RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 SPRR2FQ96RM1 72 aa6.98□□□□□ -1.29
CLN3-255ENST00000637100 KRTAP2-2Q9BYT5 123 aa6.98□□□□□ -1.29
CLN3-255ENST00000637100 KRTAP2-1Q9BYU5 128 aa6.98□□□□□ -1.29
CLN3-255ENST00000637100 H0YAA0 97 aa6.97□□□□□ -1.29
CLN3-255ENST00000637100 SPRR2EP22531 72 aa6.96□□□□□ -1.3
CLN3-255ENST00000637100 SPRR2BP35325 72 aa6.96□□□□□ -1.3
CLN3-255ENST00000637100 SPRR2AP35326 72 aa6.96□□□□□ -1.3
CLN3-255ENST00000637100 UBL5Q9BZL1 73 aa6.96□□□□□ -1.3
CLN3-255ENST00000637100 CYP4F30PQ9H0H9 118 aa6.95□□□□□ -1.3
CLN3-255ENST00000637100 MT1XP80297 61 aa6.93□□□□□ -1.3
CLN3-255ENST00000637100 A0A1B0GV90 55 aa6.92□□□□□ -1.3
CLN3-255ENST00000637100 LCE1AQ5T7P2 110 aa6.92□□□□□ -1.3
CLN3-255ENST00000637100 COL5A1-AS1Q5SY13 56 aa6.91□□□□□ -1.3
CLN3-255ENST00000637100 PRO2289Q9P1D8 64 aa6.89□□□□□ -1.31
CLN3-255ENST00000637100 PRO0461Q9UI25 63 aa6.89□□□□□ -1.31
CLN3-255ENST00000637100 K7EP34 96 aa6.88□□□□□ -1.31
CLN3-255ENST00000637100 KRTAP12-2P59991 146 aa6.88□□□□□ -1.31
CLN3-255ENST00000637100 KRTAP8-1Q8IUC2 63 aa6.85□□□□□ -1.31
CLN3-255ENST00000637100 LOC101927531A0A1B0GV80 90 aa6.82□□□□□ -1.32
CLN3-255ENST00000637100 GPR98Q8WXG9 6306 aa6.82□□□□□ -1.32
CLN3-255ENST00000637100 A8MUN3 132 aa6.8□□□□□ -1.32
CLN3-255ENST00000637100 NDUFC1O43677 76 aa6.8□□□□□ -1.32
CLN3-255ENST00000637100 TRAV22A0A0B4J277 110 aa6.78□□□□□ -1.32
CLN3-255ENST00000637100 GTF2H5Q6ZYL4 71 aa6.77□□□□□ -1.33
CLN3-255ENST00000637100 ADM2Q7Z4H4 148 aa6.75□□□□□ -1.33
CLN3-255ENST00000637100 SPRR2DP22532 72 aa6.74□□□□□ -1.33
CLN3-255ENST00000637100 ETDBQ3ZM63 59 aa6.74□□□□□ -1.33
CLN3-255ENST00000637100 F8W1H4 67 aa6.73□□□□□ -1.33
CLN3-255ENST00000637100 PLAC4Q8WY50 150 aa6.73□□□□□ -1.33
CLN3-255ENST00000637100 KRTAP4-8A0A0G2JLE6 195 aa6.72□□□□□ -1.33
CLN3-255ENST00000637100 KRTAP4-8Q9BYQ9 185 aa6.72□□□□□ -1.33
CLN3-255ENST00000637100 SCGB1A1P11684 91 aa6.67□□□□□ -1.34
CLN3-255ENST00000637100 ACYP1P07311 99 aa6.66□□□□□ -1.34
CLN3-255ENST00000637100 ATOX1O00244 68 aa6.64□□□□□ -1.35
CLN3-255ENST00000637100 UQCRQO14949 82 aa6.64□□□□□ -1.35
CLN3-255ENST00000637100 K7ERU9 68 aa6.63□□□□□ -1.35
CLN3-255ENST00000637100 KRTAP10-12P60413 245 aa6.61□□□□□ -1.35
CLN3-255ENST00000637100 LCE3BQ5TA77 95 aa6.61□□□□□ -1.35
CLN3-255ENST00000637100 R4GN34 69 aa6.61□□□□□ -1.35
CLN3-255ENST00000637100 H0Y9P7 68 aa6.6□□□□□ -1.35
CLN3-255ENST00000637100 P0C880 135 aa6.6□□□□□ -1.35
CLN3-255ENST00000637100 KRTAP10-7P60409 375 aaPredicted RBP6.57□□□□□ -1.36
CLN3-255ENST00000637100 C20orf197Q8N268 126 aa6.55□□□□□ -1.36
CLN3-255ENST00000637100 HIST1H4AP62805 103 aaKnown RBP6.54□□□□□ -1.36
CLN3-255ENST00000637100 KRTAP3-2Q9BYR7 98 aa6.54□□□□□ -1.36
CLN3-255ENST00000637100 M0QZ58 72 aa6.53□□□□□ -1.36
CLN3-255ENST00000637100 ATP5EP2Q5VTU8 51 aa6.51□□□□□ -1.37
CLN3-255ENST00000637100 FAM240AA0A1B0GVK7 77 aa6.5□□□□□ -1.37
CLN3-255ENST00000637100 DSTQ03001 7570 aaKnown RBP6.48□□□□□ -1.37
CLN3-255ENST00000637100 LINC00208Q96KT6 92 aa6.47□□□□□ -1.37
CLN3-255ENST00000637100 J3QR89 54 aa6.4□□□□□ -1.38
CLN3-255ENST00000637100 LINC00643Q86TS7 51 aa6.4□□□□□ -1.38
CLN3-255ENST00000637100 OCR1Q9BZK8 76 aa6.4□□□□□ -1.38
CLN3-255ENST00000637100 LINC01554Q52M75 96 aa6.39□□□□□ -1.39
CLN3-255ENST00000637100 DMAC1Q96GE9 116 aa6.38□□□□□ -1.39
CLN3-255ENST00000637100 MP68P56378 58 aa6.36□□□□□ -1.39
CLN3-255ENST00000637100 KRTAP4-9Q9BYQ8 210 aa6.36□□□□□ -1.39
CLN3-255ENST00000637100 H3BPC8 53 aa6.3□□□□□ -1.4
CLN3-255ENST00000637100 LCE5AQ5TCM9 118 aa6.29□□□□□ -1.4
CLN3-255ENST00000637100 TRAV7A0A075B6U4 112 aa6.24□□□□□ -1.41
CLN3-255ENST00000637100 KRTAP19-7Q3SYF9 63 aa6.22□□□□□ -1.41
CLN3-255ENST00000637100 MT-ATP8P03928 68 aa6.2□□□□□ -1.42
CLN3-255ENST00000637100 KRTAP19-3Q7Z4W3 81 aa6.18□□□□□ -1.42
CLN3-255ENST00000637100 HMCN1Q96RW7 5635 aa6.16□□□□□ -1.42
CLN3-255ENST00000637100 MT1EP04732 61 aa6.16□□□□□ -1.42
CLN3-255ENST00000637100 ANAPC13Q9BS18 74 aa6.14□□□□□ -1.43
CLN3-255ENST00000637100 AHNAK2Q8IVF2 5795 aa6.14□□□□□ -1.43
CLN3-255ENST00000637100 LCE1DQ5T752 114 aa6.12□□□□□ -1.43
CLN3-255ENST00000637100 ACYP2P14621 99 aa6.11□□□□□ -1.43
CLN3-255ENST00000637100 SPTSSBQ8NFR3 76 aa6.08□□□□□ -1.44
CLN3-255ENST00000637100 SMIM20Q8N5G0 67 aa6.07□□□□□ -1.44
CLN3-255ENST00000637100 RPS28P62857 69 aaKnown RBP6.06□□□□□ -1.44
CLN3-255ENST00000637100 KRTAP13-4Q3LI77 160 aa6.03□□□□□ -1.44
CLN3-255ENST00000637100 KRTAP5-10Q6L8G5 202 aa6.03□□□□□ -1.44
CLN3-255ENST00000637100 MT1GP13640 62 aa6.01□□□□□ -1.45
CLN3-255ENST00000637100 LCE4AQ5TA78 99 aa6.01□□□□□ -1.45
CLN3-255ENST00000637100 CYSTM1Q9H1C7 97 aa6.01□□□□□ -1.45
CLN3-255ENST00000637100 CAMK2N1Q7Z7J9 78 aa5.98□□□□□ -1.45
CLN3-255ENST00000637100 MT4P47944 62 aa5.94□□□□□ -1.46
CLN3-255ENST00000637100 CHKB-CPT1BH3BT56 60 aa5.92□□□□□ -1.46
CLN3-255ENST00000637100 CCDC179H3BU77 68 aa5.92□□□□□ -1.46
CLN3-255ENST00000637100 SNURFQ9Y675 71 aa5.91□□□□□ -1.46
CLN3-255ENST00000637100 KRTAP19-5Q3LI72 72 aa5.9□□□□□ -1.46
CLN3-255ENST00000637100 KRTAP5-4Q6L8H1 288 aa5.9□□□□□ -1.46
CLN3-255ENST00000637100 PP632Q6XCG6 107 aa5.9□□□□□ -1.46
CLN3-255ENST00000637100 MT1MQ8N339 61 aa5.88□□□□□ -1.47
CLN3-255ENST00000637100 A0A0D9SG42 100 aa5.87□□□□□ -1.47
CLN3-255ENST00000637100 TMEM258P61165 79 aa5.87□□□□□ -1.47
CLN3-255ENST00000637100 KRTAP5-7Q6L8G8 165 aa5.87□□□□□ -1.47
CLN3-255ENST00000637100 PRO0628Q9UI54 55 aa5.84□□□□□ -1.47
CLN3-255ENST00000637100 MT1LQ93083 61 aa5.82□□□□□ -1.48
CLN3-255ENST00000637100 COX7CP15954 63 aa5.8□□□□□ -1.48
CLN3-255ENST00000637100 SPANXA2-OT1Q8N9U9 137 aa5.79□□□□□ -1.48
CLN3-255ENST00000637100 KRTAP4-6Q9BYQ5 205 aa5.77□□□□□ -1.49
CLN3-255ENST00000637100 SERP2Q8N6R1 65 aa5.75□□□□□ -1.49
CLN3-255ENST00000637100 SEC61GP60059 68 aa5.74□□□□□ -1.49
CLN3-255ENST00000637100 KRTAP5-3Q6L8H2 238 aa5.73□□□□□ -1.49
CLN3-255ENST00000637100 KRTAP4-3Q9BYR4 195 aa5.72□□□□□ -1.49
CLN3-255ENST00000637100 V9GYY9 64 aa5.72□□□□□ -1.49
CLN3-255ENST00000637100 KRTAP12-1P59990 96 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms