RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 KRTAP19-7Q3SYF9 63 aa4.9□□□□□ -1.63
SDC1-201ENST00000254351 FCGBPQ9Y6R7 5405 aaPredicted RBP4.88□□□□□ -1.63
SDC1-201ENST00000254351 LOC100996750A0A140TA64 210 aa4.88□□□□□ -1.63
SDC1-201ENST00000254351 KRTAP4-3Q9BYR4 195 aa4.82□□□□□ -1.64
SDC1-201ENST00000254351 SYNE1Q8NF91 8797 aaKnown RBP4.8□□□□□ -1.64
SDC1-201ENST00000254351 MUC12Q9UKN1 5478 aa4.78□□□□□ -1.64
SDC1-201ENST00000254351 MT1LQ93083 61 aa4.78□□□□□ -1.64
SDC1-201ENST00000254351 OBSCNQ5VST9 7968 aa4.75□□□□□ -1.65
SDC1-201ENST00000254351 MT1GP13640 62 aa4.73□□□□□ -1.65
SDC1-201ENST00000254351 KRTAP12-4P60329 112 aa4.72□□□□□ -1.65
SDC1-201ENST00000254351 MT1EP04732 61 aa4.7□□□□□ -1.66
SDC1-201ENST00000254351 KRTAP9-6A0A140TA67 174 aa4.63□□□□□ -1.67
SDC1-201ENST00000254351 KRTAP4-9Q9BYQ8 210 aa4.59□□□□□ -1.68
SDC1-201ENST00000254351 MACF1Q9UPN3 7388 aaKnown RBP4.57□□□□□ -1.68
SDC1-201ENST00000254351 LCE3BQ5TA77 95 aa4.52□□□□□ -1.69
SDC1-201ENST00000254351 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.46□□□□□ -1.7
SDC1-201ENST00000254351 SYNE2Q8WXH0 6885 aaKnown RBP4.45□□□□□ -1.7
SDC1-201ENST00000254351 SPRR2FQ96RM1 72 aa4.42□□□□□ -1.7
SDC1-201ENST00000254351 KRTAP5-9P26371 169 aa4.4□□□□□ -1.71
SDC1-201ENST00000254351 MT1MQ8N339 61 aa4.39□□□□□ -1.71
SDC1-201ENST00000254351 KRTAP6-3Q3LI67 103 aa4.34□□□□□ -1.71
SDC1-201ENST00000254351 KRTAP19-3Q7Z4W3 81 aa4.32□□□□□ -1.72
SDC1-201ENST00000254351 KRTAP9-7A8MTY7 169 aa4.31□□□□□ -1.72
SDC1-201ENST00000254351 KRTAP19-4Q3LI73 84 aa4.3□□□□□ -1.72
SDC1-201ENST00000254351 PRM1P04553 51 aa4.24□□□□□ -1.73
SDC1-201ENST00000254351 MDN1Q9NU22 5596 aa4.24□□□□□ -1.73
SDC1-201ENST00000254351 LCE1AQ5T7P2 110 aa4.24□□□□□ -1.73
SDC1-201ENST00000254351 LCE5AQ5TCM9 118 aa4.24□□□□□ -1.73
SDC1-201ENST00000254351 SPRR2EP22531 72 aa4.2□□□□□ -1.74
SDC1-201ENST00000254351 SPRR2BP35325 72 aa4.2□□□□□ -1.74
SDC1-201ENST00000254351 SPRR2AP35326 72 aa4.2□□□□□ -1.74
SDC1-201ENST00000254351 LCE3DQ9BYE3 92 aa4.18□□□□□ -1.74
SDC1-201ENST00000254351 KRTAP6-1Q3LI64 71 aa4.17□□□□□ -1.74
SDC1-201ENST00000254351 LCE3EQ5T5B0 92 aa4.12□□□□□ -1.75
SDC1-201ENST00000254351 KRTAP5-5Q701N2 237 aaPredicted RBP4.09□□□□□ -1.75
SDC1-201ENST00000254351 SPRR2DP22532 72 aa4.05□□□□□ -1.76
SDC1-201ENST00000254351 NEBP20929 6669 aa4.04□□□□□ -1.76
SDC1-201ENST00000254351 MT1AP04731 61 aa3.99□□□□□ -1.77
SDC1-201ENST00000254351 KRTAP6-2Q3LI66 62 aa3.95□□□□□ -1.78
SDC1-201ENST00000254351 KRTAP20-1Q3LI63 56 aa3.75□□□□□ -1.81
SDC1-201ENST00000254351 KRTAP2-2Q9BYT5 123 aa3.72□□□□□ -1.81
SDC1-201ENST00000254351 KRTAP9-4Q9BYQ2 154 aa3.66□□□□□ -1.82
SDC1-201ENST00000254351 KRTAP5-4Q6L8H1 288 aa3.66□□□□□ -1.82
SDC1-201ENST00000254351 LCE4AQ5TA78 99 aa3.6□□□□□ -1.83
SDC1-201ENST00000254351 MT3P25713 68 aa3.53□□□□□ -1.84
SDC1-201ENST00000254351 LCE1EQ5T753 118 aa3.52□□□□□ -1.85
SDC1-201ENST00000254351 MT4P47944 62 aa3.51□□□□□ -1.85
SDC1-201ENST00000254351 KRTAP4-6Q9BYQ5 205 aa3.48□□□□□ -1.85
SDC1-201ENST00000254351 LCE1DQ5T752 114 aa3.47□□□□□ -1.85
SDC1-201ENST00000254351 KRTAP20-2Q3LI61 65 aa3.42□□□□□ -1.86
SDC1-201ENST00000254351 HMCN1Q96RW7 5635 aa3.42□□□□□ -1.86
SDC1-201ENST00000254351 KRTAP5-2Q701N4 177 aa3.31□□□□□ -1.88
SDC1-201ENST00000254351 KRTAP5-3Q6L8H2 238 aa3.3□□□□□ -1.88
SDC1-201ENST00000254351 KRTAP4-11Q9BYQ6 195 aa3.26□□□□□ -1.89
SDC1-201ENST00000254351 MUC5ACP98088 5654 aa3.19□□□□□ -1.9
SDC1-201ENST00000254351 MUC19Q7Z5P9 8384 aa3.18□□□□□ -1.9
SDC1-201ENST00000254351 LCE1BQ5T7P3 118 aa3.13□□□□□ -1.91
SDC1-201ENST00000254351 AHNAK2Q8IVF2 5795 aa3.04□□□□□ -1.92
SDC1-201ENST00000254351 KRTAP5-10Q6L8G5 202 aa2.92□□□□□ -1.94
SDC1-201ENST00000254351 KRTAP5-8O75690 187 aa2.87□□□□□ -1.95
SDC1-201ENST00000254351 KRTAP5-1Q6L8H4 278 aa2.87□□□□□ -1.95
SDC1-201ENST00000254351 LCE1FQ5T754 118 aa2.87□□□□□ -1.95
SDC1-201ENST00000254351 GPR98Q8WXG9 6306 aa2.79□□□□□ -1.96
SDC1-201ENST00000254351 KRTAP5-7Q6L8G8 165 aa2.77□□□□□ -1.97
SDC1-201ENST00000254351 KRTAP4-4Q9BYR3 166 aa2.75□□□□□ -1.97
SDC1-201ENST00000254351 LCE1CQ5T751 118 aa2.74□□□□□ -1.97
SDC1-201ENST00000254351 KRTAP4-2Q9BYR5 136 aa2.74□□□□□ -1.97
SDC1-201ENST00000254351 KRTAP9-9Q9BYP9 154 aa2.63□□□□□ -1.99
SDC1-201ENST00000254351 KRTAP21-2Q3LI59 83 aa2.57□□□□□ -2
SDC1-201ENST00000254351 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.56□□□□□ -2
SDC1-201ENST00000254351 MUC5BQ9HC84 5762 aaPredicted RBP2.5□□□□□ -2.01
SDC1-201ENST00000254351 KRTAP21-1Q3LI58 79 aa2.48□□□□□ -2.01
SDC1-201ENST00000254351 KRTAP5-11Q6L8G4 156 aa2.42□□□□□ -2.02
SDC1-201ENST00000254351 KRTAP4-12Q9BQ66 201 aa2.42□□□□□ -2.02
SDC1-201ENST00000254351 AHNAKQ09666 5890 aaKnown RBP2.3□□□□□ -2.04
SDC1-201ENST00000254351 PHGR1C9JFL3 82 aa2.08□□□□□ -2.08
SDC1-201ENST00000254351 MUC16Q8WXI7 14507 aa1.34□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 19 ms