RNA–Protein interactions for RNA: ENST00000620854.4

NEDD9-216, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5 BASIC

Gene NEDD9, Length 4,086 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-216ENST00000620854 M0R2T5 61 aa3.75□□□□□ -1.81
NEDD9-216ENST00000620854 KRTAP25-1Q3LHN0 102 aa3.75□□□□□ -1.81
NEDD9-216ENST00000620854 KRTAP3-1Q9BYR8 98 aa3.74□□□□□ -1.81
NEDD9-216ENST00000620854 SEC61BP60468 96 aaKnown RBP3.74□□□□□ -1.81
NEDD9-216ENST00000620854 A0A1B0GVY2 172 aa3.73□□□□□ -1.81
NEDD9-216ENST00000620854 MYCBP2O75592 4640 aa3.71□□□□□ -1.82
NEDD9-216ENST00000620854 PKD1P98161 4303 aa3.68□□□□□ -1.82
NEDD9-216ENST00000620854 NDUFAF8A1L188 74 aa3.67□□□□□ -1.82
NEDD9-216ENST00000620854 C10orf95Q9H7T3 257 aa3.66□□□□□ -1.82
NEDD9-216ENST00000620854 DYNC1H1Q14204 4646 aaKnown RBP3.64□□□□□ -1.83
NEDD9-216ENST00000620854 C20orf166-AS1Q96NR2 134 aa3.64□□□□□ -1.83
NEDD9-216ENST00000620854 P0C880 135 aa3.63□□□□□ -1.83
NEDD9-216ENST00000620854 KRTAP13-4Q3LI77 160 aa3.62□□□□□ -1.83
NEDD9-216ENST00000620854 LRP1Q07954 4544 aaKnown RBP3.61□□□□□ -1.83
NEDD9-216ENST00000620854 TPRXLQ17RH7 258 aa3.59□□□□□ -1.83
NEDD9-216ENST00000620854 KRTAP10-8P60410 259 aa3.59□□□□□ -1.84
NEDD9-216ENST00000620854 SACSQ9NZJ4 4579 aa3.58□□□□□ -1.84
NEDD9-216ENST00000620854 HSPG2P98160 4391 aa3.58□□□□□ -1.84
NEDD9-216ENST00000620854 KRTAP10-6P60371 365 aaPredicted RBP3.57□□□□□ -1.84
NEDD9-216ENST00000620854 XP32Q5T750 250 aa3.56□□□□□ -1.84
NEDD9-216ENST00000620854 FAT3Q8TDW7 4589 aa3.55□□□□□ -1.84
NEDD9-216ENST00000620854 APOBP04114 4563 aaKnown RBP3.55□□□□□ -1.84
NEDD9-216ENST00000620854 KRTAP3-3Q9BYR6 98 aa3.54□□□□□ -1.84
NEDD9-216ENST00000620854 PLAC4Q8WY50 150 aa3.52□□□□□ -1.85
NEDD9-216ENST00000620854 KRTAP3-2Q9BYR7 98 aa3.52□□□□□ -1.85
NEDD9-216ENST00000620854 KRTAP12-2P59991 146 aa3.52□□□□□ -1.85
NEDD9-216ENST00000620854 LPAP08519 4548 aa3.5□□□□□ -1.85
NEDD9-216ENST00000620854 PKHD1L1Q86WI1 4243 aa3.49□□□□□ -1.85
NEDD9-216ENST00000620854 KRTAP10-4P60372 401 aaPredicted RBP3.48□□□□□ -1.85
NEDD9-216ENST00000620854 LRP2P98164 4655 aa3.46□□□□□ -1.86
NEDD9-216ENST00000620854 KMT2CQ8NEZ4 4911 aaKnown RBP3.46□□□□□ -1.86
NEDD9-216ENST00000620854 TNP1P09430 55 aa3.44□□□□□ -1.86
NEDD9-216ENST00000620854 KRTAP12-1P59990 96 aa3.44□□□□□ -1.86
NEDD9-216ENST00000620854 KRTAP15-1Q3LI76 137 aa3.42□□□□□ -1.86
NEDD9-216ENST00000620854 MT1HL1P0DM35 61 aa3.42□□□□□ -1.86
NEDD9-216ENST00000620854 TNXBP22105 4242 aa3.39□□□□□ -1.87
NEDD9-216ENST00000620854 KRTAP4-5Q9BYR2 181 aa3.39□□□□□ -1.87
NEDD9-216ENST00000620854 RYR1P21817 5038 aa3.38□□□□□ -1.87
NEDD9-216ENST00000620854 KIAA1109Q2LD37 5005 aa3.38□□□□□ -1.87
NEDD9-216ENST00000620854 PP632Q6XCG6 107 aa3.33□□□□□ -1.88
NEDD9-216ENST00000620854 RYR3Q15413 4870 aa3.32□□□□□ -1.88
NEDD9-216ENST00000620854 RYR2Q92736 4967 aa3.32□□□□□ -1.88
NEDD9-216ENST00000620854 KRTAP17-1Q9BYP8 105 aa3.32□□□□□ -1.88
NEDD9-216ENST00000620854 ABCA13Q86UQ4 5058 aa3.29□□□□□ -1.88
NEDD9-216ENST00000620854 LORP23490 312 aaPredicted RBP3.29□□□□□ -1.88
NEDD9-216ENST00000620854 MUC2Q02817 5179 aa3.28□□□□□ -1.88
NEDD9-216ENST00000620854 KRTAP10-10P60014 251 aa3.28□□□□□ -1.88
NEDD9-216ENST00000620854 EPPK1P58107 5090 aaKnown RBP3.23□□□□□ -1.89
NEDD9-216ENST00000620854 KRTAP23-1A1A580 65 aa3.22□□□□□ -1.89
NEDD9-216ENST00000620854 KRTAP4-1Q9BYQ7 146 aa3.14□□□□□ -1.91
NEDD9-216ENST00000620854 HERC2O95714 4834 aa3.11□□□□□ -1.91
NEDD9-216ENST00000620854 BIRC6Q9NR09 4857 aa3.09□□□□□ -1.91
NEDD9-216ENST00000620854 FAT4Q6V0I7 4981 aa3.09□□□□□ -1.91
NEDD9-216ENST00000620854 PRO2289Q9P1D8 64 aa3.09□□□□□ -1.92
NEDD9-216ENST00000620854 MUC17Q685J3 4493 aa3.08□□□□□ -1.92
NEDD9-216ENST00000620854 LCE2BO14633 110 aa3.08□□□□□ -1.92
NEDD9-216ENST00000620854 PCLOQ9Y6V0 5065 aa3.03□□□□□ -1.92
NEDD9-216ENST00000620854 RNF213Q63HN8 5207 aa2.98□□□□□ -1.93
NEDD9-216ENST00000620854 HERC1Q15751 4861 aa2.98□□□□□ -1.93
NEDD9-216ENST00000620854 LCE2AQ5TA79 106 aaPredicted RBP2.97□□□□□ -1.93
NEDD9-216ENST00000620854 KRTAP19-2Q3LHN2 52 aa2.97□□□□□ -1.93
NEDD9-216ENST00000620854 FLGP20930 4061 aaPredicted RBP2.97□□□□□ -1.93
NEDD9-216ENST00000620854 HMCN2Q8NDA2 5059 aa2.93□□□□□ -1.94
NEDD9-216ENST00000620854 MT1HP80294 61 aa2.91□□□□□ -1.94
NEDD9-216ENST00000620854 KRTAP10-12P60413 245 aa2.89□□□□□ -1.95
NEDD9-216ENST00000620854 LCE3AQ5TA76 89 aa2.89□□□□□ -1.95
NEDD9-216ENST00000620854 KRTAP12-3P60328 96 aa2.86□□□□□ -1.95
NEDD9-216ENST00000620854 SPRR5A0A1B0GTR4 108 aa2.86□□□□□ -1.95
NEDD9-216ENST00000620854 CRCT1Q9UGL9 99 aa2.85□□□□□ -1.95
NEDD9-216ENST00000620854 MT2AP02795 61 aa2.84□□□□□ -1.95
NEDD9-216ENST00000620854 UBR4Q5T4S7 5183 aa2.84□□□□□ -1.96
NEDD9-216ENST00000620854 LCE2CQ5TA81 110 aa2.83□□□□□ -1.96
NEDD9-216ENST00000620854 KRTAP19-1Q8IUB9 90 aa2.83□□□□□ -1.96
NEDD9-216ENST00000620854 MT1FP04733 61 aa2.8□□□□□ -1.96
NEDD9-216ENST00000620854 INE1O15225 51 aa2.79□□□□□ -1.96
NEDD9-216ENST00000620854 SPRR2GQ9BYE4 73 aa2.79□□□□□ -1.96
NEDD9-216ENST00000620854 KMT2DO14686 5537 aa2.77□□□□□ -1.97
NEDD9-216ENST00000620854 USH2AO75445 5202 aa2.75□□□□□ -1.97
NEDD9-216ENST00000620854 LOC100996750A0A140TA64 210 aa2.7□□□□□ -1.98
NEDD9-216ENST00000620854 KRTAP8-1Q8IUC2 63 aa2.7□□□□□ -1.98
NEDD9-216ENST00000620854 KRTAP4-6Q9BYQ5 205 aa2.7□□□□□ -1.98
NEDD9-216ENST00000620854 KRTAP10-7P60409 375 aaPredicted RBP2.68□□□□□ -1.98
NEDD9-216ENST00000620854 KRTAP9-8Q9BYQ0 159 aa2.68□□□□□ -1.98
NEDD9-216ENST00000620854 KRTAP10-5P60370 271 aa2.68□□□□□ -1.98
NEDD9-216ENST00000620854 MT1XP80297 61 aa2.68□□□□□ -1.98
NEDD9-216ENST00000620854 MT1BP07438 61 aa2.65□□□□□ -1.99
NEDD9-216ENST00000620854 KRTAP19-8Q3LI54 63 aa2.65□□□□□ -1.99
NEDD9-216ENST00000620854 SYNE1Q8NF91 8797 aaKnown RBP2.63□□□□□ -1.99
NEDD9-216ENST00000620854 KRTAP9-3Q9BYQ3 159 aa2.6□□□□□ -1.99
NEDD9-216ENST00000620854 FSIP2Q5CZC0 6907 aa2.59□□□□□ -1.99
NEDD9-216ENST00000620854 KRTAP19-5Q3LI72 72 aa2.58□□□□□ -2
NEDD9-216ENST00000620854 KRTAP4-8A0A0G2JLE6 195 aa2.56□□□□□ -2
NEDD9-216ENST00000620854 KRTAP4-8Q9BYQ9 185 aa2.56□□□□□ -2
NEDD9-216ENST00000620854 LCE3CQ5T5A8 94 aa2.54□□□□□ -2
NEDD9-216ENST00000620854 KRTAP4-7Q9BYR0 210 aa2.54□□□□□ -2
NEDD9-216ENST00000620854 OBSCNQ5VST9 7968 aa2.53□□□□□ -2.01
NEDD9-216ENST00000620854 KRTAP9-6A8MVA2 160 aa2.51□□□□□ -2.01
NEDD9-216ENST00000620854 SPRR2FQ96RM1 72 aa2.49□□□□□ -2.01
NEDD9-216ENST00000620854 DSTQ03001 7570 aaKnown RBP2.49□□□□□ -2.01
NEDD9-216ENST00000620854 KRTAP19-4Q3LI73 84 aa2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms