RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 V9GYY9 64 aa8□□□□□ -1.13
LSM4-201ENST00000252816 Q1T7F1 81 aa7.99□□□□□ -1.13
LSM4-201ENST00000252816 KRTAP4-9Q9BYQ8 210 aa7.98□□□□□ -1.13
LSM4-201ENST00000252816 KRTAP4-3Q9BYR4 195 aa7.97□□□□□ -1.13
LSM4-201ENST00000252816 KRTAP12-3P60328 96 aa7.96□□□□□ -1.14
LSM4-201ENST00000252816 KRTAP25-1Q3LHN0 102 aa7.89□□□□□ -1.15
LSM4-201ENST00000252816 K7ERS5 55 aa7.88□□□□□ -1.15
LSM4-201ENST00000252816 KRTAP4-7Q9BYR0 210 aa7.83□□□□□ -1.16
LSM4-201ENST00000252816 LCE1DQ5T752 114 aa7.8□□□□□ -1.16
LSM4-201ENST00000252816 LCE4AQ5TA78 99 aa7.79□□□□□ -1.16
LSM4-201ENST00000252816 A6NED7 52 aa7.72□□□□□ -1.17
LSM4-201ENST00000252816 MT4P47944 62 aa7.72□□□□□ -1.17
LSM4-201ENST00000252816 KRTAP5-4Q6L8H1 288 aa7.7□□□□□ -1.18
LSM4-201ENST00000252816 HMCN1Q96RW7 5635 aa7.64□□□□□ -1.19
LSM4-201ENST00000252816 RPS28P62857 69 aaKnown RBP7.61□□□□□ -1.19
LSM4-201ENST00000252816 KRTAP23-1A1A580 65 aa7.59□□□□□ -1.19
LSM4-201ENST00000252816 PCP4P48539 62 aa7.57□□□□□ -1.2
LSM4-201ENST00000252816 GPR98Q8WXG9 6306 aa7.57□□□□□ -1.2
LSM4-201ENST00000252816 KRTAP4-6Q9BYQ5 205 aa7.54□□□□□ -1.2
LSM4-201ENST00000252816 SVIPQ8NHG7 77 aa7.53□□□□□ -1.2
LSM4-201ENST00000252816 CDC42SE1Q9NRR8 79 aa7.51□□□□□ -1.21
LSM4-201ENST00000252816 KRTAP19-4Q3LI73 84 aa7.46□□□□□ -1.22
LSM4-201ENST00000252816 KRTAP15-1Q3LI76 137 aa7.46□□□□□ -1.22
LSM4-201ENST00000252816 KRTAP5-5Q701N2 237 aaPredicted RBP7.46□□□□□ -1.22
LSM4-201ENST00000252816 ROMO1P60602 79 aa7.41□□□□□ -1.22
LSM4-201ENST00000252816 LOC100996750A0A140TA64 210 aa7.4□□□□□ -1.22
LSM4-201ENST00000252816 LCE3CQ5T5A8 94 aa7.33□□□□□ -1.24
LSM4-201ENST00000252816 AHNAK2Q8IVF2 5795 aa7.31□□□□□ -1.24
LSM4-201ENST00000252816 KRTAP20-2Q3LI61 65 aa7.26□□□□□ -1.25
LSM4-201ENST00000252816 SPRR5A0A1B0GTR4 108 aa7.21□□□□□ -1.26
LSM4-201ENST00000252816 KRTAP12-4P60329 112 aa7.2□□□□□ -1.26
LSM4-201ENST00000252816 KRTAP5-10Q6L8G5 202 aa7.2□□□□□ -1.26
LSM4-201ENST00000252816 SYNE1Q8NF91 8797 aaKnown RBP7.13□□□□□ -1.27
LSM4-201ENST00000252816 KRTAP5-3Q6L8H2 238 aa7.06□□□□□ -1.28
LSM4-201ENST00000252816 KRTAP9-6A8MVA2 160 aa6.97□□□□□ -1.29
LSM4-201ENST00000252816 MT1AP04731 61 aa6.95□□□□□ -1.3
LSM4-201ENST00000252816 KRTAP6-1Q3LI64 71 aa6.94□□□□□ -1.3
LSM4-201ENST00000252816 KRTAP5-7Q6L8G8 165 aa6.9□□□□□ -1.3
LSM4-201ENST00000252816 KRTAP5-2Q701N4 177 aa6.77□□□□□ -1.33
LSM4-201ENST00000252816 KRTAP9-4Q9BYQ2 154 aa6.72□□□□□ -1.33
LSM4-201ENST00000252816 BRK1Q8WUW1 75 aa6.69□□□□□ -1.34
LSM4-201ENST00000252816 KRTAP6-2Q3LI66 62 aa6.6□□□□□ -1.35
LSM4-201ENST00000252816 KRTAP4-11Q9BYQ6 195 aa6.6□□□□□ -1.35
LSM4-201ENST00000252816 KRTAP5-8O75690 187 aa6.39□□□□□ -1.39
LSM4-201ENST00000252816 MT3P25713 68 aa6.34□□□□□ -1.39
LSM4-201ENST00000252816 PMAIP1Q13794 54 aa6.28□□□□□ -1.4
LSM4-201ENST00000252816 OBSCNQ5VST9 7968 aa6.23□□□□□ -1.41
LSM4-201ENST00000252816 PRAC1Q96KF2 57 aa6.11□□□□□ -1.43
LSM4-201ENST00000252816 KRTAP5-1Q6L8H4 278 aa6.06□□□□□ -1.44
LSM4-201ENST00000252816 KRTAP9-9Q9BYP9 154 aa6.01□□□□□ -1.45
LSM4-201ENST00000252816 PRO0628Q9UI54 55 aa5.99□□□□□ -1.45
LSM4-201ENST00000252816 MUC5BQ9HC84 5762 aaPredicted RBP5.99□□□□□ -1.45
LSM4-201ENST00000252816 MUC5ACP98088 5654 aa5.96□□□□□ -1.46
LSM4-201ENST00000252816 AHNAKQ09666 5890 aaKnown RBP5.92□□□□□ -1.46
LSM4-201ENST00000252816 LCE1EQ5T753 118 aa5.8□□□□□ -1.48
LSM4-201ENST00000252816 KTN1-AS1Q86SY8 53 aa5.57□□□□□ -1.52
LSM4-201ENST00000252816 KRTAP4-2Q9BYR5 136 aa5.51□□□□□ -1.53
LSM4-201ENST00000252816 LCE1BQ5T7P3 118 aa5.47□□□□□ -1.53
LSM4-201ENST00000252816 H3BS24 57 aa5.39□□□□□ -1.55
LSM4-201ENST00000252816 LCE1CQ5T751 118 aa5.39□□□□□ -1.55
LSM4-201ENST00000252816 LCE3DQ9BYE3 92 aa5.29□□□□□ -1.56
LSM4-201ENST00000252816 A0A0A0MQY5 61 aa5.25□□□□□ -1.57
LSM4-201ENST00000252816 LUZP6Q538Z0 58 aa5.07□□□□□ -1.6
LSM4-201ENST00000252816 LCE3EQ5T5B0 92 aa4.99□□□□□ -1.61
LSM4-201ENST00000252816 KRTAP4-12Q9BQ66 201 aa4.97□□□□□ -1.61
LSM4-201ENST00000252816 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.93□□□□□ -1.62
LSM4-201ENST00000252816 KRTAP5-11Q6L8G4 156 aa4.88□□□□□ -1.63
LSM4-201ENST00000252816 LCE1FQ5T754 118 aa4.7□□□□□ -1.66
LSM4-201ENST00000252816 KRTAP21-2Q3LI59 83 aa4.57□□□□□ -1.68
LSM4-201ENST00000252816 NDUFAF8A1L188 74 aa4.3□□□□□ -1.72
LSM4-201ENST00000252816 PHGR1C9JFL3 82 aa4.21□□□□□ -1.74
LSM4-201ENST00000252816 KRTAP4-4Q9BYR3 166 aa4.19□□□□□ -1.74
LSM4-201ENST00000252816 MUC19Q7Z5P9 8384 aa3.86□□□□□ -1.79
LSM4-201ENST00000252816 PRM1P04553 51 aa3.82□□□□□ -1.8
LSM4-201ENST00000252816 INE1O15225 51 aa3.51□□□□□ -1.85
LSM4-201ENST00000252816 KRTAP21-1Q3LI58 79 aa3.15□□□□□ -1.91
LSM4-201ENST00000252816 MUC16Q8WXI7 14507 aa2.77□□□□□ -1.97
Retrieved 77 of 20,778 RNA–protein pairs in 13.4 ms