RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 KRTAP4-3Q9BYR4 195 aa4.45□□□□□ -1.7
CD44-203ENST00000278386 TNP1P09430 55 aa4.44□□□□□ -1.7
CD44-203ENST00000278386 LINC01558Q9Y6Z2 57 aa4.44□□□□□ -1.7
CD44-203ENST00000278386 TMEM258P61165 79 aa4.42□□□□□ -1.7
CD44-203ENST00000278386 KRTAP5-4Q6L8H1 288 aa4.41□□□□□ -1.7
CD44-203ENST00000278386 PRR15LQ9BU68 103 aa4.4□□□□□ -1.71
CD44-203ENST00000278386 KRTAP4-6Q9BYQ5 205 aa4.38□□□□□ -1.71
CD44-203ENST00000278386 KRTAP5-10Q6L8G5 202 aa4.35□□□□□ -1.71
CD44-203ENST00000278386 KRTAP4-7Q9BYR0 210 aa4.3□□□□□ -1.72
CD44-203ENST00000278386 KRTAP12-3P60328 96 aa4.28□□□□□ -1.72
CD44-203ENST00000278386 UQCR11O14957 56 aa4.27□□□□□ -1.73
CD44-203ENST00000278386 KRTAP5-3Q6L8H2 238 aa4.22□□□□□ -1.73
CD44-203ENST00000278386 MIR22HGQ0VDD5 57 aa4.21□□□□□ -1.74
CD44-203ENST00000278386 KRTAP20-2Q3LI61 65 aa4.2□□□□□ -1.74
CD44-203ENST00000278386 KRTAP5-7Q6L8G8 165 aa4.2□□□□□ -1.74
CD44-203ENST00000278386 PSPHP1O15172 72 aa4.19□□□□□ -1.74
CD44-203ENST00000278386 Q1T7F1 81 aa4.17□□□□□ -1.74
CD44-203ENST00000278386 KRTAP5-5Q701N2 237 aaPredicted RBP4.17□□□□□ -1.74
CD44-203ENST00000278386 SPRR5A0A1B0GTR4 108 aa4.15□□□□□ -1.75
CD44-203ENST00000278386 KRTAP12-4P60329 112 aa4.13□□□□□ -1.75
CD44-203ENST00000278386 V9GYY9 64 aa4.13□□□□□ -1.75
CD44-203ENST00000278386 LOC100996750A0A140TA64 210 aa4.09□□□□□ -1.75
CD44-203ENST00000278386 KRTAP25-1Q3LHN0 102 aa4.08□□□□□ -1.76
CD44-203ENST00000278386 SYNE1Q8NF91 8797 aaKnown RBP4.08□□□□□ -1.76
CD44-203ENST00000278386 K7ERS5 55 aa4.04□□□□□ -1.76
CD44-203ENST00000278386 A6NED7 52 aa4.01□□□□□ -1.77
CD44-203ENST00000278386 PCP4P48539 62 aa3.98□□□□□ -1.77
CD44-203ENST00000278386 RPS28P62857 69 aaKnown RBP3.97□□□□□ -1.77
CD44-203ENST00000278386 KRTAP19-4Q3LI73 84 aa3.97□□□□□ -1.77
CD44-203ENST00000278386 KRTAP15-1Q3LI76 137 aa3.93□□□□□ -1.78
CD44-203ENST00000278386 KRTAP23-1A1A580 65 aa3.91□□□□□ -1.78
CD44-203ENST00000278386 LCE3CQ5T5A8 94 aa3.91□□□□□ -1.78
CD44-203ENST00000278386 KRTAP4-11Q9BYQ6 195 aa3.87□□□□□ -1.79
CD44-203ENST00000278386 CDC42SE1Q9NRR8 79 aa3.87□□□□□ -1.79
CD44-203ENST00000278386 MT1AP04731 61 aa3.85□□□□□ -1.79
CD44-203ENST00000278386 ROMO1P60602 79 aa3.85□□□□□ -1.79
CD44-203ENST00000278386 KRTAP6-1Q3LI64 71 aa3.84□□□□□ -1.79
CD44-203ENST00000278386 KRTAP5-2Q701N4 177 aa3.84□□□□□ -1.79
CD44-203ENST00000278386 AHNAKQ09666 5890 aaKnown RBP3.74□□□□□ -1.81
CD44-203ENST00000278386 KRTAP5-8O75690 187 aa3.73□□□□□ -1.81
CD44-203ENST00000278386 KRTAP9-4Q9BYQ2 154 aa3.72□□□□□ -1.81
CD44-203ENST00000278386 MUC5BQ9HC84 5762 aaPredicted RBP3.72□□□□□ -1.81
CD44-203ENST00000278386 KRTAP6-2Q3LI66 62 aa3.7□□□□□ -1.82
CD44-203ENST00000278386 MUC5ACP98088 5654 aa3.69□□□□□ -1.82
CD44-203ENST00000278386 KRTAP9-6A8MVA2 160 aa3.68□□□□□ -1.82
CD44-203ENST00000278386 OBSCNQ5VST9 7968 aa3.61□□□□□ -1.83
CD44-203ENST00000278386 KRTAP9-9Q9BYP9 154 aa3.6□□□□□ -1.83
CD44-203ENST00000278386 MT3P25713 68 aa3.53□□□□□ -1.84
CD44-203ENST00000278386 BRK1Q8WUW1 75 aa3.49□□□□□ -1.85
CD44-203ENST00000278386 KRTAP5-1Q6L8H4 278 aa3.47□□□□□ -1.85
CD44-203ENST00000278386 PMAIP1Q13794 54 aa3.26□□□□□ -1.89
CD44-203ENST00000278386 LCE1EQ5T753 118 aa3.24□□□□□ -1.89
CD44-203ENST00000278386 PRAC1Q96KF2 57 aa3.22□□□□□ -1.89
CD44-203ENST00000278386 LCE1BQ5T7P3 118 aa3.14□□□□□ -1.91
CD44-203ENST00000278386 PRO0628Q9UI54 55 aa3.13□□□□□ -1.91
CD44-203ENST00000278386 KRTAP4-2Q9BYR5 136 aa3.1□□□□□ -1.91
CD44-203ENST00000278386 LCE1CQ5T751 118 aa3.02□□□□□ -1.93
CD44-203ENST00000278386 KTN1-AS1Q86SY8 53 aa2.91□□□□□ -1.94
CD44-203ENST00000278386 KRTAP4-12Q9BQ66 201 aa2.9□□□□□ -1.95
CD44-203ENST00000278386 LCE3DQ9BYE3 92 aa2.79□□□□□ -1.96
CD44-203ENST00000278386 SVIPQ8NHG7 77 aa2.78□□□□□ -1.96
CD44-203ENST00000278386 KRTAP5-11Q6L8G4 156 aa2.77□□□□□ -1.97
CD44-203ENST00000278386 LCE1FQ5T754 118 aa2.71□□□□□ -1.98
CD44-203ENST00000278386 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.71□□□□□ -1.98
CD44-203ENST00000278386 LCE3EQ5T5B0 92 aa2.6□□□□□ -1.99
CD44-203ENST00000278386 LUZP6Q538Z0 58 aa2.58□□□□□ -2
CD44-203ENST00000278386 PHGR1C9JFL3 82 aa2.57□□□□□ -2
CD44-203ENST00000278386 KRTAP21-2Q3LI59 83 aa2.51□□□□□ -2.01
CD44-203ENST00000278386 KRTAP4-4Q9BYR3 166 aa2.37□□□□□ -2.03
CD44-203ENST00000278386 MUC19Q7Z5P9 8384 aa2.25□□□□□ -2.05
CD44-203ENST00000278386 NDUFAF8A1L188 74 aa2.24□□□□□ -2.05
CD44-203ENST00000278386 PRM1P04553 51 aa2□□□□□ -2.09
CD44-203ENST00000278386 A0A0A0MQY5 61 aa1.96□□□□□ -2.1
CD44-203ENST00000278386 KRTAP21-1Q3LI58 79 aa1.95□□□□□ -2.1
CD44-203ENST00000278386 INE1O15225 51 aa1.86□□□□□ -2.11
CD44-203ENST00000278386 H3BS24 57 aa1.78□□□□□ -2.12
CD44-203ENST00000278386 MUC16Q8WXI7 14507 aa1.65□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 9.9 ms