RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 KRTAP12-3P60328 96 aa3.21□□□□□ -1.9
VAMP3-201ENST00000054666 USH2AO75445 5202 aa3.15□□□□□ -1.91
VAMP3-201ENST00000054666 KRTAP4-11Q9BYQ6 195 aa3.12□□□□□ -1.91
VAMP3-201ENST00000054666 KRTAP19-5Q3LI72 72 aa3.09□□□□□ -1.91
VAMP3-201ENST00000054666 KMT2DO14686 5537 aa3.05□□□□□ -1.92
VAMP3-201ENST00000054666 LCE5AQ5TCM9 118 aa3.04□□□□□ -1.92
VAMP3-201ENST00000054666 SSPOA2VEC9 5147 aa3.03□□□□□ -1.92
VAMP3-201ENST00000054666 KRTAP19-6Q3LI70 58 aa3.03□□□□□ -1.93
VAMP3-201ENST00000054666 LCE3CQ5T5A8 94 aa3□□□□□ -1.93
VAMP3-201ENST00000054666 KRTAP19-7Q3SYF9 63 aa2.98□□□□□ -1.93
VAMP3-201ENST00000054666 MT1EP04732 61 aa2.93□□□□□ -1.94
VAMP3-201ENST00000054666 FSIP2Q5CZC0 6907 aa2.9□□□□□ -1.94
VAMP3-201ENST00000054666 MT1LQ93083 61 aa2.9□□□□□ -1.95
VAMP3-201ENST00000054666 HMCN1Q96RW7 5635 aa2.87□□□□□ -1.95
VAMP3-201ENST00000054666 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.87□□□□□ -1.95
VAMP3-201ENST00000054666 FCGBPQ9Y6R7 5405 aaPredicted RBP2.83□□□□□ -1.96
VAMP3-201ENST00000054666 KRTAP9-6A8MVA2 160 aa2.82□□□□□ -1.96
VAMP3-201ENST00000054666 KRTAP5-9P26371 169 aa2.8□□□□□ -1.96
VAMP3-201ENST00000054666 KRTAP19-3Q7Z4W3 81 aa2.78□□□□□ -1.96
VAMP3-201ENST00000054666 INE1O15225 51 aa2.77□□□□□ -1.97
VAMP3-201ENST00000054666 MT1GP13640 62 aa2.76□□□□□ -1.97
VAMP3-201ENST00000054666 SPRR2FQ96RM1 72 aa2.75□□□□□ -1.97
VAMP3-201ENST00000054666 MT1MQ8N339 61 aa2.74□□□□□ -1.97
VAMP3-201ENST00000054666 MUC12Q9UKN1 5478 aa2.73□□□□□ -1.97
VAMP3-201ENST00000054666 MACF1Q9UPN3 7388 aaKnown RBP2.72□□□□□ -1.97
VAMP3-201ENST00000054666 KRTAP2-3P0C7H8 128 aa2.7□□□□□ -1.98
VAMP3-201ENST00000054666 KRTAP2-4Q9BYR9 128 aa2.7□□□□□ -1.98
VAMP3-201ENST00000054666 KRTAP2-1Q9BYU5 128 aa2.7□□□□□ -1.98
VAMP3-201ENST00000054666 KRTAP4-3Q9BYR4 195 aa2.7□□□□□ -1.98
VAMP3-201ENST00000054666 CRCT1Q9UGL9 99 aa2.67□□□□□ -1.98
VAMP3-201ENST00000054666 SYNE2Q8WXH0 6885 aaKnown RBP2.61□□□□□ -1.99
VAMP3-201ENST00000054666 LCE1AQ5T7P2 110 aa2.56□□□□□ -2
VAMP3-201ENST00000054666 SPRR2EP22531 72 aa2.55□□□□□ -2
VAMP3-201ENST00000054666 SPRR2BP35325 72 aa2.55□□□□□ -2
VAMP3-201ENST00000054666 SPRR2AP35326 72 aa2.55□□□□□ -2
VAMP3-201ENST00000054666 DSTQ03001 7570 aaKnown RBP2.54□□□□□ -2
VAMP3-201ENST00000054666 MDN1Q9NU22 5596 aa2.54□□□□□ -2
VAMP3-201ENST00000054666 KRTAP5-4Q6L8H1 288 aa2.48□□□□□ -2.01
VAMP3-201ENST00000054666 MT1AP04731 61 aa2.46□□□□□ -2.01
VAMP3-201ENST00000054666 KRTAP6-3Q3LI67 103 aa2.46□□□□□ -2.01
VAMP3-201ENST00000054666 SPRR2DP22532 72 aa2.45□□□□□ -2.02
VAMP3-201ENST00000054666 KRTAP6-1Q3LI64 71 aa2.44□□□□□ -2.02
VAMP3-201ENST00000054666 LCE1FQ5T754 118 aa2.44□□□□□ -2.02
VAMP3-201ENST00000054666 KRTAP5-5Q701N2 237 aaPredicted RBP2.43□□□□□ -2.02
VAMP3-201ENST00000054666 KRTAP12-4P60329 112 aa2.37□□□□□ -2.03
VAMP3-201ENST00000054666 SYNE1Q8NF91 8797 aaKnown RBP2.33□□□□□ -2.04
VAMP3-201ENST00000054666 GPR98Q8WXG9 6306 aa2.3□□□□□ -2.04
VAMP3-201ENST00000054666 NEBP20929 6669 aa2.3□□□□□ -2.04
VAMP3-201ENST00000054666 LCE3DQ9BYE3 92 aa2.3□□□□□ -2.04
VAMP3-201ENST00000054666 KRTAP2-2Q9BYT5 123 aa2.29□□□□□ -2.04
VAMP3-201ENST00000054666 LCE3EQ5T5B0 92 aa2.26□□□□□ -2.05
VAMP3-201ENST00000054666 KRTAP5-2Q701N4 177 aa2.24□□□□□ -2.05
VAMP3-201ENST00000054666 KRTAP4-4Q9BYR3 166 aa2.24□□□□□ -2.05
VAMP3-201ENST00000054666 MT3P25713 68 aa2.23□□□□□ -2.05
VAMP3-201ENST00000054666 KRTAP6-2Q3LI66 62 aa2.22□□□□□ -2.05
VAMP3-201ENST00000054666 KRTAP5-8O75690 187 aa2.21□□□□□ -2.06
VAMP3-201ENST00000054666 KRTAP5-1Q6L8H4 278 aa2.18□□□□□ -2.06
VAMP3-201ENST00000054666 KRTAP20-1Q3LI63 56 aa2.14□□□□□ -2.07
VAMP3-201ENST00000054666 MT4P47944 62 aa2.13□□□□□ -2.07
VAMP3-201ENST00000054666 PRM1P04553 51 aa2.09□□□□□ -2.08
VAMP3-201ENST00000054666 KRTAP20-2Q3LI61 65 aa2.09□□□□□ -2.08
VAMP3-201ENST00000054666 OBSCNQ5VST9 7968 aa2.08□□□□□ -2.08
VAMP3-201ENST00000054666 LCE1EQ5T753 118 aa2.05□□□□□ -2.08
VAMP3-201ENST00000054666 MUC5BQ9HC84 5762 aaPredicted RBP2.05□□□□□ -2.08
VAMP3-201ENST00000054666 KRTAP5-11Q6L8G4 156 aa2.02□□□□□ -2.09
VAMP3-201ENST00000054666 AHNAKQ09666 5890 aaKnown RBP1.9□□□□□ -2.11
VAMP3-201ENST00000054666 KRTAP5-7Q6L8G8 165 aa1.83□□□□□ -2.12
VAMP3-201ENST00000054666 MUC5ACP98088 5654 aa1.82□□□□□ -2.12
VAMP3-201ENST00000054666 LCE1BQ5T7P3 118 aa1.8□□□□□ -2.12
VAMP3-201ENST00000054666 AHNAK2Q8IVF2 5795 aa1.78□□□□□ -2.12
VAMP3-201ENST00000054666 KRTAP5-10Q6L8G5 202 aa1.75□□□□□ -2.13
VAMP3-201ENST00000054666 LCE1CQ5T751 118 aa1.74□□□□□ -2.13
VAMP3-201ENST00000054666 KRTAP21-2Q3LI59 83 aa1.58□□□□□ -2.16
VAMP3-201ENST00000054666 PHGR1C9JFL3 82 aa1.3□□□□□ -2.2
VAMP3-201ENST00000054666 MUC19Q7Z5P9 8384 aa1.29□□□□□ -2.2
VAMP3-201ENST00000054666 KRTAP21-1Q3LI58 79 aa1.28□□□□□ -2.2
VAMP3-201ENST00000054666 MUC16Q8WXI7 14507 aa0.88□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 76.9 ms