RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 MT1LQ93083 61 aa4.01□□□□□ -1.77
CUX1-202ENST00000292538 KRTAP9-6A8MVA2 160 aa3.98□□□□□ -1.77
CUX1-202ENST00000292538 KRTAP9-2Q9BYQ4 174 aa3.97□□□□□ -1.77
CUX1-202ENST00000292538 KRTAP4-3Q9BYR4 195 aa3.95□□□□□ -1.78
CUX1-202ENST00000292538 SPRR2FQ96RM1 72 aa3.95□□□□□ -1.78
CUX1-202ENST00000292538 CRCT1Q9UGL9 99 aa3.92□□□□□ -1.78
CUX1-202ENST00000292538 MDN1Q9NU22 5596 aa3.89□□□□□ -1.79
CUX1-202ENST00000292538 LOC100996750A0A140TA64 210 aa3.88□□□□□ -1.79
CUX1-202ENST00000292538 MT1GP13640 62 aa3.85□□□□□ -1.79
CUX1-202ENST00000292538 KRTAP19-3Q7Z4W3 81 aa3.84□□□□□ -1.79
CUX1-202ENST00000292538 MT1MQ8N339 61 aa3.81□□□□□ -1.8
CUX1-202ENST00000292538 KRTAP9-6A0A140TA67 174 aa3.77□□□□□ -1.81
CUX1-202ENST00000292538 KRTAP19-4Q3LI73 84 aa3.73□□□□□ -1.81
CUX1-202ENST00000292538 LCE5AQ5TCM9 118 aa3.71□□□□□ -1.82
CUX1-202ENST00000292538 SYNE1Q8NF91 8797 aaKnown RBP3.66□□□□□ -1.82
CUX1-202ENST00000292538 SPRR2EP22531 72 aa3.64□□□□□ -1.83
CUX1-202ENST00000292538 SPRR2BP35325 72 aa3.64□□□□□ -1.83
CUX1-202ENST00000292538 SPRR2AP35326 72 aa3.64□□□□□ -1.83
CUX1-202ENST00000292538 KRTAP2-3P0C7H8 128 aa3.63□□□□□ -1.83
CUX1-202ENST00000292538 KRTAP2-4Q9BYR9 128 aa3.63□□□□□ -1.83
CUX1-202ENST00000292538 KRTAP2-1Q9BYU5 128 aa3.63□□□□□ -1.83
CUX1-202ENST00000292538 KRTAP2-2Q9BYT5 123 aa3.62□□□□□ -1.83
CUX1-202ENST00000292538 LCE1AQ5T7P2 110 aa3.61□□□□□ -1.83
CUX1-202ENST00000292538 KRTAP5-9P26371 169 aa3.56□□□□□ -1.84
CUX1-202ENST00000292538 LCE3BQ5TA77 95 aa3.53□□□□□ -1.84
CUX1-202ENST00000292538 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.52□□□□□ -1.85
CUX1-202ENST00000292538 OBSCNQ5VST9 7968 aa3.5□□□□□ -1.85
CUX1-202ENST00000292538 SPRR2DP22532 72 aa3.48□□□□□ -1.85
CUX1-202ENST00000292538 KRTAP6-1Q3LI64 71 aa3.45□□□□□ -1.86
CUX1-202ENST00000292538 KRTAP4-9Q9BYQ8 210 aa3.43□□□□□ -1.86
CUX1-202ENST00000292538 LCE1FQ5T754 118 aa3.42□□□□□ -1.86
CUX1-202ENST00000292538 KRTAP6-3Q3LI67 103 aa3.41□□□□□ -1.86
CUX1-202ENST00000292538 KRTAP9-4Q9BYQ2 154 aa3.35□□□□□ -1.87
CUX1-202ENST00000292538 MT1AP04731 61 aa3.34□□□□□ -1.87
CUX1-202ENST00000292538 KRTAP9-7A8MTY7 169 aa3.33□□□□□ -1.88
CUX1-202ENST00000292538 LCE1EQ5T753 118 aa3.33□□□□□ -1.88
CUX1-202ENST00000292538 KRTAP12-4P60329 112 aa3.32□□□□□ -1.88
CUX1-202ENST00000292538 KRTAP5-5Q701N2 237 aaPredicted RBP3.3□□□□□ -1.88
CUX1-202ENST00000292538 NEBP20929 6669 aa3.27□□□□□ -1.89
CUX1-202ENST00000292538 LCE3DQ9BYE3 92 aa3.18□□□□□ -1.9
CUX1-202ENST00000292538 LCE1DQ5T752 114 aa3.17□□□□□ -1.9
CUX1-202ENST00000292538 KRTAP6-2Q3LI66 62 aa3.16□□□□□ -1.9
CUX1-202ENST00000292538 KRTAP9-9Q9BYP9 154 aa3.16□□□□□ -1.9
CUX1-202ENST00000292538 MT4P47944 62 aa3.15□□□□□ -1.9
CUX1-202ENST00000292538 LCE3EQ5T5B0 92 aa3.09□□□□□ -1.91
CUX1-202ENST00000292538 KRTAP4-6Q9BYQ5 205 aa3.09□□□□□ -1.92
CUX1-202ENST00000292538 MT3P25713 68 aa3.06□□□□□ -1.92
CUX1-202ENST00000292538 LCE4AQ5TA78 99 aa3.06□□□□□ -1.92
CUX1-202ENST00000292538 KRTAP5-4Q6L8H1 288 aa2.99□□□□□ -1.93
CUX1-202ENST00000292538 HMCN1Q96RW7 5635 aa2.99□□□□□ -1.93
CUX1-202ENST00000292538 KRTAP20-1Q3LI63 56 aa2.92□□□□□ -1.94
CUX1-202ENST00000292538 KRTAP20-2Q3LI61 65 aa2.91□□□□□ -1.94
CUX1-202ENST00000292538 PRM1P04553 51 aa2.9□□□□□ -1.94
CUX1-202ENST00000292538 KRTAP5-2Q701N4 177 aa2.74□□□□□ -1.97
CUX1-202ENST00000292538 KRTAP5-3Q6L8H2 238 aa2.72□□□□□ -1.97
CUX1-202ENST00000292538 LCE1BQ5T7P3 118 aa2.65□□□□□ -1.98
CUX1-202ENST00000292538 GPR98Q8WXG9 6306 aa2.63□□□□□ -1.99
CUX1-202ENST00000292538 MUC5ACP98088 5654 aa2.59□□□□□ -1.99
CUX1-202ENST00000292538 KRTAP4-12Q9BQ66 201 aa2.53□□□□□ -2
CUX1-202ENST00000292538 KRTAP4-11Q9BYQ6 195 aa2.49□□□□□ -2.01
CUX1-202ENST00000292538 AHNAK2Q8IVF2 5795 aa2.43□□□□□ -2.02
CUX1-202ENST00000292538 KRTAP5-1Q6L8H4 278 aa2.42□□□□□ -2.02
CUX1-202ENST00000292538 KRTAP4-2Q9BYR5 136 aa2.39□□□□□ -2.03
CUX1-202ENST00000292538 MUC19Q7Z5P9 8384 aa2.38□□□□□ -2.03
CUX1-202ENST00000292538 LCE1CQ5T751 118 aa2.35□□□□□ -2.03
CUX1-202ENST00000292538 KRTAP5-8O75690 187 aa2.34□□□□□ -2.03
CUX1-202ENST00000292538 KRTAP5-10Q6L8G5 202 aa2.32□□□□□ -2.04
CUX1-202ENST00000292538 MUC5BQ9HC84 5762 aaPredicted RBP2.31□□□□□ -2.04
CUX1-202ENST00000292538 KRTAP5-7Q6L8G8 165 aa2.3□□□□□ -2.04
CUX1-202ENST00000292538 KRTAP21-2Q3LI59 83 aa2.18□□□□□ -2.06
CUX1-202ENST00000292538 KRTAP4-4Q9BYR3 166 aa2.18□□□□□ -2.06
CUX1-202ENST00000292538 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.12□□□□□ -2.07
CUX1-202ENST00000292538 AHNAKQ09666 5890 aaKnown RBP2.07□□□□□ -2.08
CUX1-202ENST00000292538 KRTAP5-11Q6L8G4 156 aa2.01□□□□□ -2.09
CUX1-202ENST00000292538 KRTAP21-1Q3LI58 79 aa1.78□□□□□ -2.12
CUX1-202ENST00000292538 PHGR1C9JFL3 82 aa1.77□□□□□ -2.13
CUX1-202ENST00000292538 MUC16Q8WXI7 14507 aa1.13□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 10.5 ms