RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 COX6B2Q6YFQ2 88 aa1.95□□□□□ -2.1
CD44-202ENST00000278385 M0R2T5 61 aa1.94□□□□□ -2.1
CD44-202ENST00000278385 KRTAP10-10P60014 251 aa1.94□□□□□ -2.1
CD44-202ENST00000278385 KRTAP12-1P59990 96 aa1.92□□□□□ -2.1
CD44-202ENST00000278385 CRCT1Q9UGL9 99 aa1.9□□□□□ -2.11
CD44-202ENST00000278385 KRTAP6-3Q3LI67 103 aa1.87□□□□□ -2.11
CD44-202ENST00000278385 FLGP20930 4061 aaPredicted RBP1.86□□□□□ -2.11
CD44-202ENST00000278385 MRPL34Q9BQ48 92 aaKnown RBP1.84□□□□□ -2.11
CD44-202ENST00000278385 TP53AIP1Q9HCN2 124 aa1.84□□□□□ -2.11
CD44-202ENST00000278385 CRIPTQ9P021 101 aa1.84□□□□□ -2.11
CD44-202ENST00000278385 WFDC13Q8IUB5 93 aa1.83□□□□□ -2.12
CD44-202ENST00000278385 MMP24-AS1A0A0U1RRL7 71 aa1.82□□□□□ -2.12
CD44-202ENST00000278385 MT2AP02795 61 aa1.82□□□□□ -2.12
CD44-202ENST00000278385 K7EQZ3 153 aa1.81□□□□□ -2.12
CD44-202ENST00000278385 MT1FP04733 61 aa1.8□□□□□ -2.12
CD44-202ENST00000278385 H1FX-AS1Q4G0G2 97 aa1.8□□□□□ -2.12
CD44-202ENST00000278385 FSIP2Q5CZC0 6907 aa1.79□□□□□ -2.12
CD44-202ENST00000278385 KRTAP12-4P60329 112 aa1.77□□□□□ -2.13
CD44-202ENST00000278385 KRTAP5-8O75690 187 aa1.76□□□□□ -2.13
CD44-202ENST00000278385 C10orf95Q9H7T3 257 aa1.75□□□□□ -2.13
CD44-202ENST00000278385 KRTAP19-6Q3LI70 58 aa1.74□□□□□ -2.13
CD44-202ENST00000278385 USH2AO75445 5202 aa1.73□□□□□ -2.13
CD44-202ENST00000278385 SSPOA2VEC9 5147 aa1.72□□□□□ -2.13
CD44-202ENST00000278385 S4R3F8 94 aa1.72□□□□□ -2.13
CD44-202ENST00000278385 H0YAA0 97 aa1.69□□□□□ -2.14
CD44-202ENST00000278385 FCGBPQ9Y6R7 5405 aaPredicted RBP1.68□□□□□ -2.14
CD44-202ENST00000278385 SPRR2GQ9BYE4 73 aa1.68□□□□□ -2.14
CD44-202ENST00000278385 KRTAP19-8Q3LI54 63 aa1.67□□□□□ -2.14
CD44-202ENST00000278385 MT1BP07438 61 aa1.65□□□□□ -2.15
CD44-202ENST00000278385 A0A0D9SG42 100 aa1.63□□□□□ -2.15
CD44-202ENST00000278385 MACF1Q9UPN3 7388 aaKnown RBP1.62□□□□□ -2.15
CD44-202ENST00000278385 SYNE2Q8WXH0 6885 aaKnown RBP1.58□□□□□ -2.16
CD44-202ENST00000278385 KRTAP12-3P60328 96 aa1.58□□□□□ -2.16
CD44-202ENST00000278385 KRTAP5-7Q6L8G8 165 aa1.58□□□□□ -2.16
CD44-202ENST00000278385 M0QZ58 72 aa1.56□□□□□ -2.16
CD44-202ENST00000278385 MUC19Q7Z5P9 8384 aa1.55□□□□□ -2.16
CD44-202ENST00000278385 MT1XP80297 61 aa1.54□□□□□ -2.16
CD44-202ENST00000278385 KRTAP20-1Q3LI63 56 aa1.54□□□□□ -2.16
CD44-202ENST00000278385 MUC12Q9UKN1 5478 aa1.53□□□□□ -2.16
CD44-202ENST00000278385 KRTAP8-1Q8IUC2 63 aa1.52□□□□□ -2.17
CD44-202ENST00000278385 SPRR2FQ96RM1 72 aa1.52□□□□□ -2.17
CD44-202ENST00000278385 KRTAP2-3P0C7H8 128 aa1.51□□□□□ -2.17
CD44-202ENST00000278385 KRTAP2-4Q9BYR9 128 aa1.51□□□□□ -2.17
CD44-202ENST00000278385 SPRR2EP22531 72 aa1.5□□□□□ -2.17
CD44-202ENST00000278385 SPRR2BP35325 72 aa1.5□□□□□ -2.17
CD44-202ENST00000278385 SPRR2AP35326 72 aa1.5□□□□□ -2.17
CD44-202ENST00000278385 NEBP20929 6669 aa1.49□□□□□ -2.17
CD44-202ENST00000278385 KMT2DO14686 5537 aa1.48□□□□□ -2.17
CD44-202ENST00000278385 KRTAP2-1Q9BYU5 128 aa1.47□□□□□ -2.17
CD44-202ENST00000278385 SPRR2DP22532 72 aa1.45□□□□□ -2.18
CD44-202ENST00000278385 MDN1Q9NU22 5596 aa1.45□□□□□ -2.18
CD44-202ENST00000278385 KRTAP19-7Q3SYF9 63 aa1.39□□□□□ -2.19
CD44-202ENST00000278385 MT1EP04732 61 aa1.38□□□□□ -2.19
CD44-202ENST00000278385 KRTAP19-3Q7Z4W3 81 aa1.38□□□□□ -2.19
CD44-202ENST00000278385 HMCN1Q96RW7 5635 aa1.38□□□□□ -2.19
CD44-202ENST00000278385 TNP1P09430 55 aa1.36□□□□□ -2.19
CD44-202ENST00000278385 MT1GP13640 62 aa1.36□□□□□ -2.19
CD44-202ENST00000278385 KRTAP21-2Q3LI59 83 aa1.36□□□□□ -2.19
CD44-202ENST00000278385 KRTAP19-5Q3LI72 72 aa1.35□□□□□ -2.19
CD44-202ENST00000278385 MT1MQ8N339 61 aa1.31□□□□□ -2.2
CD44-202ENST00000278385 MT1LQ93083 61 aa1.31□□□□□ -2.2
CD44-202ENST00000278385 DSTQ03001 7570 aaKnown RBP1.28□□□□□ -2.2
CD44-202ENST00000278385 MT4P47944 62 aa1.26□□□□□ -2.21
CD44-202ENST00000278385 KRTAP20-2Q3LI61 65 aa1.19□□□□□ -2.22
CD44-202ENST00000278385 KRTAP5-10Q6L8G5 202 aa1.19□□□□□ -2.22
CD44-202ENST00000278385 GPR98Q8WXG9 6306 aa1.18□□□□□ -2.22
CD44-202ENST00000278385 AHNAK2Q8IVF2 5795 aa1.13□□□□□ -2.23
CD44-202ENST00000278385 MT1AP04731 61 aa1.13□□□□□ -2.23
CD44-202ENST00000278385 SYNE1Q8NF91 8797 aaKnown RBP1.11□□□□□ -2.23
CD44-202ENST00000278385 KRTAP6-1Q3LI64 71 aa1.1□□□□□ -2.23
CD44-202ENST00000278385 KRTAP6-2Q3LI66 62 aa1.06□□□□□ -2.24
CD44-202ENST00000278385 PRM1P04553 51 aa1.03□□□□□ -2.24
CD44-202ENST00000278385 MUC5BQ9HC84 5762 aaPredicted RBP0.94□□□□□ -2.26
CD44-202ENST00000278385 MUC5ACP98088 5654 aa0.93□□□□□ -2.26
CD44-202ENST00000278385 AHNAKQ09666 5890 aaKnown RBP0.92□□□□□ -2.26
CD44-202ENST00000278385 KRTAP21-1Q3LI58 79 aa0.86□□□□□ -2.27
CD44-202ENST00000278385 MUC16Q8WXI7 14507 aa0.7□□□□□ -2.3
CD44-202ENST00000278385 PHGR1C9JFL3 82 aa0.7□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 112 ms