RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 XP32Q5T750 250 aa1.46□□□□□ -2.18
SCN1A-219ENST00000641575 HUWE1Q7Z6Z7 4374 aaKnown RBP1.46□□□□□ -2.18
SCN1A-219ENST00000641575 DNAH2Q9P225 4427 aa1.46□□□□□ -2.18
SCN1A-219ENST00000641575 DNAH10Q8IVF4 4471 aa1.45□□□□□ -2.18
SCN1A-219ENST00000641575 PKHD1L1Q86WI1 4243 aa1.44□□□□□ -2.18
SCN1A-219ENST00000641575 KRTAP1-5Q9BYS1 174 aa1.44□□□□□ -2.18
SCN1A-219ENST00000641575 PLECQ15149 4684 aaKnown RBP1.43□□□□□ -2.18
SCN1A-219ENST00000641575 DNAH9Q9NYC9 4486 aa1.43□□□□□ -2.18
SCN1A-219ENST00000641575 KRTAP10-6P60371 365 aaPredicted RBP1.43□□□□□ -2.18
SCN1A-219ENST00000641575 SACSQ9NZJ4 4579 aa1.43□□□□□ -2.18
SCN1A-219ENST00000641575 KRTAP13-1Q8IUC0 172 aa1.42□□□□□ -2.18
SCN1A-219ENST00000641575 KRTAP12-2P59991 146 aa1.42□□□□□ -2.18
SCN1A-219ENST00000641575 A0A1B0GVY2 172 aa1.42□□□□□ -2.18
SCN1A-219ENST00000641575 KRTAP13-2Q52LG2 175 aa1.4□□□□□ -2.18
SCN1A-219ENST00000641575 DNHD1Q96M86 4753 aa1.4□□□□□ -2.19
SCN1A-219ENST00000641575 KRTAP13-4Q3LI77 160 aa1.39□□□□□ -2.19
SCN1A-219ENST00000641575 KRTAP13-3Q3SY46 172 aa1.39□□□□□ -2.19
SCN1A-219ENST00000641575 DNAH8Q96JB1 4490 aa1.38□□□□□ -2.19
SCN1A-219ENST00000641575 DNAH11Q96DT5 4516 aa1.38□□□□□ -2.19
SCN1A-219ENST00000641575 KRTAP15-1Q3LI76 137 aa1.38□□□□□ -2.19
SCN1A-219ENST00000641575 DYNC1H1Q14204 4646 aaKnown RBP1.38□□□□□ -2.19
SCN1A-219ENST00000641575 KRTAP10-7P60409 375 aaPredicted RBP1.37□□□□□ -2.19
SCN1A-219ENST00000641575 FAT2Q9NYQ8 4349 aa1.37□□□□□ -2.19
SCN1A-219ENST00000641575 DNAH5Q8TE73 4624 aa1.35□□□□□ -2.19
SCN1A-219ENST00000641575 KRTAP7-1Q8IUC3 87 aa1.35□□□□□ -2.19
SCN1A-219ENST00000641575 TNXBP22105 4242 aa1.33□□□□□ -2.2
SCN1A-219ENST00000641575 APOBP04114 4563 aaKnown RBP1.32□□□□□ -2.2
SCN1A-219ENST00000641575 KRTAP1-4P0C5Y4 121 aa1.32□□□□□ -2.2
SCN1A-219ENST00000641575 KRTAP12-1P59990 96 aa1.32□□□□□ -2.2
SCN1A-219ENST00000641575 HSPG2P98160 4391 aa1.32□□□□□ -2.2
SCN1A-219ENST00000641575 KRTAP10-12P60413 245 aa1.31□□□□□ -2.2
SCN1A-219ENST00000641575 KRTAP8-1Q8IUC2 63 aa1.31□□□□□ -2.2
SCN1A-219ENST00000641575 FAT3Q8TDW7 4589 aa1.28□□□□□ -2.21
