RNA–Protein interactions for RNA: ENST00000035307.6

CHPF2-201, Transcript of chondroitin polymerizing factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHPF2, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHPF2-201ENST00000035307 MACF1Q9UPN3 7388 aaKnown RBP4.3□□□□□ -1.72
CHPF2-201ENST00000035307 KRTAP19-6Q3LI70 58 aa4.22□□□□□ -1.73
CHPF2-201ENST00000035307 KRTAP4-3Q9BYR4 195 aa4.2□□□□□ -1.74
CHPF2-201ENST00000035307 MT1GP13640 62 aa4.19□□□□□ -1.74
CHPF2-201ENST00000035307 SPRR2EP22531 72 aa4.16□□□□□ -1.74
CHPF2-201ENST00000035307 SPRR2BP35325 72 aa4.16□□□□□ -1.74
CHPF2-201ENST00000035307 SPRR2AP35326 72 aa4.16□□□□□ -1.74
CHPF2-201ENST00000035307 LCE2DQ5TA82 110 aaPredicted RBP4.14□□□□□ -1.75
CHPF2-201ENST00000035307 KRTAP19-7Q3SYF9 63 aa4.12□□□□□ -1.75
CHPF2-201ENST00000035307 MT1EP04732 61 aa4.12□□□□□ -1.75
CHPF2-201ENST00000035307 LOC100996750A0A140TA64 210 aa4.09□□□□□ -1.75
CHPF2-201ENST00000035307 MT1LQ93083 61 aa4.09□□□□□ -1.76
CHPF2-201ENST00000035307 LCE3BQ5TA77 95 aa4.07□□□□□ -1.76
CHPF2-201ENST00000035307 KRTAP9-6A0A140TA67 174 aa4.03□□□□□ -1.76
CHPF2-201ENST00000035307 KRTAP19-3Q7Z4W3 81 aa4.01□□□□□ -1.77
CHPF2-201ENST00000035307 MDN1Q9NU22 5596 aa4.01□□□□□ -1.77
CHPF2-201ENST00000035307 SPRR2DP22532 72 aa3.97□□□□□ -1.77
CHPF2-201ENST00000035307 MT1MQ8N339 61 aa3.94□□□□□ -1.78
CHPF2-201ENST00000035307 KRTAP9-6A8MVA2 160 aa3.91□□□□□ -1.78
CHPF2-201ENST00000035307 KRTAP12-4P60329 112 aa3.91□□□□□ -1.78
CHPF2-201ENST00000035307 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.85□□□□□ -1.79
CHPF2-201ENST00000035307 KRTAP9-7A8MTY7 169 aa3.78□□□□□ -1.8
CHPF2-201ENST00000035307 KRTAP2-3P0C7H8 128 aa3.78□□□□□ -1.8
CHPF2-201ENST00000035307 KRTAP2-4Q9BYR9 128 aa3.78□□□□□ -1.8
CHPF2-201ENST00000035307 KRTAP2-1Q9BYU5 128 aa3.78□□□□□ -1.8
CHPF2-201ENST00000035307 KRTAP4-9Q9BYQ8 210 aa3.77□□□□□ -1.81
CHPF2-201ENST00000035307 LCE1AQ5T7P2 110 aa3.75□□□□□ -1.81
CHPF2-201ENST00000035307 KRTAP19-4Q3LI73 84 aa3.73□□□□□ -1.81
CHPF2-201ENST00000035307 MT4P47944 62 aa3.71□□□□□ -1.81
CHPF2-201ENST00000035307 LCE5AQ5TCM9 118 aa3.7□□□□□ -1.82
CHPF2-201ENST00000035307 LCE3DQ9BYE3 92 aa3.66□□□□□ -1.82
CHPF2-201ENST00000035307 KRTAP6-3Q3LI67 103 aa3.61□□□□□ -1.83
CHPF2-201ENST00000035307 LCE3EQ5T5B0 92 aa3.56□□□□□ -1.84
CHPF2-201ENST00000035307 KRTAP6-1Q3LI64 71 aa3.56□□□□□ -1.84
CHPF2-201ENST00000035307 NEBP20929 6669 aa3.49□□□□□ -1.85
CHPF2-201ENST00000035307 KRTAP5-9P26371 169 aa3.48□□□□□ -1.85
CHPF2-201ENST00000035307 PRM1P04553 51 aa3.43□□□□□ -1.86
CHPF2-201ENST00000035307 MT1AP04731 61 aa3.43□□□□□ -1.86
CHPF2-201ENST00000035307 KRTAP20-1Q3LI63 56 aa3.37□□□□□ -1.87
CHPF2-201ENST00000035307 KRTAP6-2Q3LI66 62 aa3.37□□□□□ -1.87
CHPF2-201ENST00000035307 MT3P25713 68 aa3.34□□□□□ -1.87
CHPF2-201ENST00000035307 KRTAP4-6Q9BYQ5 205 aa3.31□□□□□ -1.88
CHPF2-201ENST00000035307 LCE1DQ5T752 114 aa3.26□□□□□ -1.89
CHPF2-201ENST00000035307 KRTAP2-2Q9BYT5 123 aa3.25□□□□□ -1.89
CHPF2-201ENST00000035307 LCE1BQ5T7P3 118 aa3.24□□□□□ -1.89
CHPF2-201ENST00000035307 KRTAP9-4Q9BYQ2 154 aa3.22□□□□□ -1.89
CHPF2-201ENST00000035307 MUC19Q7Z5P9 8384 aa3.18□□□□□ -1.9
CHPF2-201ENST00000035307 KRTAP5-5Q701N2 237 aaPredicted RBP3.1□□□□□ -1.91
CHPF2-201ENST00000035307 HMCN1Q96RW7 5635 aa3.07□□□□□ -1.92
CHPF2-201ENST00000035307 LCE4AQ5TA78 99 aa3.07□□□□□ -1.92
CHPF2-201ENST00000035307 KRTAP20-2Q3LI61 65 aa3.02□□□□□ -1.93
CHPF2-201ENST00000035307 MUC5ACP98088 5654 aa3□□□□□ -1.93
CHPF2-201ENST00000035307 GPR98Q8WXG9 6306 aa2.96□□□□□ -1.94
CHPF2-201ENST00000035307 KRTAP5-4Q6L8H1 288 aa2.81□□□□□ -1.96
CHPF2-201ENST00000035307 AHNAK2Q8IVF2 5795 aa2.7□□□□□ -1.98
CHPF2-201ENST00000035307 KRTAP4-11Q9BYQ6 195 aa2.68□□□□□ -1.98
CHPF2-201ENST00000035307 LCE1EQ5T753 118 aa2.66□□□□□ -1.98
CHPF2-201ENST00000035307 KRTAP5-3Q6L8H2 238 aa2.61□□□□□ -1.99
CHPF2-201ENST00000035307 KRTAP4-12Q9BQ66 201 aa2.6□□□□□ -1.99
CHPF2-201ENST00000035307 KRTAP4-2Q9BYR5 136 aa2.6□□□□□ -1.99
CHPF2-201ENST00000035307 KRTAP4-4Q9BYR3 166 aa2.57□□□□□ -2
CHPF2-201ENST00000035307 MUC5BQ9HC84 5762 aaPredicted RBP2.57□□□□□ -2
CHPF2-201ENST00000035307 KRTAP5-2Q701N4 177 aa2.51□□□□□ -2.01
CHPF2-201ENST00000035307 LCE1CQ5T751 118 aa2.5□□□□□ -2.01
CHPF2-201ENST00000035307 LCE1FQ5T754 118 aa2.5□□□□□ -2.01
CHPF2-201ENST00000035307 KRTAP9-9Q9BYP9 154 aa2.5□□□□□ -2.01
CHPF2-201ENST00000035307 KRTAP5-8O75690 187 aa2.46□□□□□ -2.02
CHPF2-201ENST00000035307 KRTAP5-10Q6L8G5 202 aa2.39□□□□□ -2.03
CHPF2-201ENST00000035307 KRTAP5-1Q6L8H4 278 aa2.32□□□□□ -2.04
CHPF2-201ENST00000035307 KRTAP5-7Q6L8G8 165 aa2.27□□□□□ -2.05
CHPF2-201ENST00000035307 AHNAKQ09666 5890 aaKnown RBP2.21□□□□□ -2.06
CHPF2-201ENST00000035307 KRTAP21-2Q3LI59 83 aa2.06□□□□□ -2.08
CHPF2-201ENST00000035307 KRTAP21-1Q3LI58 79 aa1.94□□□□□ -2.1
CHPF2-201ENST00000035307 KRTAP5-11Q6L8G4 156 aa1.94□□□□□ -2.1
CHPF2-201ENST00000035307 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.84□□□□□ -2.11
CHPF2-201ENST00000035307 PHGR1C9JFL3 82 aa1.73□□□□□ -2.13
CHPF2-201ENST00000035307 MUC16Q8WXI7 14507 aa1.17□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 12.6 ms