RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 Q5VSD8 79 aa6.46□□□□□ -1.38
CLN6-217ENST00000636964 KRTAP17-1Q9BYP8 105 aa6.45□□□□□ -1.38
CLN6-217ENST00000636964 HSPG2P98160 4391 aa6.45□□□□□ -1.38
CLN6-217ENST00000636964 KIAA1109Q2LD37 5005 aa6.41□□□□□ -1.38
CLN6-217ENST00000636964 LRP1Q07954 4544 aaKnown RBP6.41□□□□□ -1.38
CLN6-217ENST00000636964 DMAC1Q96GE9 116 aa6.41□□□□□ -1.38
CLN6-217ENST00000636964 ACYP2P14621 99 aa6.4□□□□□ -1.38
CLN6-217ENST00000636964 EPPK1P58107 5090 aaKnown RBP6.39□□□□□ -1.39
CLN6-217ENST00000636964 PKHD1L1Q86WI1 4243 aa6.39□□□□□ -1.39
CLN6-217ENST00000636964 RYR1P21817 5038 aa6.38□□□□□ -1.39
CLN6-217ENST00000636964 RPS29P62273 56 aaKnown RBP6.37□□□□□ -1.39
CLN6-217ENST00000636964 Q8N1X5 172 aa6.37□□□□□ -1.39
CLN6-217ENST00000636964 C9orf92A6NGG3 77 aa6.35□□□□□ -1.39
CLN6-217ENST00000636964 MYCBP2O75592 4640 aa6.33□□□□□ -1.4
CLN6-217ENST00000636964 KRTAP10-8P60410 259 aa6.32□□□□□ -1.4
CLN6-217ENST00000636964 LCE2CQ5TA81 110 aa6.3□□□□□ -1.4
CLN6-217ENST00000636964 TNXBP22105 4242 aa6.29□□□□□ -1.4
CLN6-217ENST00000636964 IGKV2-30P06310 120 aa6.27□□□□□ -1.41
CLN6-217ENST00000636964 IGKV2D-30A0A075B6S6 120 aa6.26□□□□□ -1.41
CLN6-217ENST00000636964 KRTAP4-5Q9BYR2 181 aa6.24□□□□□ -1.41
CLN6-217ENST00000636964 FAT3Q8TDW7 4589 aa6.24□□□□□ -1.41
CLN6-217ENST00000636964 KRTAP15-1Q3LI76 137 aa6.23□□□□□ -1.41
CLN6-217ENST00000636964 MT1HL1P0DM35 61 aa6.22□□□□□ -1.41
CLN6-217ENST00000636964 H0YAA0 97 aa6.16□□□□□ -1.42
CLN6-217ENST00000636964 LCE2AQ5TA79 106 aaPredicted RBP6.15□□□□□ -1.42
CLN6-217ENST00000636964 XP32Q5T750 250 aa6.07□□□□□ -1.44
CLN6-217ENST00000636964 ABCA13Q86UQ4 5058 aa6.05□□□□□ -1.44
CLN6-217ENST00000636964 RPL37P61927 97 aaKnown RBP6.03□□□□□ -1.44
CLN6-217ENST00000636964 LPAP08519 4548 aa5.99□□□□□ -1.45
CLN6-217ENST00000636964 HERC2O95714 4834 aa5.98□□□□□ -1.45
CLN6-217ENST00000636964 CAMK2N1Q7Z7J9 78 aa5.97□□□□□ -1.45
CLN6-217ENST00000636964 KRTAP3-1Q9BYR8 98 aa5.97□□□□□ -1.45
CLN6-217ENST00000636964 TPRXLQ17RH7 258 aa5.97□□□□□ -1.45
CLN6-217ENST00000636964 BIRC6Q9NR09 4857 aa5.96□□□□□ -1.46
CLN6-217ENST00000636964 LRP2P98164 4655 aa5.96□□□□□ -1.46
CLN6-217ENST00000636964 A0A1B0GU33 70 aa5.95□□□□□ -1.46
CLN6-217ENST00000636964 H1FX-AS1Q4G0G2 97 aa5.94□□□□□ -1.46
CLN6-217ENST00000636964 LORP23490 312 aaPredicted RBP5.94□□□□□ -1.46
CLN6-217ENST00000636964 C10orf95Q9H7T3 257 aa5.92□□□□□ -1.46
CLN6-217ENST00000636964 COX6B2Q6YFQ2 88 aa5.9□□□□□ -1.46
CLN6-217ENST00000636964 A0A0D9SG42 100 aa5.84□□□□□ -1.47
CLN6-217ENST00000636964 MUC2Q02817 5179 aa5.82□□□□□ -1.48
CLN6-217ENST00000636964 PCLOQ9Y6V0 5065 aa5.81□□□□□ -1.48
CLN6-217ENST00000636964 KRTAP13-4Q3LI77 160 aa5.79□□□□□ -1.48
CLN6-217ENST00000636964 HERC1Q15751 4861 aa5.74□□□□□ -1.49
CLN6-217ENST00000636964 KRTAP10-6P60371 365 aaPredicted RBP5.74□□□□□ -1.49
CLN6-217ENST00000636964 S4R3F8 94 aa5.73□□□□□ -1.49
CLN6-217ENST00000636964 KRTAP4-1Q9BYQ7 146 aa5.72□□□□□ -1.49
CLN6-217ENST00000636964 MUC17Q685J3 4493 aa5.65□□□□□ -1.51
CLN6-217ENST00000636964 KRTAP12-2P59991 146 aa5.59□□□□□ -1.51
