RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 MUC12Q9UKN1 5478 aa5.03□□□□□ -1.6
SS18-201ENST00000269137 SPRR2FQ96RM1 72 aa5.03□□□□□ -1.6
SS18-201ENST00000269137 KRTAP5-9P26371 169 aa5.02□□□□□ -1.61
SS18-201ENST00000269137 KRTAP19-4Q3LI73 84 aa5.02□□□□□ -1.61
SS18-201ENST00000269137 MT1LQ93083 61 aa5.02□□□□□ -1.61
SS18-201ENST00000269137 LCE3CQ5T5A8 94 aa4.95□□□□□ -1.62
SS18-201ENST00000269137 LCE3BQ5TA77 95 aa4.95□□□□□ -1.62
SS18-201ENST00000269137 KRTAP6-3Q3LI67 103 aa4.94□□□□□ -1.62
SS18-201ENST00000269137 KRTAP19-3Q7Z4W3 81 aa4.94□□□□□ -1.62
SS18-201ENST00000269137 KRTAP4-12Q9BQ66 201 aa4.93□□□□□ -1.62
SS18-201ENST00000269137 MT1GP13640 62 aa4.9□□□□□ -1.62
SS18-201ENST00000269137 MDN1Q9NU22 5596 aa4.9□□□□□ -1.63
SS18-201ENST00000269137 LCE5AQ5TCM9 118 aa4.86□□□□□ -1.63
SS18-201ENST00000269137 LCE1AQ5T7P2 110 aa4.83□□□□□ -1.64
SS18-201ENST00000269137 MT1MQ8N339 61 aa4.83□□□□□ -1.64
SS18-201ENST00000269137 KRTAP4-7Q9BYR0 210 aa4.83□□□□□ -1.64
SS18-201ENST00000269137 KRTAP9-9Q9BYP9 154 aa4.81□□□□□ -1.64
SS18-201ENST00000269137 KRTAP9-4Q9BYQ2 154 aa4.81□□□□□ -1.64
SS18-201ENST00000269137 SPRR2EP22531 72 aa4.78□□□□□ -1.64
SS18-201ENST00000269137 SPRR2BP35325 72 aa4.78□□□□□ -1.64
SS18-201ENST00000269137 SPRR2AP35326 72 aa4.78□□□□□ -1.64
SS18-201ENST00000269137 KRTAP9-7A8MTY7 169 aa4.76□□□□□ -1.65
SS18-201ENST00000269137 KRTAP4-3Q9BYR4 195 aa4.71□□□□□ -1.66
SS18-201ENST00000269137 A0A0A0MQY5 61 aa4.69□□□□□ -1.66
SS18-201ENST00000269137 NEBP20929 6669 aa4.68□□□□□ -1.66
SS18-201ENST00000269137 KRTAP9-6A8MVA2 160 aa4.68□□□□□ -1.66
SS18-201ENST00000269137 LCE1DQ5T752 114 aa4.65□□□□□ -1.67
SS18-201ENST00000269137 SPRR2DP22532 72 aa4.6□□□□□ -1.67
SS18-201ENST00000269137 DSTQ03001 7570 aaKnown RBP4.6□□□□□ -1.67
SS18-201ENST00000269137 KRTAP4-9Q9BYQ8 210 aa4.51□□□□□ -1.69
SS18-201ENST00000269137 KRTAP4-2Q9BYR5 136 aa4.42□□□□□ -1.7
SS18-201ENST00000269137 KRTAP5-5Q701N2 237 aaPredicted RBP4.37□□□□□ -1.71
SS18-201ENST00000269137 KRTAP2-3P0C7H8 128 aa4.35□□□□□ -1.71
SS18-201ENST00000269137 KRTAP2-4Q9BYR9 128 aa4.35□□□□□ -1.71
SS18-201ENST00000269137 KRTAP2-1Q9BYU5 128 aa4.35□□□□□ -1.71
SS18-201ENST00000269137 INE1O15225 51 aa4.32□□□□□ -1.72
SS18-201ENST00000269137 KRTAP4-11Q9BYQ6 195 aa4.32□□□□□ -1.72
SS18-201ENST00000269137 MT1AP04731 61 aa4.28□□□□□ -1.72
SS18-201ENST00000269137 LCE4AQ5TA78 99 aa4.26□□□□□ -1.73
