RNA–Protein interactions for RNA: ENST00000266679.8

CPSF6-201, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 1 (best) BASIC

Gene CPSF6, Length 2,229 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-201ENST00000266679 KRTAP4-8A0A0G2JLE6 195 aa4.77□□□□□ -1.65
CPSF6-201ENST00000266679 KRTAP4-8Q9BYQ9 185 aa4.77□□□□□ -1.65
CPSF6-201ENST00000266679 KRTAP5-9P26371 169 aa4.7□□□□□ -1.66
CPSF6-201ENST00000266679 LCE3CQ5T5A8 94 aa4.69□□□□□ -1.66
CPSF6-201ENST00000266679 KRTAP20-1Q3LI63 56 aa4.64□□□□□ -1.67
CPSF6-201ENST00000266679 KRTAP19-7Q3SYF9 63 aa4.64□□□□□ -1.67
CPSF6-201ENST00000266679 SPRR2FQ96RM1 72 aa4.6□□□□□ -1.67
CPSF6-201ENST00000266679 SPRR2EP22531 72 aa4.54□□□□□ -1.68
CPSF6-201ENST00000266679 SPRR2BP35325 72 aa4.54□□□□□ -1.68
CPSF6-201ENST00000266679 SPRR2AP35326 72 aa4.54□□□□□ -1.68
CPSF6-201ENST00000266679 KRTAP4-7Q9BYR0 210 aa4.53□□□□□ -1.68
CPSF6-201ENST00000266679 MT1EP04732 61 aa4.52□□□□□ -1.69
CPSF6-201ENST00000266679 KRTAP9-6A8MVA2 160 aa4.52□□□□□ -1.69
CPSF6-201ENST00000266679 MT1LQ93083 61 aa4.5□□□□□ -1.69
CPSF6-201ENST00000266679 KRTAP2-3P0C7H8 128 aa4.47□□□□□ -1.69
CPSF6-201ENST00000266679 KRTAP2-4Q9BYR9 128 aa4.47□□□□□ -1.69
CPSF6-201ENST00000266679 LCE1AQ5T7P2 110 aa4.46□□□□□ -1.69
CPSF6-201ENST00000266679 INE1O15225 51 aa4.41□□□□□ -1.7
CPSF6-201ENST00000266679 KRTAP19-4Q3LI73 84 aa4.4□□□□□ -1.7
CPSF6-201ENST00000266679 SPRR2DP22532 72 aa4.38□□□□□ -1.71
CPSF6-201ENST00000266679 KRTAP2-2Q9BYT5 123 aa4.32□□□□□ -1.72
CPSF6-201ENST00000266679 KRTAP2-1Q9BYU5 128 aa4.32□□□□□ -1.72
CPSF6-201ENST00000266679 KRTAP4-3Q9BYR4 195 aa4.29□□□□□ -1.72
CPSF6-201ENST00000266679 LCE3BQ5TA77 95 aa4.27□□□□□ -1.73
CPSF6-201ENST00000266679 KRTAP19-3Q7Z4W3 81 aa4.24□□□□□ -1.73
CPSF6-201ENST00000266679 LOC100996750A0A140TA64 210 aa4.23□□□□□ -1.73
CPSF6-201ENST00000266679 MT1MQ8N339 61 aa4.23□□□□□ -1.73
CPSF6-201ENST00000266679 MT1GP13640 62 aa4.21□□□□□ -1.74
CPSF6-201ENST00000266679 DSTQ03001 7570 aaKnown RBP4.2□□□□□ -1.74
CPSF6-201ENST00000266679 LCE5AQ5TCM9 118 aa4.1□□□□□ -1.75
CPSF6-201ENST00000266679 KRTAP4-9Q9BYQ8 210 aa4.05□□□□□ -1.76
CPSF6-201ENST00000266679 GPR98Q8WXG9 6306 aa3.97□□□□□ -1.77
CPSF6-201ENST00000266679 HMCN1Q96RW7 5635 aa3.92□□□□□ -1.78
CPSF6-201ENST00000266679 LCE1DQ5T752 114 aa3.91□□□□□ -1.78
CPSF6-201ENST00000266679 MT4P47944 62 aa3.88□□□□□ -1.79
CPSF6-201ENST00000266679 KRTAP4-6Q9BYQ5 205 aa3.85□□□□□ -1.79
CPSF6-201ENST00000266679 KRTAP6-1Q3LI64 71 aa3.82□□□□□ -1.8
CPSF6-201ENST00000266679 LCE4AQ5TA78 99 aa3.81□□□□□ -1.8
CPSF6-201ENST00000266679 AHNAK2Q8IVF2 5795 aa3.79□□□□□ -1.8
CPSF6-201ENST00000266679 MT1AP04731 61 aa3.78□□□□□ -1.8
CPSF6-201ENST00000266679 KRTAP12-4P60329 112 aa3.78□□□□□ -1.8
CPSF6-201ENST00000266679 KRTAP5-4Q6L8H1 288 aa3.75□□□□□ -1.81
CPSF6-201ENST00000266679 KRTAP5-5Q701N2 237 aaPredicted RBP3.74□□□□□ -1.81
CPSF6-201ENST00000266679 KRTAP5-10Q6L8G5 202 aa3.64□□□□□ -1.83
CPSF6-201ENST00000266679 SYNE1Q8NF91 8797 aaKnown RBP3.63□□□□□ -1.83
CPSF6-201ENST00000266679 LCE3DQ9BYE3 92 aa3.59□□□□□ -1.84
CPSF6-201ENST00000266679 KRTAP20-2Q3LI61 65 aa3.58□□□□□ -1.84
CPSF6-201ENST00000266679 KRTAP9-4Q9BYQ2 154 aa3.56□□□□□ -1.84
CPSF6-201ENST00000266679 KRTAP5-3Q6L8H2 238 aa3.54□□□□□ -1.84
CPSF6-201ENST00000266679 LCE3EQ5T5B0 92 aa3.54□□□□□ -1.84
CPSF6-201ENST00000266679 KRTAP5-7Q6L8G8 165 aa3.47□□□□□ -1.85
CPSF6-201ENST00000266679 KRTAP6-2Q3LI66 62 aa3.45□□□□□ -1.86
CPSF6-201ENST00000266679 KRTAP4-12Q9BQ66 201 aa3.44□□□□□ -1.86
CPSF6-201ENST00000266679 MT3P25713 68 aa3.39□□□□□ -1.87
CPSF6-201ENST00000266679 PRM1P04553 51 aa3.35□□□□□ -1.87
CPSF6-201ENST00000266679 KRTAP9-9Q9BYP9 154 aa3.35□□□□□ -1.87
CPSF6-201ENST00000266679 KRTAP5-2Q701N4 177 aa3.28□□□□□ -1.88
CPSF6-201ENST00000266679 KRTAP4-11Q9BYQ6 195 aa3.27□□□□□ -1.89
CPSF6-201ENST00000266679 OBSCNQ5VST9 7968 aa3.24□□□□□ -1.89
CPSF6-201ENST00000266679 KRTAP5-8O75690 187 aa3.17□□□□□ -1.9
CPSF6-201ENST00000266679 MUC5BQ9HC84 5762 aaPredicted RBP3.14□□□□□ -1.91
CPSF6-201ENST00000266679 MUC5ACP98088 5654 aa3.11□□□□□ -1.91
CPSF6-201ENST00000266679 AHNAKQ09666 5890 aaKnown RBP3.1□□□□□ -1.91
CPSF6-201ENST00000266679 KRTAP4-2Q9BYR5 136 aa3.01□□□□□ -1.93
CPSF6-201ENST00000266679 KRTAP5-1Q6L8H4 278 aa2.97□□□□□ -1.93
CPSF6-201ENST00000266679 LCE1BQ5T7P3 118 aa2.78□□□□□ -1.96
CPSF6-201ENST00000266679 LCE1EQ5T753 118 aa2.78□□□□□ -1.96
CPSF6-201ENST00000266679 LCE1CQ5T751 118 aa2.62□□□□□ -1.99
CPSF6-201ENST00000266679 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.47□□□□□ -2.01
CPSF6-201ENST00000266679 KRTAP21-2Q3LI59 83 aa2.46□□□□□ -2.02
CPSF6-201ENST00000266679 KRTAP5-11Q6L8G4 156 aa2.35□□□□□ -2.03
CPSF6-201ENST00000266679 KRTAP4-4Q9BYR3 166 aa2.28□□□□□ -2.04
CPSF6-201ENST00000266679 LCE1FQ5T754 118 aa2.25□□□□□ -2.05
CPSF6-201ENST00000266679 PHGR1C9JFL3 82 aa2.14□□□□□ -2.07
CPSF6-201ENST00000266679 KRTAP21-1Q3LI58 79 aa2.07□□□□□ -2.08
CPSF6-201ENST00000266679 MUC19Q7Z5P9 8384 aa2□□□□□ -2.09
CPSF6-201ENST00000266679 MUC16Q8WXI7 14507 aa1.35□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 31 ms