RNA–Protein interactions for RNA: ENST00000308354.11

PDLIM2-202, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,236 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-202ENST00000308354 INE1O15225 51 aa7.85□□□□□ -1.15
PDLIM2-202ENST00000308354 SPRR2FQ96RM1 72 aa7.79□□□□□ -1.16
PDLIM2-202ENST00000308354 SYNE2Q8WXH0 6885 aaKnown RBP7.79□□□□□ -1.16
PDLIM2-202ENST00000308354 KRTAP9-6A8MVA2 160 aa7.71□□□□□ -1.18
PDLIM2-202ENST00000308354 KRTAP19-4Q3LI73 84 aa7.68□□□□□ -1.18
PDLIM2-202ENST00000308354 KRTAP19-3Q7Z4W3 81 aa7.68□□□□□ -1.18
PDLIM2-202ENST00000308354 KRTAP4-3Q9BYR4 195 aa7.6□□□□□ -1.19
PDLIM2-202ENST00000308354 MT1GP13640 62 aa7.59□□□□□ -1.19
PDLIM2-202ENST00000308354 MT1MQ8N339 61 aa7.58□□□□□ -1.2
PDLIM2-202ENST00000308354 LCE5AQ5TCM9 118 aa7.51□□□□□ -1.21
PDLIM2-202ENST00000308354 KRTAP9-6A0A140TA67 174 aa7.5□□□□□ -1.21
PDLIM2-202ENST00000308354 KRTAP5-9P26371 169 aa7.5□□□□□ -1.21
PDLIM2-202ENST00000308354 MDN1Q9NU22 5596 aa7.49□□□□□ -1.21
PDLIM2-202ENST00000308354 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.42□□□□□ -1.22
PDLIM2-202ENST00000308354 DSTQ03001 7570 aaKnown RBP7.4□□□□□ -1.22
PDLIM2-202ENST00000308354 LOC100996750A0A140TA64 210 aa7.4□□□□□ -1.23
PDLIM2-202ENST00000308354 LCE1AQ5T7P2 110 aa7.37□□□□□ -1.23
PDLIM2-202ENST00000308354 SPRR2EP22531 72 aa7.3□□□□□ -1.24
PDLIM2-202ENST00000308354 SPRR2BP35325 72 aa7.3□□□□□ -1.24
PDLIM2-202ENST00000308354 SPRR2AP35326 72 aa7.3□□□□□ -1.24
PDLIM2-202ENST00000308354 KRTAP2-3P0C7H8 128 aa7.24□□□□□ -1.25
PDLIM2-202ENST00000308354 KRTAP2-4Q9BYR9 128 aa7.24□□□□□ -1.25
PDLIM2-202ENST00000308354 KRTAP2-1Q9BYU5 128 aa7.24□□□□□ -1.25
PDLIM2-202ENST00000308354 KRTAP6-3Q3LI67 103 aa7.24□□□□□ -1.25
PDLIM2-202ENST00000308354 SPRR2DP22532 72 aa7.01□□□□□ -1.29
PDLIM2-202ENST00000308354 KRTAP9-7A8MTY7 169 aa6.93□□□□□ -1.3
PDLIM2-202ENST00000308354 KRTAP5-5Q701N2 237 aaPredicted RBP6.77□□□□□ -1.33
PDLIM2-202ENST00000308354 NEBP20929 6669 aa6.76□□□□□ -1.33
PDLIM2-202ENST00000308354 KRTAP6-1Q3LI64 71 aa6.74□□□□□ -1.33
PDLIM2-202ENST00000308354 LCE3BQ5TA77 95 aa6.71□□□□□ -1.34
PDLIM2-202ENST00000308354 MT1AP04731 61 aa6.68□□□□□ -1.34
PDLIM2-202ENST00000308354 SYNE1Q8NF91 8797 aaKnown RBP6.62□□□□□ -1.35
PDLIM2-202ENST00000308354 KRTAP4-9Q9BYQ8 210 aa6.4□□□□□ -1.39
PDLIM2-202ENST00000308354 KRTAP9-4Q9BYQ2 154 aa6.35□□□□□ -1.39
PDLIM2-202ENST00000308354 KRTAP5-4Q6L8H1 288 aa6.31□□□□□ -1.4
PDLIM2-202ENST00000308354 KRTAP12-4P60329 112 aa6.3□□□□□ -1.4
PDLIM2-202ENST00000308354 MT4P47944 62 aa6.18□□□□□ -1.42