SS18-201ENST00000269137 KRTAP6-1Q3LI64 71 aa4.23□□□□□ -1.73
SS18-201ENST00000269137 KRTAP20-1Q3LI63 56 aa4.22□□□□□ -1.73
SS18-201ENST00000269137 KRTAP2-2Q9BYT5 123 aa4.22□□□□□ -1.73
SS18-201ENST00000269137 KRTAP5-4Q6L8H1 288 aa4.2□□□□□ -1.74
SS18-201ENST00000269137 SYNE1Q8NF91 8797 aaKnown RBP4.19□□□□□ -1.74
SS18-201ENST00000269137 KRTAP12-4P60329 112 aa4.07□□□□□ -1.76
SS18-201ENST00000269137 KRTAP5-3Q6L8H2 238 aa4.02□□□□□ -1.77
SS18-201ENST00000269137 MT4P47944 62 aa3.98□□□□□ -1.77
SS18-201ENST00000269137 HMCN1Q96RW7 5635 aa3.95□□□□□ -1.78
SS18-201ENST00000269137 KRTAP20-2Q3LI61 65 aa3.91□□□□□ -1.78
SS18-201ENST00000269137 KRTAP6-2Q3LI66 62 aa3.9□□□□□ -1.79
SS18-201ENST00000269137 MT3P25713 68 aa3.88□□□□□ -1.79
SS18-201ENST00000269137 KRTAP5-2Q701N4 177 aa3.81□□□□□ -1.8
SS18-201ENST00000269137 LCE3DQ9BYE3 92 aa3.72□□□□□ -1.81
SS18-201ENST00000269137 LCE3EQ5T5B0 92 aa3.61□□□□□ -1.83
SS18-201ENST00000269137 OBSCNQ5VST9 7968 aa3.6□□□□□ -1.83
SS18-201ENST00000269137 AHNAK2Q8IVF2 5795 aa3.55□□□□□ -1.84
SS18-201ENST00000269137 LCE1EQ5T753 118 aa3.4□□□□□ -1.87
SS18-201ENST00000269137 PRM1P04553 51 aa3.29□□□□□ -1.88
SS18-201ENST00000269137 KRTAP5-10Q6L8G5 202 aa3.29□□□□□ -1.88
SS18-201ENST00000269137 KRTAP5-1Q6L8H4 278 aa3.28□□□□□ -1.88
SS18-201ENST00000269137 GPR98Q8WXG9 6306 aa3.27□□□□□ -1.89
SS18-201ENST00000269137 KRTAP5-8O75690 187 aa3.26□□□□□ -1.89
SS18-201ENST00000269137 MUC5ACP98088 5654 aa3.25□□□□□ -1.89
SS18-201ENST00000269137 KRTAP5-7Q6L8G8 165 aa3.19□□□□□ -1.9
SS18-201ENST00000269137 LCE1CQ5T751 118 aa3.15□□□□□ -1.91
SS18-201ENST00000269137 LCE1BQ5T7P3 118 aa3.15□□□□□ -1.91
SS18-201ENST00000269137 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.02□□□□□ -1.93
SS18-201ENST00000269137 MUC5BQ9HC84 5762 aaPredicted RBP2.89□□□□□ -1.95
SS18-201ENST00000269137 KRTAP5-11Q6L8G4 156 aa2.88□□□□□ -1.95
SS18-201ENST00000269137 KRTAP21-2Q3LI59 83 aa2.78□□□□□ -1.96
SS18-201ENST00000269137 AHNAKQ09666 5890 aaKnown RBP2.74□□□□□ -1.97
SS18-201ENST00000269137 LCE1FQ5T754 118 aa2.53□□□□□ -2
SS18-201ENST00000269137 KRTAP4-4Q9BYR3 166 aa2.47□□□□□ -2.01
SS18-201ENST00000269137 PHGR1C9JFL3 82 aa2.39□□□□□ -2.03
SS18-201ENST00000269137 MUC19Q7Z5P9 8384 aa2.15□□□□□ -2.06
SS18-201ENST00000269137 KRTAP21-1Q3LI58 79 aa2.07□□□□□ -2.08
SS18-201ENST00000269137 MUC16Q8WXI7 14507 aa1.57□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 76.6 ms