RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 NDUFAF8A1L188 74 aa6.48□□□□□ -1.37
VRK1-201ENST00000216639 LCE4AQ5TA78 99 aa6.46□□□□□ -1.38
VRK1-201ENST00000216639 KRTAP4-2Q9BYR5 136 aa6.45□□□□□ -1.38
VRK1-201ENST00000216639 FCGBPQ9Y6R7 5405 aaPredicted RBP6.39□□□□□ -1.39
VRK1-201ENST00000216639 KMT2DO14686 5537 aa6.38□□□□□ -1.39
VRK1-201ENST00000216639 KRTAP19-7Q3SYF9 63 aa6.35□□□□□ -1.39
VRK1-201ENST00000216639 KRTAP9-7A8MTY7 169 aa6.32□□□□□ -1.4
VRK1-201ENST00000216639 KRTAP19-4Q3LI73 84 aa6.31□□□□□ -1.4
VRK1-201ENST00000216639 LCE3CQ5T5A8 94 aa6.25□□□□□ -1.41
VRK1-201ENST00000216639 MT1EP04732 61 aa6.24□□□□□ -1.41
VRK1-201ENST00000216639 KRTAP4-11Q9BYQ6 195 aa6.23□□□□□ -1.41
VRK1-201ENST00000216639 MACF1Q9UPN3 7388 aaKnown RBP6.16□□□□□ -1.42
VRK1-201ENST00000216639 MT1LQ93083 61 aa6.15□□□□□ -1.42
VRK1-201ENST00000216639 KRTAP5-3Q6L8H2 238 aa6.07□□□□□ -1.44
VRK1-201ENST00000216639 SYNE2Q8WXH0 6885 aaKnown RBP6.06□□□□□ -1.44
VRK1-201ENST00000216639 LCE5AQ5TCM9 118 aa6.03□□□□□ -1.44
VRK1-201ENST00000216639 KRTAP19-3Q7Z4W3 81 aa5.96□□□□□ -1.45
VRK1-201ENST00000216639 SPRR2FQ96RM1 72 aa5.96□□□□□ -1.45
VRK1-201ENST00000216639 MT1GP13640 62 aa5.94□□□□□ -1.46
VRK1-201ENST00000216639 KRTAP6-3Q3LI67 103 aa5.88□□□□□ -1.47
VRK1-201ENST00000216639 KRTAP9-6A8MVA2 160 aa5.86□□□□□ -1.47
VRK1-201ENST00000216639 MT1MQ8N339 61 aa5.86□□□□□ -1.47
VRK1-201ENST00000216639 A0A0A0MQY5 61 aa5.8□□□□□ -1.48
VRK1-201ENST00000216639 MUC12Q9UKN1 5478 aa5.8□□□□□ -1.48
VRK1-201ENST00000216639 KRTAP5-9P26371 169 aa5.79□□□□□ -1.48
VRK1-201ENST00000216639 KRTAP4-3Q9BYR4 195 aa5.74□□□□□ -1.49
VRK1-201ENST00000216639 LCE1AQ5T7P2 110 aa5.64□□□□□ -1.51
VRK1-201ENST00000216639 NEBP20929 6669 aa5.64□□□□□ -1.51
VRK1-201ENST00000216639 MDN1Q9NU22 5596 aa5.62□□□□□ -1.51
VRK1-201ENST00000216639 SPRR2EP22531 72 aa5.6□□□□□ -1.51
VRK1-201ENST00000216639 SPRR2BP35325 72 aa5.6□□□□□ -1.51
VRK1-201ENST00000216639 SPRR2AP35326 72 aa5.6□□□□□ -1.51
VRK1-201ENST00000216639 KRTAP2-3P0C7H8 128 aa5.56□□□□□ -1.52
VRK1-201ENST00000216639 KRTAP2-4Q9BYR9 128 aa5.56□□□□□ -1.52
VRK1-201ENST00000216639 KRTAP2-1Q9BYU5 128 aa5.56□□□□□ -1.52
VRK1-201ENST00000216639 SPRR2DP22532 72 aa5.4□□□□□ -1.55
VRK1-201ENST00000216639 INE1O15225 51 aa5.37□□□□□ -1.55
VRK1-201ENST00000216639 DSTQ03001 7570 aaKnown RBP5.36□□□□□ -1.55
VRK1-201ENST00000216639 KRTAP20-1Q3LI63 56 aa5.34□□□□□ -1.56
VRK1-201ENST00000216639 KRTAP5-5Q701N2 237 aaPredicted RBP5.24□□□□□ -1.57
VRK1-201ENST00000216639 MT1AP04731 61 aa5.23□□□□□ -1.57
VRK1-201ENST00000216639 KRTAP6-1Q3LI64 71 aa5.17□□□□□ -1.58
VRK1-201ENST00000216639 KRTAP2-2Q9BYT5 123 aa5.1□□□□□ -1.59
VRK1-201ENST00000216639 SYNE1Q8NF91 8797 aaKnown RBP4.9□□□□□ -1.62
VRK1-201ENST00000216639 KRTAP5-4Q6L8H1 288 aa4.89□□□□□ -1.63
VRK1-201ENST00000216639 KRTAP12-4P60329 112 aa4.86□□□□□ -1.63
VRK1-201ENST00000216639 MT3P25713 68 aa4.76□□□□□ -1.65
VRK1-201ENST00000216639 LCE3DQ9BYE3 92 aa4.75□□□□□ -1.65
VRK1-201ENST00000216639 KRTAP6-2Q3LI66 62 aa4.74□□□□□ -1.65
VRK1-201ENST00000216639 MT4P47944 62 aa4.66□□□□□ -1.66
VRK1-201ENST00000216639 LCE3EQ5T5B0 92 aa4.64□□□□□ -1.67
VRK1-201ENST00000216639 HMCN1Q96RW7 5635 aa4.58□□□□□ -1.68
VRK1-201ENST00000216639 KRTAP20-2Q3LI61 65 aa4.58□□□□□ -1.68
VRK1-201ENST00000216639 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.49□□□□□ -1.69
VRK1-201ENST00000216639 KRTAP5-2Q701N4 177 aa4.47□□□□□ -1.69
VRK1-201ENST00000216639 GPR98Q8WXG9 6306 aa4.36□□□□□ -1.71
VRK1-201ENST00000216639 AHNAK2Q8IVF2 5795 aa4.33□□□□□ -1.72
VRK1-201ENST00000216639 OBSCNQ5VST9 7968 aa4.27□□□□□ -1.73
VRK1-201ENST00000216639 KRTAP5-10Q6L8G5 202 aa4.16□□□□□ -1.74
VRK1-201ENST00000216639 PRM1P04553 51 aa4.15□□□□□ -1.74
VRK1-201ENST00000216639 KRTAP5-11Q6L8G4 156 aa4.13□□□□□ -1.75
VRK1-201ENST00000216639 LCE1EQ5T753 118 aa4.05□□□□□ -1.76
VRK1-201ENST00000216639 KRTAP5-7Q6L8G8 165 aa3.95□□□□□ -1.78
VRK1-201ENST00000216639 LCE1BQ5T7P3 118 aa3.83□□□□□ -1.8
VRK1-201ENST00000216639 KRTAP5-1Q6L8H4 278 aa3.83□□□□□ -1.8
VRK1-201ENST00000216639 KRTAP5-8O75690 187 aa3.8□□□□□ -1.8
VRK1-201ENST00000216639 LCE1CQ5T751 118 aa3.78□□□□□ -1.8
VRK1-201ENST00000216639 MUC5ACP98088 5654 aa3.76□□□□□ -1.81
VRK1-201ENST00000216639 LCE1FQ5T754 118 aa3.7□□□□□ -1.82
VRK1-201ENST00000216639 KRTAP4-4Q9BYR3 166 aa3.67□□□□□ -1.82
VRK1-201ENST00000216639 MUC5BQ9HC84 5762 aaPredicted RBP3.52□□□□□ -1.85
VRK1-201ENST00000216639 AHNAKQ09666 5890 aaKnown RBP3.46□□□□□ -1.86
VRK1-201ENST00000216639 KRTAP21-2Q3LI59 83 aa3.37□□□□□ -1.87
VRK1-201ENST00000216639 PHGR1C9JFL3 82 aa2.83□□□□□ -1.96
VRK1-201ENST00000216639 KRTAP21-1Q3LI58 79 aa2.56□□□□□ -2
VRK1-201ENST00000216639 MUC19Q7Z5P9 8384 aa2.47□□□□□ -2.01
VRK1-201ENST00000216639 MUC16Q8WXI7 14507 aa1.83□□□□□ -2.12
Retrieved 77 of 20,778 RNA–protein pairs in 75.4 ms