PDLIM2-202ENST00000308354 KRTAP2-2Q9BYT5 123 aa6.18□□□□□ -1.42
PDLIM2-202ENST00000308354 KRTAP6-2Q3LI66 62 aa6.17□□□□□ -1.42
PDLIM2-202ENST00000308354 KRTAP4-6Q9BYQ5 205 aa6.15□□□□□ -1.42
PDLIM2-202ENST00000308354 KRTAP20-1Q3LI63 56 aa6.13□□□□□ -1.43
PDLIM2-202ENST00000308354 LCE3DQ9BYE3 92 aa6.1□□□□□ -1.43
PDLIM2-202ENST00000308354 LCE4AQ5TA78 99 aa6.1□□□□□ -1.43
PDLIM2-202ENST00000308354 MT3P25713 68 aa6.05□□□□□ -1.44
PDLIM2-202ENST00000308354 OBSCNQ5VST9 7968 aa5.98□□□□□ -1.45
PDLIM2-202ENST00000308354 LCE3EQ5T5B0 92 aa5.97□□□□□ -1.45
PDLIM2-202ENST00000308354 LCE1DQ5T752 114 aa5.97□□□□□ -1.45
PDLIM2-202ENST00000308354 KRTAP20-2Q3LI61 65 aa5.95□□□□□ -1.46
PDLIM2-202ENST00000308354 HMCN1Q96RW7 5635 aa5.94□□□□□ -1.46
PDLIM2-202ENST00000308354 KRTAP5-2Q701N4 177 aa5.76□□□□□ -1.49
PDLIM2-202ENST00000308354 KRTAP5-3Q6L8H2 238 aa5.7□□□□□ -1.5
PDLIM2-202ENST00000308354 PRM1P04553 51 aa5.52□□□□□ -1.53
PDLIM2-202ENST00000308354 LCE1EQ5T753 118 aa5.12□□□□□ -1.59
PDLIM2-202ENST00000308354 KRTAP4-11Q9BYQ6 195 aa5.11□□□□□ -1.59
PDLIM2-202ENST00000308354 AHNAK2Q8IVF2 5795 aa5.03□□□□□ -1.6
PDLIM2-202ENST00000308354 LCE1BQ5T7P3 118 aa5.01□□□□□ -1.61
PDLIM2-202ENST00000308354 KRTAP5-1Q6L8H4 278 aa5.01□□□□□ -1.61
PDLIM2-202ENST00000308354 MUC5ACP98088 5654 aa4.99□□□□□ -1.61
PDLIM2-202ENST00000308354 KRTAP5-8O75690 187 aa4.91□□□□□ -1.62
PDLIM2-202ENST00000308354 KRTAP5-10Q6L8G5 202 aa4.88□□□□□ -1.63
PDLIM2-202ENST00000308354 KRTAP4-2Q9BYR5 136 aa4.87□□□□□ -1.63
PDLIM2-202ENST00000308354 LCE1CQ5T751 118 aa4.81□□□□□ -1.64
PDLIM2-202ENST00000308354 GPR98Q8WXG9 6306 aa4.73□□□□□ -1.65
PDLIM2-202ENST00000308354 KRTAP5-7Q6L8G8 165 aa4.69□□□□□ -1.66
PDLIM2-202ENST00000308354 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.48□□□□□ -1.69
PDLIM2-202ENST00000308354 KRTAP21-2Q3LI59 83 aa4.38□□□□□ -1.71
PDLIM2-202ENST00000308354 MUC5BQ9HC84 5762 aaPredicted RBP4.34□□□□□ -1.71
PDLIM2-202ENST00000308354 KRTAP9-9Q9BYP9 154 aa4.33□□□□□ -1.72
PDLIM2-202ENST00000308354 KRTAP5-11Q6L8G4 156 aa4.21□□□□□ -1.74
PDLIM2-202ENST00000308354 KRTAP4-12Q9BQ66 201 aa4.13□□□□□ -1.75
PDLIM2-202ENST00000308354 KRTAP4-4Q9BYR3 166 aa4.02□□□□□ -1.77
PDLIM2-202ENST00000308354 AHNAKQ09666 5890 aaKnown RBP3.84□□□□□ -1.79
PDLIM2-202ENST00000308354 LCE1FQ5T754 118 aa3.66□□□□□ -1.82
PDLIM2-202ENST00000308354 PHGR1C9JFL3 82 aa3.64□□□□□ -1.83
PDLIM2-202ENST00000308354 MUC19Q7Z5P9 8384 aa3.56□□□□□ -1.84
PDLIM2-202ENST00000308354 KRTAP21-1Q3LI58 79 aa3.47□□□□□ -1.85
PDLIM2-202ENST00000308354 MUC16Q8WXI7 14507 aa2.31□□□□□ -2.04
Retrieved 77 of 20,778 RNA–protein pairs in 6.8 ms