SCN1A-219ENST00000641575 PKD1P98161 4303 aa1.27□□□□□ -2.21
SCN1A-219ENST00000641575 FAT1Q14517 4588 aa1.26□□□□□ -2.21
SCN1A-219ENST00000641575 CRCT1Q9UGL9 99 aa1.26□□□□□ -2.21
SCN1A-219ENST00000641575 STARD9Q9P2P6 4700 aa1.24□□□□□ -2.21
SCN1A-219ENST00000641575 LRP1BQ9NZR2 4599 aa1.24□□□□□ -2.21
SCN1A-219ENST00000641575 RYR2Q92736 4967 aa1.24□□□□□ -2.21
SCN1A-219ENST00000641575 KRTAP3-3Q9BYR6 98 aa1.23□□□□□ -2.21
SCN1A-219ENST00000641575 KRTAP3-2Q9BYR7 98 aa1.23□□□□□ -2.21
SCN1A-219ENST00000641575 HYDINQ4G0P3 5121 aa1.22□□□□□ -2.21
SCN1A-219ENST00000641575 KRTAP12-4P60329 112 aa1.22□□□□□ -2.21
SCN1A-219ENST00000641575 LORP23490 312 aaPredicted RBP1.22□□□□□ -2.21
SCN1A-219ENST00000641575 BIRC6Q9NR09 4857 aa1.22□□□□□ -2.21
SCN1A-219ENST00000641575 RYR3Q15413 4870 aa1.21□□□□□ -2.22
SCN1A-219ENST00000641575 KRTAP12-3P60328 96 aa1.21□□□□□ -2.22
SCN1A-219ENST00000641575 LCE2DQ5TA82 110 aaPredicted RBP1.21□□□□□ -2.22
SCN1A-219ENST00000641575 KRTAP10-5P60370 271 aa1.2□□□□□ -2.22
SCN1A-219ENST00000641575 MYCBP2O75592 4640 aa1.19□□□□□ -2.22
SCN1A-219ENST00000641575 KRTAP3-1Q9BYR8 98 aa1.18□□□□□ -2.22
SCN1A-219ENST00000641575 SPRR2FQ96RM1 72 aa1.18□□□□□ -2.22
SCN1A-219ENST00000641575 KMT2CQ8NEZ4 4911 aaKnown RBP1.17□□□□□ -2.22
SCN1A-219ENST00000641575 PCLOQ9Y6V0 5065 aa1.16□□□□□ -2.22
SCN1A-219ENST00000641575 LCE2BO14633 110 aa1.16□□□□□ -2.22
SCN1A-219ENST00000641575 LRP1Q07954 4544 aaKnown RBP1.16□□□□□ -2.22
SCN1A-219ENST00000641575 MT1HL1P0DM35 61 aa1.15□□□□□ -2.22
SCN1A-219ENST00000641575 SPRR2EP22531 72 aa1.15□□□□□ -2.22
SCN1A-219ENST00000641575 SPRR2BP35325 72 aa1.15□□□□□ -2.22
SCN1A-219ENST00000641575 SPRR2AP35326 72 aa1.15□□□□□ -2.22
SCN1A-219ENST00000641575 SPRR5A0A1B0GTR4 108 aa1.15□□□□□ -2.23
SCN1A-219ENST00000641575 SPRR2DP22532 72 aa1.14□□□□□ -2.23
SCN1A-219ENST00000641575 MUC17Q685J3 4493 aa1.14□□□□□ -2.23
SCN1A-219ENST00000641575 LCE3AQ5TA76 89 aa1.13□□□□□ -2.23
SCN1A-219ENST00000641575 HERC2O95714 4834 aa1.13□□□□□ -2.23
SCN1A-219ENST00000641575 MUC5BQ9HC84 5762 aaPredicted RBP1.13□□□□□ -2.23
SCN1A-219ENST00000641575 HERC1Q15751 4861 aa1.1□□□□□ -2.23
