RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 KRTAP10-8P60410 259 aa10.4□□□□□ -0.75
SYNGAP1-227ENST00000638142 RPL37P61927 97 aaKnown RBP10.39□□□□□ -0.75
SYNGAP1-227ENST00000638142 KRTAP3-3Q9BYR6 98 aa10.35□□□□□ -0.75
SYNGAP1-227ENST00000638142 TNXBP22105 4242 aa10.34□□□□□ -0.75
SYNGAP1-227ENST00000638142 KRTAP10-6P60371 365 aaPredicted RBP10.32□□□□□ -0.76
SYNGAP1-227ENST00000638142 BIRC6Q9NR09 4857 aa10.31□□□□□ -0.76
SYNGAP1-227ENST00000638142 ROMO1P60602 79 aa10.31□□□□□ -0.76
SYNGAP1-227ENST00000638142 H3BS24 57 aa10.3□□□□□ -0.76
SYNGAP1-227ENST00000638142 XP32Q5T750 250 aa10.29□□□□□ -0.76
SYNGAP1-227ENST00000638142 LRP1Q07954 4544 aaKnown RBP10.26□□□□□ -0.77
SYNGAP1-227ENST00000638142 S4R3F8 94 aa10.26□□□□□ -0.77
SYNGAP1-227ENST00000638142 Q5VSD8 79 aa10.25□□□□□ -0.77
SYNGAP1-227ENST00000638142 KRTAP3-2Q9BYR7 98 aa10.24□□□□□ -0.77
SYNGAP1-227ENST00000638142 CRIPTQ9P021 101 aa10.23□□□□□ -0.77
SYNGAP1-227ENST00000638142 DMBT1Q9UGM3 2413 aaPredicted RBP10.22□□□□□ -0.77
SYNGAP1-227ENST00000638142 KIAA1109Q2LD37 5005 aa10.22□□□□□ -0.77
SYNGAP1-227ENST00000638142 HSPG2P98160 4391 aa10.21□□□□□ -0.78
SYNGAP1-227ENST00000638142 KRTAP13-4Q3LI77 160 aa10.21□□□□□ -0.78
SYNGAP1-227ENST00000638142 A0A0D9SG42 100 aa10.13□□□□□ -0.79
SYNGAP1-227ENST00000638142 P0C880 135 aa10.08□□□□□ -0.8
SYNGAP1-227ENST00000638142 MYCBP2O75592 4640 aa10.04□□□□□ -0.8
SYNGAP1-227ENST00000638142 HERC2O95714 4834 aa10.01□□□□□ -0.81
SYNGAP1-227ENST00000638142 TPRXLQ17RH7 258 aa10.01□□□□□ -0.81
SYNGAP1-227ENST00000638142 MT1HL1P0DM35 61 aa10□□□□□ -0.81
SYNGAP1-227ENST00000638142 RYR1P21817 5038 aa10□□□□□ -0.81
SYNGAP1-227ENST00000638142 PCLOQ9Y6V0 5065 aa9.96□□□□□ -0.81
SYNGAP1-227ENST00000638142 KRTAP17-1Q9BYP8 105 aa9.95□□□□□ -0.82
SYNGAP1-227ENST00000638142 KRTAP12-2P59991 146 aa9.9□□□□□ -0.83
SYNGAP1-227ENST00000638142 ABCA13Q86UQ4 5058 aa9.87□□□□□ -0.83
SYNGAP1-227ENST00000638142 KRTAP4-5Q9BYR2 181 aa9.86□□□□□ -0.83
SYNGAP1-227ENST00000638142 C10orf95Q9H7T3 257 aa9.86□□□□□ -0.83
SYNGAP1-227ENST00000638142 SPINT4Q6UDR6 99 aa9.85□□□□□ -0.83
SYNGAP1-227ENST00000638142 KRTAP12-1P59990 96 aa9.84□□□□□ -0.83
SYNGAP1-227ENST00000638142 M0QZ58 72 aa9.83□□□□□ -0.84
SYNGAP1-227ENST00000638142 LPAP08519 4548 aa9.76□□□□□ -0.85
SYNGAP1-227ENST00000638142 LRP2P98164 4655 aa9.73□□□□□ -0.85
SYNGAP1-227ENST00000638142 KRTAP15-1Q3LI76 137 aa9.71□□□□□ -0.86
SYNGAP1-227ENST00000638142 R4GN34 69 aa9.53□□□□□ -0.88
SYNGAP1-227ENST00000638142 NDUFAF8A1L188 74 aa9.51□□□□□ -0.89
SYNGAP1-227ENST00000638142 SEC61BP60468 96 aaKnown RBP9.5□□□□□ -0.89
SYNGAP1-227ENST00000638142 HERC1Q15751 4861 aa9.5□□□□□ -0.89
SYNGAP1-227ENST00000638142 MUC17Q685J3 4493 aa9.36□□□□□ -0.91
SYNGAP1-227ENST00000638142 LORP23490 312 aaPredicted RBP9.32□□□□□ -0.92
SYNGAP1-227ENST00000638142 J3QL48 77 aa9.32□□□□□ -0.92
SYNGAP1-227ENST00000638142 KRTAP4-1Q9BYQ7 146 aa9.31□□□□□ -0.92
SYNGAP1-227ENST00000638142 KRTAP19-2Q3LHN2 52 aa9.21□□□□□ -0.93
SYNGAP1-227ENST00000638142 PLAC4Q8WY50 150 aa9.14□□□□□ -0.95
SYNGAP1-227ENST00000638142 HMCN2Q8NDA2 5059 aa9.08□□□□□ -0.96
SYNGAP1-227ENST00000638142 CAMK2N1Q7Z7J9 78 aa9.05□□□□□ -0.96
SYNGAP1-227ENST00000638142 PP632Q6XCG6 107 aa9.04□□□□□ -0.96
SYNGAP1-227ENST00000638142 UBR4Q5T4S7 5183 aa9□□□□□ -0.97
SYNGAP1-227ENST00000638142 FLGP20930 4061 aaPredicted RBP8.93□□□□□ -0.98
SYNGAP1-227ENST00000638142 RNF213Q63HN8 5207 aa8.83□□□□□ -1
SYNGAP1-227ENST00000638142 LUZP6Q538Z0 58 aa8.78□□□□□ -1
SYNGAP1-227ENST00000638142 MUC2Q02817 5179 aa8.77□□□□□ -1.01
SYNGAP1-227ENST00000638142 TNP1P09430 55 aa8.76□□□□□ -1.01
SYNGAP1-227ENST00000638142 KRTAP23-1A1A580 65 aa8.73□□□□□ -1.01
SYNGAP1-227ENST00000638142 LCE2CQ5TA81 110 aa8.59□□□□□ -1.03
SYNGAP1-227ENST00000638142 SPRR2GQ9BYE4 73 aa8.57□□□□□ -1.04
SYNGAP1-227ENST00000638142 A0A0A0MQY5 61 aa8.53□□□□□ -1.04
SYNGAP1-227ENST00000638142 SPRR5A0A1B0GTR4 108 aa8.53□□□□□ -1.04
SYNGAP1-227ENST00000638142 KRTAP19-1Q8IUB9 90 aa8.48□□□□□ -1.05
SYNGAP1-227ENST00000638142 M0R2T5 61 aa8.39□□□□□ -1.07
SYNGAP1-227ENST00000638142 FAT4Q6V0I7 4981 aa8.36□□□□□ -1.07
SYNGAP1-227ENST00000638142 MT1HP80294 61 aa8.35□□□□□ -1.07
SYNGAP1-227ENST00000638142 MT2AP02795 61 aa8.26□□□□□ -1.09
SYNGAP1-227ENST00000638142 MT1FP04733 61 aa8.25□□□□□ -1.09
SYNGAP1-227ENST00000638142 KRTAP10-10P60014 251 aa8.25□□□□□ -1.09
SYNGAP1-227ENST00000638142 LCE3AQ5TA76 89 aa8.24□□□□□ -1.09
SYNGAP1-227ENST00000638142 KRTAP9-8Q9BYQ0 159 aa8.18□□□□□ -1.1
SYNGAP1-227ENST00000638142 KRTAP19-8Q3LI54 63 aa8.17□□□□□ -1.1
SYNGAP1-227ENST00000638142 KRTAP8-1Q8IUC2 63 aa8.09□□□□□ -1.11
SYNGAP1-227ENST00000638142 MT1BP07438 61 aa8.03□□□□□ -1.12
SYNGAP1-227ENST00000638142 KRTAP10-5P60370 271 aa8.02□□□□□ -1.13
SYNGAP1-227ENST00000638142 LCE2AQ5TA79 106 aaPredicted RBP8□□□□□ -1.13
SYNGAP1-227ENST00000638142 MT1XP80297 61 aa8□□□□□ -1.13
SYNGAP1-227ENST00000638142 KRTAP10-12P60413 245 aa7.9□□□□□ -1.14
SYNGAP1-227ENST00000638142 KRTAP12-3P60328 96 aa7.87□□□□□ -1.15
SYNGAP1-227ENST00000638142 KRTAP9-3Q9BYQ3 159 aa7.84□□□□□ -1.16
SYNGAP1-227ENST00000638142 KRTAP10-7P60409 375 aaPredicted RBP7.76□□□□□ -1.17
SYNGAP1-227ENST00000638142 PRO2289Q9P1D8 64 aa7.76□□□□□ -1.17
SYNGAP1-227ENST00000638142 INE1O15225 51 aa7.72□□□□□ -1.17
SYNGAP1-227ENST00000638142 FSIP2Q5CZC0 6907 aa7.68□□□□□ -1.18
SYNGAP1-227ENST00000638142 KRTAP9-2Q9BYQ4 174 aa7.68□□□□□ -1.18
SYNGAP1-227ENST00000638142 LCE2BO14633 110 aa7.47□□□□□ -1.21
SYNGAP1-227ENST00000638142 KRTAP19-5Q3LI72 72 aa7.47□□□□□ -1.21
SYNGAP1-227ENST00000638142 LCE2DQ5TA82 110 aaPredicted RBP7.45□□□□□ -1.22
SYNGAP1-227ENST00000638142 LCE3CQ5T5A8 94 aa7.41□□□□□ -1.22
SYNGAP1-227ENST00000638142 KRTAP9-6A0A140TA67 174 aa7.33□□□□□ -1.24
SYNGAP1-227ENST00000638142 USH2AO75445 5202 aa7.31□□□□□ -1.24
SYNGAP1-227ENST00000638142 CRCT1Q9UGL9 99 aa7.26□□□□□ -1.25
SYNGAP1-227ENST00000638142 KRTAP4-8A0A0G2JLE6 195 aa7.22□□□□□ -1.25
SYNGAP1-227ENST00000638142 KRTAP4-8Q9BYQ9 185 aa7.22□□□□□ -1.25
SYNGAP1-227ENST00000638142 SSPOA2VEC9 5147 aa7.16□□□□□ -1.26
SYNGAP1-227ENST00000638142 KMT2DO14686 5537 aa7.15□□□□□ -1.26
SYNGAP1-227ENST00000638142 KRTAP19-7Q3SYF9 63 aa7.13□□□□□ -1.27
SYNGAP1-227ENST00000638142 KRTAP9-6A8MVA2 160 aa7.11□□□□□ -1.27
SYNGAP1-227ENST00000638142 KRTAP19-4Q3LI73 84 aa7.09□□□□□ -1.27
SYNGAP1-227ENST00000638142 KRTAP2-3P0C7H8 128 aa6.98□□□□□ -1.29
SYNGAP1-227ENST00000638142 KRTAP2-4Q9BYR9 128 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms