RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 KRTAP19-3Q7Z4W3 81 aa3.61□□□□□ -1.83
VPS41-201ENST00000265745 PRO0628Q9UI54 55 aa3.61□□□□□ -1.83
VPS41-201ENST00000265745 SERP1Q9Y6X1 66 aa3.61□□□□□ -1.83
VPS41-201ENST00000265745 SPATA8Q6RVD6 105 aa3.6□□□□□ -1.83
VPS41-201ENST00000265745 A0A1B0GU33 70 aa3.58□□□□□ -1.84
VPS41-201ENST00000265745 SPINT4Q6UDR6 99 aa3.57□□□□□ -1.84
VPS41-201ENST00000265745 GPR98Q8WXG9 6306 aa3.57□□□□□ -1.84
VPS41-201ENST00000265745 KRTAP12-1P59990 96 aa3.55□□□□□ -1.84
VPS41-201ENST00000265745 LUZP6Q538Z0 58 aa3.55□□□□□ -1.84
VPS41-201ENST00000265745 COX7CP15954 63 aa3.54□□□□□ -1.84
VPS41-201ENST00000265745 KRTAP19-5Q3LI72 72 aa3.54□□□□□ -1.84
VPS41-201ENST00000265745 H7BZZ5 65 aa3.53□□□□□ -1.84
VPS41-201ENST00000265745 MT1GP13640 62 aa3.53□□□□□ -1.84
VPS41-201ENST00000265745 CYSTM1Q9H1C7 97 aa3.52□□□□□ -1.85
VPS41-201ENST00000265745 PP632Q6XCG6 107 aa3.48□□□□□ -1.85
VPS41-201ENST00000265745 MT1MQ8N339 61 aa3.46□□□□□ -1.86
VPS41-201ENST00000265745 ANAPC13Q9BS18 74 aa3.46□□□□□ -1.86
VPS41-201ENST00000265745 A0A1B0GU69 56 aa3.45□□□□□ -1.86
VPS41-201ENST00000265745 MT1LQ93083 61 aa3.45□□□□□ -1.86
VPS41-201ENST00000265745 LCE3EQ5T5B0 92 aa3.44□□□□□ -1.86
VPS41-201ENST00000265745 LCE1EQ5T753 118 aa3.42□□□□□ -1.86
VPS41-201ENST00000265745 C10orf95Q9H7T3 257 aa3.42□□□□□ -1.86
VPS41-201ENST00000265745 LCE3AQ5TA76 89 aa3.41□□□□□ -1.86
VPS41-201ENST00000265745 TNP1P09430 55 aa3.4□□□□□ -1.87
VPS41-201ENST00000265745 MT4P47944 62 aa3.39□□□□□ -1.87
VPS41-201ENST00000265745 KRTAP4-3Q9BYR4 195 aa3.39□□□□□ -1.87
VPS41-201ENST00000265745 HMCN1Q96RW7 5635 aa3.38□□□□□ -1.87
VPS41-201ENST00000265745 KRTAP5-4Q6L8H1 288 aa3.36□□□□□ -1.87
VPS41-201ENST00000265745 K7ERS5 55 aa3.32□□□□□ -1.88
VPS41-201ENST00000265745 PRR15LQ9BU68 103 aa3.32□□□□□ -1.88
VPS41-201ENST00000265745 CCDC179H3BU77 68 aa3.3□□□□□ -1.88
VPS41-201ENST00000265745 KRTAP12-3P60328 96 aa3.29□□□□□ -1.88
VPS41-201ENST00000265745 LINC01558Q9Y6Z2 57 aa3.29□□□□□ -1.88
VPS41-201ENST00000265745 ATP5EP56381 51 aaPredicted RBP3.27□□□□□ -1.89
VPS41-201ENST00000265745 AHNAK2Q8IVF2 5795 aa3.25□□□□□ -1.89
VPS41-201ENST00000265745 KRTAP5-10Q6L8G5 202 aa3.25□□□□□ -1.89
VPS41-201ENST00000265745 A6NED7 52 aa3.23□□□□□ -1.89
VPS41-201ENST00000265745 UQCR11O14957 56 aa3.22□□□□□ -1.89
VPS41-201ENST00000265745 KRTAP9-6A8MVA2 160 aa3.19□□□□□ -1.9
VPS41-201ENST00000265745 KRTAP5-5Q701N2 237 aaPredicted RBP3.19□□□□□ -1.9
VPS41-201ENST00000265745 KRTAP25-1Q3LHN0 102 aa3.17□□□□□ -1.9
VPS41-201ENST00000265745 TMEM258P61165 79 aa3.16□□□□□ -1.9
VPS41-201ENST00000265745 KRTAP20-2Q3LI61 65 aa3.16□□□□□ -1.9
VPS41-201ENST00000265745 KRTAP5-11Q6L8G4 156 aa3.16□□□□□ -1.9
VPS41-201ENST00000265745 SPRR5A0A1B0GTR4 108 aa3.14□□□□□ -1.91
VPS41-201ENST00000265745 MIR22HGQ0VDD5 57 aa3.13□□□□□ -1.91
VPS41-201ENST00000265745 KRTAP12-4P60329 112 aa3.12□□□□□ -1.91
VPS41-201ENST00000265745 KRTAP5-7Q6L8G8 165 aa3.12□□□□□ -1.91
VPS41-201ENST00000265745 SYNE1Q8NF91 8797 aaKnown RBP3.09□□□□□ -1.91
VPS41-201ENST00000265745 Q1T7F1 81 aa3□□□□□ -1.93
VPS41-201ENST00000265745 PMAIP1Q13794 54 aa2.96□□□□□ -1.94
VPS41-201ENST00000265745 LCE3DQ9BYE3 92 aa2.96□□□□□ -1.94
VPS41-201ENST00000265745 MT1AP04731 61 aa2.93□□□□□ -1.94
VPS41-201ENST00000265745 KRTAP6-1Q3LI64 71 aa2.92□□□□□ -1.94
VPS41-201ENST00000265745 KRTAP5-2Q701N4 177 aa2.92□□□□□ -1.94
VPS41-201ENST00000265745 CDC42SE1Q9NRR8 79 aa2.91□□□□□ -1.94
VPS41-201ENST00000265745 ROMO1P60602 79 aa2.87□□□□□ -1.95
VPS41-201ENST00000265745 RPS28P62857 69 aaKnown RBP2.85□□□□□ -1.95
VPS41-201ENST00000265745 OBSCNQ5VST9 7968 aa2.82□□□□□ -1.96
VPS41-201ENST00000265745 KRTAP5-8O75690 187 aa2.82□□□□□ -1.96
VPS41-201ENST00000265745 KRTAP6-2Q3LI66 62 aa2.81□□□□□ -1.96
VPS41-201ENST00000265745 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.8□□□□□ -1.96
VPS41-201ENST00000265745 MUC5BQ9HC84 5762 aaPredicted RBP2.72□□□□□ -1.97
VPS41-201ENST00000265745 AHNAKQ09666 5890 aaKnown RBP2.72□□□□□ -1.97
VPS41-201ENST00000265745 MUC5ACP98088 5654 aa2.71□□□□□ -1.98
VPS41-201ENST00000265745 KRTAP5-1Q6L8H4 278 aa2.64□□□□□ -1.99
VPS41-201ENST00000265745 KTN1-AS1Q86SY8 53 aa2.64□□□□□ -1.99
VPS41-201ENST00000265745 BRK1Q8WUW1 75 aa2.36□□□□□ -2.03
VPS41-201ENST00000265745 LCE1BQ5T7P3 118 aa2.35□□□□□ -2.03
VPS41-201ENST00000265745 KRTAP4-4Q9BYR3 166 aa2.33□□□□□ -2.04
VPS41-201ENST00000265745 LCE1CQ5T751 118 aa2.32□□□□□ -2.04
VPS41-201ENST00000265745 INE1O15225 51 aa2.05□□□□□ -2.08
VPS41-201ENST00000265745 KRTAP21-2Q3LI59 83 aa1.94□□□□□ -2.1
VPS41-201ENST00000265745 PHGR1C9JFL3 82 aa1.88□□□□□ -2.11
VPS41-201ENST00000265745 MUC19Q7Z5P9 8384 aa1.75□□□□□ -2.13
VPS41-201ENST00000265745 PRM1P04553 51 aa1.46□□□□□ -2.18
VPS41-201ENST00000265745 KRTAP21-1Q3LI58 79 aa1.44□□□□□ -2.18
VPS41-201ENST00000265745 MUC16Q8WXI7 14507 aa1.18□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 77.1 ms