SCN1A-219ENST00000641575 LCE2AQ5TA79 106 aaPredicted RBP1.1□□□□□ -2.23
SCN1A-219ENST00000641575 LCE2CQ5TA81 110 aa1.1□□□□□ -2.23
SCN1A-219ENST00000641575 KRTAP10-4P60372 401 aaPredicted RBP1.1□□□□□ -2.23
SCN1A-219ENST00000641575 KIAA1109Q2LD37 5005 aa1.1□□□□□ -2.23
SCN1A-219ENST00000641575 UBR4Q5T4S7 5183 aa1.09□□□□□ -2.23
SCN1A-219ENST00000641575 EPPK1P58107 5090 aaKnown RBP1.09□□□□□ -2.24
SCN1A-219ENST00000641575 LCE3CQ5T5A8 94 aa1.07□□□□□ -2.24
SCN1A-219ENST00000641575 LOC100996750A0A140TA64 210 aa1.07□□□□□ -2.24
SCN1A-219ENST00000641575 KRTAP4-6Q9BYQ5 205 aa1.07□□□□□ -2.24
SCN1A-219ENST00000641575 SPRR2GQ9BYE4 73 aa1.05□□□□□ -2.24
SCN1A-219ENST00000641575 HMCN2Q8NDA2 5059 aa1.05□□□□□ -2.24
SCN1A-219ENST00000641575 MT1HP80294 61 aa1.05□□□□□ -2.24
SCN1A-219ENST00000641575 LRP2P98164 4655 aa1.05□□□□□ -2.24
SCN1A-219ENST00000641575 MT1GP13640 62 aa1.04□□□□□ -2.24
SCN1A-219ENST00000641575 AHNAK2Q8IVF2 5795 aa1.04□□□□□ -2.24
SCN1A-219ENST00000641575 ABCA13Q86UQ4 5058 aa1.04□□□□□ -2.24
SCN1A-219ENST00000641575 LCE3BQ5TA77 95 aa1.02□□□□□ -2.25
SCN1A-219ENST00000641575 KRTAP19-5Q3LI72 72 aa1.02□□□□□ -2.25
SCN1A-219ENST00000641575 LCE3DQ9BYE3 92 aa1□□□□□ -2.25
SCN1A-219ENST00000641575 KRTAP9-6A0A140TA67 174 aa1□□□□□ -2.25
SCN1A-219ENST00000641575 FAT4Q6V0I7 4981 aa1□□□□□ -2.25
SCN1A-219ENST00000641575 KRTAP4-5Q9BYR2 181 aa0.99□□□□□ -2.25
SCN1A-219ENST00000641575 RNF213Q63HN8 5207 aa0.99□□□□□ -2.25
SCN1A-219ENST00000641575 KRTAP20-1Q3LI63 56 aa0.99□□□□□ -2.25
SCN1A-219ENST00000641575 MT1FP04733 61 aa0.98□□□□□ -2.25
SCN1A-219ENST00000641575 LCE3EQ5T5B0 92 aa0.98□□□□□ -2.25
SCN1A-219ENST00000641575 KRTAP5-2Q701N4 177 aa0.98□□□□□ -2.25
SCN1A-219ENST00000641575 KRTAP9-2Q9BYQ4 174 aa0.97□□□□□ -2.25
SCN1A-219ENST00000641575 LPAP08519 4548 aa0.97□□□□□ -2.25
SCN1A-219ENST00000641575 DSTQ03001 7570 aaKnown RBP0.97□□□□□ -2.25
SCN1A-219ENST00000641575 MT2AP02795 61 aa0.96□□□□□ -2.26
SCN1A-219ENST00000641575 SSPOA2VEC9 5147 aa0.96□□□□□ -2.26
SCN1A-219ENST00000641575 KRTAP2-3P0C7H8 128 aa0.96□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms