RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 FAT3Q8TDW7 4589 aa3.74□□□□□ -1.81
SCN1A-213ENST00000636759 A0A0D9SG42 100 aa3.74□□□□□ -1.81
SCN1A-213ENST00000636759 HSPG2P98160 4391 aa3.73□□□□□ -1.81
SCN1A-213ENST00000636759 TNXBP22105 4242 aa3.73□□□□□ -1.81
SCN1A-213ENST00000636759 KRTAP10-2P60368 255 aa3.66□□□□□ -1.82
SCN1A-213ENST00000636759 TGP01266 2768 aa3.66□□□□□ -1.82
SCN1A-213ENST00000636759 LCE2BO14633 110 aa3.63□□□□□ -1.83
SCN1A-213ENST00000636759 RYR2Q92736 4967 aa3.62□□□□□ -1.83
SCN1A-213ENST00000636759 KRTAP10-1P60331 282 aa3.62□□□□□ -1.83
SCN1A-213ENST00000636759 KRTAP13-2Q52LG2 175 aa3.61□□□□□ -1.83
SCN1A-213ENST00000636759 KMT2CQ8NEZ4 4911 aaKnown RBP3.61□□□□□ -1.83
SCN1A-213ENST00000636759 S4R3F8 94 aa3.61□□□□□ -1.83
SCN1A-213ENST00000636759 DYNC1H1Q14204 4646 aaKnown RBP3.61□□□□□ -1.83
SCN1A-213ENST00000636759 KRTAP3-1Q9BYR8 98 aa3.59□□□□□ -1.83
SCN1A-213ENST00000636759 KRTAP1-4P0C5Y4 121 aa3.58□□□□□ -1.84
SCN1A-213ENST00000636759 KRTAP13-4Q3LI77 160 aa3.57□□□□□ -1.84
SCN1A-213ENST00000636759 PLAC4Q8WY50 150 aa3.56□□□□□ -1.84
SCN1A-213ENST00000636759 A0A1B0GVY2 172 aa3.56□□□□□ -1.84
SCN1A-213ENST00000636759 RYR3Q15413 4870 aa3.56□□□□□ -1.84
SCN1A-213ENST00000636759 FAT1Q14517 4588 aa3.55□□□□□ -1.84
SCN1A-213ENST00000636759 MYCBP2O75592 4640 aa3.54□□□□□ -1.84
SCN1A-213ENST00000636759 KRTAP10-6P60371 365 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-213ENST00000636759 XP32Q5T750 250 aa3.53□□□□□ -1.84
SCN1A-213ENST00000636759 CAMK2N1Q7Z7J9 78 aa3.52□□□□□ -1.85
SCN1A-213ENST00000636759 KRTAP12-2P59991 146 aa3.52□□□□□ -1.85
SCN1A-213ENST00000636759 KRTAP10-4P60372 401 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-213ENST00000636759 C9orf92A6NGG3 77 aa3.51□□□□□ -1.85
SCN1A-213ENST00000636759 LRP1Q07954 4544 aaKnown RBP3.49□□□□□ -1.85
SCN1A-213ENST00000636759 RPS29P62273 56 aaKnown RBP3.48□□□□□ -1.85
SCN1A-213ENST00000636759 LPAP08519 4548 aa3.47□□□□□ -1.85
SCN1A-213ENST00000636759 KRTAP12-1P59990 96 aa3.46□□□□□ -1.85
SCN1A-213ENST00000636759 LCE2CQ5TA81 110 aa3.42□□□□□ -1.86
SCN1A-213ENST00000636759 SMR3BP02814 79 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-213ENST00000636759 RYR1P21817 5038 aa3.39□□□□□ -1.87
SCN1A-213ENST00000636759 M0QZ58 72 aa3.39□□□□□ -1.87
SCN1A-213ENST00000636759 KRTAP10-8P60410 259 aa3.38□□□□□ -1.87
SCN1A-213ENST00000636759 KRTAP17-1Q9BYP8 105 aa3.36□□□□□ -1.87
SCN1A-213ENST00000636759 PRO2289Q9P1D8 64 aa3.35□□□□□ -1.87
SCN1A-213ENST00000636759 EPPK1P58107 5090 aaKnown RBP3.35□□□□□ -1.87
SCN1A-213ENST00000636759 ABCA13Q86UQ4 5058 aa3.34□□□□□ -1.87
SCN1A-213ENST00000636759 BIRC6Q9NR09 4857 aa3.33□□□□□ -1.88
SCN1A-213ENST00000636759 LCE2AQ5TA79 106 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-213ENST00000636759 PP632Q6XCG6 107 aa3.32□□□□□ -1.88
SCN1A-213ENST00000636759 MUC17Q685J3 4493 aa3.32□□□□□ -1.88
SCN1A-213ENST00000636759 Q5VSD8 79 aa3.31□□□□□ -1.88
SCN1A-213ENST00000636759 LORP23490 312 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-213ENST00000636759 KIAA1109Q2LD37 5005 aa3.27□□□□□ -1.89
SCN1A-213ENST00000636759 MT1HL1P0DM35 61 aa3.26□□□□□ -1.89
SCN1A-213ENST00000636759 R4GN34 69 aa3.26□□□□□ -1.89
SCN1A-213ENST00000636759 FLGP20930 4061 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-213ENST00000636759 HERC2O95714 4834 aa3.22□□□□□ -1.89
SCN1A-213ENST00000636759 LRP2P98164 4655 aa3.22□□□□□ -1.89
SCN1A-213ENST00000636759 INE1O15225 51 aa3.21□□□□□ -1.9
SCN1A-213ENST00000636759 PCLOQ9Y6V0 5065 aa3.18□□□□□ -1.9
SCN1A-213ENST00000636759 KRTAP4-5Q9BYR2 181 aa3.16□□□□□ -1.9
SCN1A-213ENST00000636759 SPRR5A0A1B0GTR4 108 aa3.12□□□□□ -1.91
SCN1A-213ENST00000636759 TNP1P09430 55 aa3.08□□□□□ -1.92
SCN1A-213ENST00000636759 KRTAP19-2Q3LHN2 52 aa3.06□□□□□ -1.92
SCN1A-213ENST00000636759 MUC2Q02817 5179 aa3.03□□□□□ -1.92
SCN1A-213ENST00000636759 LOC100996750A0A140TA64 210 aa3.02□□□□□ -1.93
SCN1A-213ENST00000636759 KRTAP23-1A1A580 65 aa3.02□□□□□ -1.93
SCN1A-213ENST00000636759 KRTAP4-6Q9BYQ5 205 aa3.02□□□□□ -1.93
SCN1A-213ENST00000636759 KRTAP4-1Q9BYQ7 146 aa3□□□□□ -1.93
SCN1A-213ENST00000636759 HMCN2Q8NDA2 5059 aa2.97□□□□□ -1.93
SCN1A-213ENST00000636759 HERC1Q15751 4861 aa2.96□□□□□ -1.94
SCN1A-213ENST00000636759 UBR4Q5T4S7 5183 aa2.85□□□□□ -1.95
SCN1A-213ENST00000636759 FAT4Q6V0I7 4981 aa2.83□□□□□ -1.96
SCN1A-213ENST00000636759 LCE3BQ5TA77 95 aa2.8□□□□□ -1.96
SCN1A-213ENST00000636759 KRTAP4-8Q9BYQ9 185 aa2.79□□□□□ -1.96
SCN1A-213ENST00000636759 LCE3AQ5TA76 89 aa2.78□□□□□ -1.96
SCN1A-213ENST00000636759 RNF213Q63HN8 5207 aa2.78□□□□□ -1.96
SCN1A-213ENST00000636759 KRTAP9-6A0A140TA67 174 aa2.76□□□□□ -1.97
SCN1A-213ENST00000636759 KRTAP9-2Q9BYQ4 174 aa2.76□□□□□ -1.97
SCN1A-213ENST00000636759 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-213ENST00000636759 MT1HP80294 61 aa2.74□□□□□ -1.97
SCN1A-213ENST00000636759 KRTAP10-10P60014 251 aa2.7□□□□□ -1.98
SCN1A-213ENST00000636759 KRTAP19-1Q8IUB9 90 aa2.7□□□□□ -1.98
SCN1A-213ENST00000636759 SPRR2GQ9BYE4 73 aa2.69□□□□□ -1.98
SCN1A-213ENST00000636759 KRTAP8-1Q8IUC2 63 aa2.69□□□□□ -1.98
SCN1A-213ENST00000636759 KRTAP9-8Q9BYQ0 159 aa2.68□□□□□ -1.98
SCN1A-213ENST00000636759 KRTAP12-3P60328 96 aa2.66□□□□□ -1.98
SCN1A-213ENST00000636759 MT2AP02795 61 aa2.65□□□□□ -1.98
SCN1A-213ENST00000636759 KRTAP4-12Q9BQ66 201 aa2.65□□□□□ -1.98
SCN1A-213ENST00000636759 MT1FP04733 61 aa2.64□□□□□ -1.99
SCN1A-213ENST00000636759 KRTAP10-12P60413 245 aa2.62□□□□□ -1.99
SCN1A-213ENST00000636759 KRTAP19-4Q3LI73 84 aa2.62□□□□□ -1.99
SCN1A-213ENST00000636759 KRTAP9-9Q9BYP9 154 aa2.61□□□□□ -1.99
SCN1A-213ENST00000636759 KRTAP9-4Q9BYQ2 154 aa2.61□□□□□ -1.99
SCN1A-213ENST00000636759 KRTAP19-8Q3LI54 63 aa2.6□□□□□ -1.99
SCN1A-213ENST00000636759 M0R2T5 61 aa2.6□□□□□ -1.99
SCN1A-213ENST00000636759 KRTAP4-8A0A0G2JLE6 195 aa2.58□□□□□ -2
SCN1A-213ENST00000636759 KRTAP9-3Q9BYQ3 159 aa2.57□□□□□ -2
SCN1A-213ENST00000636759 MT1BP07438 61 aa2.56□□□□□ -2
SCN1A-213ENST00000636759 KRTAP10-5P60370 271 aa2.56□□□□□ -2
SCN1A-213ENST00000636759 MT1XP80297 61 aa2.55□□□□□ -2
SCN1A-213ENST00000636759 LCE1DQ5T752 114 aa2.55□□□□□ -2
SCN1A-213ENST00000636759 LCE4AQ5TA78 99 aa2.55□□□□□ -2
SCN1A-213ENST00000636759 LCE3CQ5T5A8 94 aa2.49□□□□□ -2.01
SCN1A-213ENST00000636759 KRTAP4-7Q9BYR0 210 aa2.48□□□□□ -2.01
SCN1A-213ENST00000636759 KRTAP2-3P0C7H8 128 aa2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 97.9 ms