RNA–Protein interactions for RNA: ENST00000263694.8

SNRNP40-201, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP40, Length 1,597 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-201ENST00000263694 KMT2DO14686 5537 aa3.83□□□□□ -1.8
SNRNP40-201ENST00000263694 KRTAP10-12P60413 245 aa3.83□□□□□ -1.8
SNRNP40-201ENST00000263694 LCE1EQ5T753 118 aa3.8□□□□□ -1.8
SNRNP40-201ENST00000263694 A0A0A0MQY5 61 aa3.79□□□□□ -1.8
SNRNP40-201ENST00000263694 KRTAP25-1Q3LHN0 102 aa3.79□□□□□ -1.8
SNRNP40-201ENST00000263694 KTN1-AS1Q86SY8 53 aa3.79□□□□□ -1.8
SNRNP40-201ENST00000263694 LCE3AQ5TA76 89 aa3.76□□□□□ -1.81
SNRNP40-201ENST00000263694 KRTAP2-2Q9BYT5 123 aa3.74□□□□□ -1.81
SNRNP40-201ENST00000263694 MACF1Q9UPN3 7388 aaKnown RBP3.73□□□□□ -1.81
SNRNP40-201ENST00000263694 KRTAP8-1Q8IUC2 63 aa3.71□□□□□ -1.82
SNRNP40-201ENST00000263694 PRAC1Q96KF2 57 aa3.69□□□□□ -1.82
SNRNP40-201ENST00000263694 SYNE2Q8WXH0 6885 aaKnown RBP3.66□□□□□ -1.82
SNRNP40-201ENST00000263694 KRTAP19-5Q3LI72 72 aa3.65□□□□□ -1.82
SNRNP40-201ENST00000263694 KRTAP19-7Q3SYF9 63 aa3.63□□□□□ -1.83
SNRNP40-201ENST00000263694 KRTAP5-1Q6L8H4 278 aa3.62□□□□□ -1.83
SNRNP40-201ENST00000263694 SPRR2FQ96RM1 72 aa3.62□□□□□ -1.83
SNRNP40-201ENST00000263694 KRTAP6-3Q3LI67 103 aa3.6□□□□□ -1.83
SNRNP40-201ENST00000263694 PP632Q6XCG6 107 aa3.59□□□□□ -1.83
SNRNP40-201ENST00000263694 KRTAP5-9P26371 169 aa3.59□□□□□ -1.84
SNRNP40-201ENST00000263694 KRTAP20-1Q3LI63 56 aa3.59□□□□□ -1.84
SNRNP40-201ENST00000263694 KRTAP12-3P60328 96 aa3.58□□□□□ -1.84
SNRNP40-201ENST00000263694 MT1EP04732 61 aa3.57□□□□□ -1.84
SNRNP40-201ENST00000263694 MUC12Q9UKN1 5478 aa3.56□□□□□ -1.84
SNRNP40-201ENST00000263694 NEBP20929 6669 aa3.56□□□□□ -1.84
SNRNP40-201ENST00000263694 KRTAP5-4Q6L8H1 288 aa3.55□□□□□ -1.84
SNRNP40-201ENST00000263694 KRTAP4-4Q9BYR3 166 aa3.49□□□□□ -1.85
SNRNP40-201ENST00000263694 MDN1Q9NU22 5596 aa3.49□□□□□ -1.85
SNRNP40-201ENST00000263694 MT1LQ93083 61 aa3.48□□□□□ -1.85
SNRNP40-201ENST00000263694 SPRR2EP22531 72 aa3.46□□□□□ -1.85
SNRNP40-201ENST00000263694 SPRR2BP35325 72 aa3.46□□□□□ -1.85
SNRNP40-201ENST00000263694 SPRR2AP35326 72 aa3.46□□□□□ -1.85
SNRNP40-201ENST00000263694 KRTAP19-3Q7Z4W3 81 aa3.45□□□□□ -1.86
SNRNP40-201ENST00000263694 GPR98Q8WXG9 6306 aa3.4□□□□□ -1.86
SNRNP40-201ENST00000263694 MT1GP13640 62 aa3.39□□□□□ -1.87
SNRNP40-201ENST00000263694 MT1MQ8N339 61 aa3.38□□□□□ -1.87
SNRNP40-201ENST00000263694 KRTAP4-3Q9BYR4 195 aa3.36□□□□□ -1.87
SNRNP40-201ENST00000263694 SPRR2DP22532 72 aa3.34□□□□□ -1.87
SNRNP40-201ENST00000263694 LCE3CQ5T5A8 94 aa3.34□□□□□ -1.88
SNRNP40-201ENST00000263694 MT3P25713 68 aa3.31□□□□□ -1.88
SNRNP40-201ENST00000263694 KRTAP2-3P0C7H8 128 aa3.3□□□□□ -1.88
SNRNP40-201ENST00000263694 KRTAP2-4Q9BYR9 128 aa3.3□□□□□ -1.88
SNRNP40-201ENST00000263694 DSTQ03001 7570 aaKnown RBP3.24□□□□□ -1.89
SNRNP40-201ENST00000263694 KRTAP9-6A8MVA2 160 aa3.23□□□□□ -1.89
SNRNP40-201ENST00000263694 SPRR5A0A1B0GTR4 108 aa3.16□□□□□ -1.9
SNRNP40-201ENST00000263694 KRTAP2-1Q9BYU5 128 aa3.15□□□□□ -1.91
SNRNP40-201ENST00000263694 OBSCNQ5VST9 7968 aa3.12□□□□□ -1.91
SNRNP40-201ENST00000263694 KRTAP5-5Q701N2 237 aaPredicted RBP3.04□□□□□ -1.92
SNRNP40-201ENST00000263694 KRTAP5-2Q701N4 177 aa2.98□□□□□ -1.93
SNRNP40-201ENST00000263694 LUZP6Q538Z0 58 aa2.96□□□□□ -1.94
SNRNP40-201ENST00000263694 KRTAP6-1Q3LI64 71 aa2.95□□□□□ -1.94
SNRNP40-201ENST00000263694 MT1AP04731 61 aa2.95□□□□□ -1.94
SNRNP40-201ENST00000263694 NDUFAF8A1L188 74 aa2.94□□□□□ -1.94
SNRNP40-201ENST00000263694 MT4P47944 62 aa2.94□□□□□ -1.94
SNRNP40-201ENST00000263694 SYNE1Q8NF91 8797 aaKnown RBP2.89□□□□□ -1.95
SNRNP40-201ENST00000263694 KRTAP12-4P60329 112 aa2.84□□□□□ -1.95
SNRNP40-201ENST00000263694 KRTAP5-10Q6L8G5 202 aa2.84□□□□□ -1.95
SNRNP40-201ENST00000263694 KRTAP5-7Q6L8G8 165 aa2.84□□□□□ -1.95
SNRNP40-201ENST00000263694 AHNAK2Q8IVF2 5795 aa2.83□□□□□ -1.96
SNRNP40-201ENST00000263694 HMCN1Q96RW7 5635 aa2.81□□□□□ -1.96
SNRNP40-201ENST00000263694 KRTAP20-2Q3LI61 65 aa2.8□□□□□ -1.96
SNRNP40-201ENST00000263694 LCE1FQ5T754 118 aa2.79□□□□□ -1.96
SNRNP40-201ENST00000263694 KRTAP6-2Q3LI66 62 aa2.74□□□□□ -1.97
SNRNP40-201ENST00000263694 AHNAKQ09666 5890 aaKnown RBP2.6□□□□□ -1.99
SNRNP40-201ENST00000263694 KRTAP5-8O75690 187 aa2.53□□□□□ -2
SNRNP40-201ENST00000263694 MUC5BQ9HC84 5762 aaPredicted RBP2.52□□□□□ -2.01
SNRNP40-201ENST00000263694 INE1O15225 51 aa2.52□□□□□ -2.01
SNRNP40-201ENST00000263694 LCE3DQ9BYE3 92 aa2.47□□□□□ -2.01
SNRNP40-201ENST00000263694 LCE1CQ5T751 118 aa2.45□□□□□ -2.02
SNRNP40-201ENST00000263694 LCE1BQ5T7P3 118 aa2.45□□□□□ -2.02
SNRNP40-201ENST00000263694 MUC5ACP98088 5654 aa2.45□□□□□ -2.02
SNRNP40-201ENST00000263694 LCE3EQ5T5B0 92 aa2.42□□□□□ -2.02
SNRNP40-201ENST00000263694 MUC19Q7Z5P9 8384 aa2.04□□□□□ -2.08
SNRNP40-201ENST00000263694 PRM1P04553 51 aa2.04□□□□□ -2.08
SNRNP40-201ENST00000263694 KRTAP21-2Q3LI59 83 aa1.93□□□□□ -2.1
SNRNP40-201ENST00000263694 PHGR1C9JFL3 82 aa1.68□□□□□ -2.14
SNRNP40-201ENST00000263694 KRTAP21-1Q3LI58 79 aa1.3□□□□□ -2.2
SNRNP40-201ENST00000263694 MUC16Q8WXI7 14507 aa1.1□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 168.3 ms