CLN6-217ENST00000636964 HMCN2Q8NDA2 5059 aa5.59□□□□□ -1.51
CLN6-217ENST00000636964 RNF213Q63HN8 5207 aa5.58□□□□□ -1.52
CLN6-217ENST00000636964 PLAC4Q8WY50 150 aa5.57□□□□□ -1.52
CLN6-217ENST00000636964 PRO2289Q9P1D8 64 aa5.55□□□□□ -1.52
CLN6-217ENST00000636964 R4GN34 69 aa5.55□□□□□ -1.52
CLN6-217ENST00000636964 FAT4Q6V0I7 4981 aa5.52□□□□□ -1.53
CLN6-217ENST00000636964 KRTAP19-2Q3LHN2 52 aa5.52□□□□□ -1.53
CLN6-217ENST00000636964 KRTAP12-1P59990 96 aa5.49□□□□□ -1.53
CLN6-217ENST00000636964 UBR4Q5T4S7 5183 aa5.45□□□□□ -1.54
CLN6-217ENST00000636964 KRTAP23-1A1A580 65 aa5.38□□□□□ -1.55
CLN6-217ENST00000636964 FLGP20930 4061 aaPredicted RBP5.35□□□□□ -1.55
CLN6-217ENST00000636964 M0QZ58 72 aa5.33□□□□□ -1.56
CLN6-217ENST00000636964 M0R2T5 61 aa5.26□□□□□ -1.57
CLN6-217ENST00000636964 MT1HP80294 61 aa5.23□□□□□ -1.57
CLN6-217ENST00000636964 INE1O15225 51 aa5.17□□□□□ -1.58
CLN6-217ENST00000636964 KRTAP10-10P60014 251 aa5.07□□□□□ -1.6
CLN6-217ENST00000636964 MT2AP02795 61 aa5.06□□□□□ -1.6
CLN6-217ENST00000636964 MT1FP04733 61 aa5.06□□□□□ -1.6
CLN6-217ENST00000636964 KRTAP9-8Q9BYQ0 159 aa5.06□□□□□ -1.6
CLN6-217ENST00000636964 KRTAP19-1Q8IUB9 90 aa5.01□□□□□ -1.61
CLN6-217ENST00000636964 FSIP2Q5CZC0 6907 aa5.01□□□□□ -1.61
CLN6-217ENST00000636964 SPRR2GQ9BYE4 73 aa4.98□□□□□ -1.61
CLN6-217ENST00000636964 USH2AO75445 5202 aa4.95□□□□□ -1.62
CLN6-217ENST00000636964 PP632Q6XCG6 107 aa4.9□□□□□ -1.62
CLN6-217ENST00000636964 SPRR5A0A1B0GTR4 108 aa4.87□□□□□ -1.63
CLN6-217ENST00000636964 KRTAP9-3Q9BYQ3 159 aa4.85□□□□□ -1.63
CLN6-217ENST00000636964 KRTAP19-8Q3LI54 63 aa4.81□□□□□ -1.64
CLN6-217ENST00000636964 MT1BP07438 61 aa4.8□□□□□ -1.64
CLN6-217ENST00000636964 TNP1P09430 55 aa4.74□□□□□ -1.65
CLN6-217ENST00000636964 KMT2DO14686 5537 aa4.7□□□□□ -1.66
CLN6-217ENST00000636964 KRTAP10-5P60370 271 aa4.69□□□□□ -1.66
CLN6-217ENST00000636964 MT1XP80297 61 aa4.69□□□□□ -1.66
CLN6-217ENST00000636964 LCE3AQ5TA76 89 aa4.57□□□□□ -1.68
CLN6-217ENST00000636964 KRTAP10-7P60409 375 aaPredicted RBP4.56□□□□□ -1.68
CLN6-217ENST00000636964 KRTAP10-12P60413 245 aa4.49□□□□□ -1.69
CLN6-217ENST00000636964 LCE4AQ5TA78 99 aa4.47□□□□□ -1.69
CLN6-217ENST00000636964 KRTAP9-2Q9BYQ4 174 aa4.44□□□□□ -1.7
CLN6-217ENST00000636964 SSPOA2VEC9 5147 aa4.42□□□□□ -1.7
CLN6-217ENST00000636964 KRTAP19-4Q3LI73 84 aa4.41□□□□□ -1.7
CLN6-217ENST00000636964 KRTAP8-1Q8IUC2 63 aa4.4□□□□□ -1.7
CLN6-217ENST00000636964 KRTAP9-6A0A140TA67 174 aa4.4□□□□□ -1.71
CLN6-217ENST00000636964 KRTAP4-8A0A0G2JLE6 195 aa4.39□□□□□ -1.71
CLN6-217ENST00000636964 KRTAP4-8Q9BYQ9 185 aa4.39□□□□□ -1.71
CLN6-217ENST00000636964 KRTAP9-7A8MTY7 169 aa4.37□□□□□ -1.71
CLN6-217ENST00000636964 KRTAP12-3P60328 96 aa4.35□□□□□ -1.71
CLN6-217ENST00000636964 KRTAP19-6Q3LI70 58 aa4.32□□□□□ -1.72
CLN6-217ENST00000636964 KRTAP19-5Q3LI72 72 aa4.3□□□□□ -1.72
CLN6-217ENST00000636964 DSTQ03001 7570 aaKnown RBP4.28□□□□□ -1.72
CLN6-217ENST00000636964 KRTAP9-4Q9BYQ2 154 aa4.26□□□□□ -1.73
CLN6-217ENST00000636964 LOC100996750A0A140TA64 210 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 125 ms