR1C9JFL3 82 aa1.44□□□□□ -2.18
CNOT4-201ENST00000315544 MUC16Q8WXI7 14507 aa1.1□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 6.3 ms