RNA–Protein interactions for RNA: ENST00000253754.7

PDLIM4-201, Transcript of PDZ and LIM domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM4, Length 2,282 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-201ENST00000253754 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.65□□□□□ -1.34
PDLIM4-201ENST00000253754 KRTAP4-7Q9BYR0 210 aa6.62□□□□□ -1.35
PDLIM4-201ENST00000253754 MT1EP04732 61 aa6.59□□□□□ -1.35
PDLIM4-201ENST00000253754 MDN1Q9NU22 5596 aa6.56□□□□□ -1.36
PDLIM4-201ENST00000253754 KRTAP9-6A8MVA2 160 aa6.56□□□□□ -1.36
PDLIM4-201ENST00000253754 MT1LQ93083 61 aa6.55□□□□□ -1.36
PDLIM4-201ENST00000253754 SPRR2FQ96RM1 72 aa6.48□□□□□ -1.37
PDLIM4-201ENST00000253754 KRTAP9-7A8MTY7 169 aa6.37□□□□□ -1.39
PDLIM4-201ENST00000253754 KRTAP5-9P26371 169 aa6.32□□□□□ -1.4
PDLIM4-201ENST00000253754 KRTAP19-4Q3LI73 84 aa6.32□□□□□ -1.4
PDLIM4-201ENST00000253754 KRTAP6-3Q3LI67 103 aa6.3□□□□□ -1.4
PDLIM4-201ENST00000253754 KRTAP19-3Q7Z4W3 81 aa6.27□□□□□ -1.41
PDLIM4-201ENST00000253754 KRTAP4-3Q9BYR4 195 aa6.27□□□□□ -1.41
PDLIM4-201ENST00000253754 DSTQ03001 7570 aaKnown RBP6.25□□□□□ -1.41
PDLIM4-201ENST00000253754 MT1GP13640 62 aa6.21□□□□□ -1.42
PDLIM4-201ENST00000253754 LOC100996750A0A140TA64 210 aa6.18□□□□□ -1.42
PDLIM4-201ENST00000253754 SPRR2EP22531 72 aa6.18□□□□□ -1.42
PDLIM4-201ENST00000253754 SPRR2BP35325 72 aa6.18□□□□□ -1.42
PDLIM4-201ENST00000253754 SPRR2AP35326 72 aa6.18□□□□□ -1.42
PDLIM4-201ENST00000253754 MT1MQ8N339 61 aa6.17□□□□□ -1.42
PDLIM4-201ENST00000253754 KRTAP2-3P0C7H8 128 aa6.16□□□□□ -1.42
PDLIM4-201ENST00000253754 KRTAP2-4Q9BYR9 128 aa6.16□□□□□ -1.42
PDLIM4-201ENST00000253754 KRTAP2-1Q9BYU5 128 aa6.16□□□□□ -1.42
PDLIM4-201ENST00000253754 LCE1AQ5T7P2 110 aa6.16□□□□□ -1.42
PDLIM4-201ENST00000253754 LCE5AQ5TCM9 118 aa6.15□□□□□ -1.42
PDLIM4-201ENST00000253754 NEBP20929 6669 aa6.09□□□□□ -1.43
PDLIM4-201ENST00000253754 SPRR2DP22532 72 aa5.94□□□□□ -1.46
PDLIM4-201ENST00000253754 LCE3BQ5TA77 95 aa5.72□□□□□ -1.49
PDLIM4-201ENST00000253754 KRTAP20-1Q3LI63 56 aa5.59□□□□□ -1.51
PDLIM4-201ENST00000253754 KRTAP6-1Q3LI64 71 aa5.57□□□□□ -1.52
PDLIM4-201ENST00000253754 KRTAP5-5Q701N2 237 aaPredicted RBP5.52□□□□□ -1.53
PDLIM4-201ENST00000253754 SYNE1Q8NF91 8797 aaKnown RBP5.49□□□□□ -1.53
PDLIM4-201ENST00000253754 MT1AP04731 61 aa5.48□□□□□ -1.53
PDLIM4-201ENST00000253754 KRTAP4-9Q9BYQ8 210 aa5.48□□□□□ -1.53
PDLIM4-201ENST00000253754 KRTAP2-2Q9BYT5 123 aa5.45□□□□□ -1.54
PDLIM4-201ENST00000253754 KRTAP12-4P60329 112 aa5.41□□□□□ -1.54
PDLIM4-201ENST00000253754 MT4P47944 62 aa5.28□□□□□ -1.56
PDLIM4-201ENST00000253754 KRTAP5-4Q6L8H1 288 aa5.23□□□□□ -1.57
PDLIM4-201ENST00000253754 HMCN1Q96RW7 5635 aa5.23□□□□□ -1.57
PDLIM4-201ENST00000253754 KRTAP4-6Q9BYQ5 205 aa5.18□□□□□ -1.58
PDLIM4-201ENST00000253754 KRTAP9-4Q9BYQ2 154 aa5.18□□□□□ -1.58
PDLIM4-201ENST00000253754 LCE3DQ9BYE3 92 aa5.16□□□□□ -1.58
PDLIM4-201ENST00000253754 LCE1DQ5T752 114 aa5.15□□□□□ -1.58
PDLIM4-201ENST00000253754 LCE4AQ5TA78 99 aa5.12□□□□□ -1.59
PDLIM4-201ENST00000253754 OBSCNQ5VST9 7968 aa5.06□□□□□ -1.6
PDLIM4-201ENST00000253754 LCE3EQ5T5B0 92 aa5.06□□□□□ -1.6
PDLIM4-201ENST00000253754 KRTAP6-2Q3LI66 62 aa5.04□□□□□ -1.6
PDLIM4-201ENST00000253754 KRTAP20-2Q3LI61 65 aa4.95□□□□□ -1.62
PDLIM4-201ENST00000253754 MT3P25713 68 aa4.93□□□□□ -1.62
PDLIM4-201ENST00000253754 PRM1P04553 51 aa4.77□□□□□ -1.65
PDLIM4-201ENST00000253754 KRTAP5-3Q6L8H2 238 aa4.75□□□□□ -1.65
PDLIM4-201ENST00000253754 KRTAP5-2Q701N4 177 aa4.75□□□□□ -1.65
PDLIM4-201ENST00000253754 AHNAK2Q8IVF2 5795 aa4.64□□□□□ -1.67
PDLIM4-201ENST00000253754 GPR98Q8WXG9 6306 aa4.41□□□□□ -1.7
PDLIM4-201ENST00000253754 KRTAP4-11Q9BYQ6 195 aa4.36□□□□□ -1.71
PDLIM4-201ENST00000253754 KRTAP5-10Q6L8G5 202 aa4.34□□□□□ -1.71
PDLIM4-201ENST00000253754 LCE1EQ5T753 118 aa4.23□□□□□ -1.73
PDLIM4-201ENST00000253754 KRTAP5-8O75690 187 aa4.19□□□□□ -1.74
PDLIM4-201ENST00000253754 MUC5ACP98088 5654 aa4.19□□□□□ -1.74
PDLIM4-201ENST00000253754 KRTAP5-1Q6L8H4 278 aa4.14□□□□□ -1.75
PDLIM4-201ENST00000253754 LCE1BQ5T7P3 118 aa4.07□□□□□ -1.76
PDLIM4-201ENST00000253754 KRTAP5-7Q6L8G8 165 aa3.98□□□□□ -1.77
PDLIM4-201ENST00000253754 KRTAP4-2Q9BYR5 136 aa3.98□□□□□ -1.77
PDLIM4-201ENST00000253754 LCE1CQ5T751 118 aa3.96□□□□□ -1.78
PDLIM4-201ENST00000253754 MUC5BQ9HC84 5762 aaPredicted RBP3.91□□□□□ -1.78
PDLIM4-201ENST00000253754 KRTAP9-9Q9BYP9 154 aa3.81□□□□□ -1.8
PDLIM4-201ENST00000253754 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.68□□□□□ -1.82
PDLIM4-201ENST00000253754 KRTAP21-2Q3LI59 83 aa3.6□□□□□ -1.83
PDLIM4-201ENST00000253754 AHNAKQ09666 5890 aaKnown RBP3.54□□□□□ -1.84
PDLIM4-201ENST00000253754 KRTAP4-12Q9BQ66 201 aa3.5□□□□□ -1.85
PDLIM4-201ENST00000253754 KRTAP5-11Q6L8G4 156 aa3.47□□□□□ -1.85
PDLIM4-201ENST00000253754 KRTAP4-4Q9BYR3 166 aa3.33□□□□□ -1.88
PDLIM4-201ENST00000253754 LCE1FQ5T754 118 aa3.27□□□□□ -1.89
PDLIM4-201ENST00000253754 KRTAP21-1Q3LI58 79 aa3.12□□□□□ -1.91
PDLIM4-201ENST00000253754 MUC19Q7Z5P9 8384 aa3.01□□□□□ -1.93
PDLIM4-201ENST00000253754 PHGR1C9JFL3 82 aa3□□□□□ -1.93
PDLIM4-201ENST00000253754 MUC16Q8WXI7 14507 aa1.93□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 56 ms