RNA–Protein interactions for RNA: ENST00000617456.1

GPC6-202, Transcript of glypican 6, humanhuman

TSL 3 BASIC

Gene GPC6, Length 792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-202ENST00000617456 KRTAP4-1Q9BYQ7 146 aa4.84□□□□□ -1.63
GPC6-202ENST00000617456 Q6ZQY7 126 aa4.83□□□□□ -1.64
GPC6-202ENST00000617456 Q6ZRX8 168 aa4.83□□□□□ -1.64
GPC6-202ENST00000617456 Q8N9L7 120 aa4.82□□□□□ -1.64
GPC6-202ENST00000617456 UQCR11O14957 56 aa4.81□□□□□ -1.64
GPC6-202ENST00000617456 Q8NBF4 154 aa4.81□□□□□ -1.64
GPC6-202ENST00000617456 C20orf166-AS1Q96NR2 134 aa4.81□□□□□ -1.64
GPC6-202ENST00000617456 K7ERS5 55 aa4.8□□□□□ -1.64
GPC6-202ENST00000617456 KRTAP13-3Q3SY46 172 aa4.8□□□□□ -1.64
GPC6-202ENST00000617456 C8orf17Q9NRJ1 99 aa4.79□□□□□ -1.64
GPC6-202ENST00000617456 A8MWP4 228 aa4.78□□□□□ -1.64
GPC6-202ENST00000617456 DMAC1Q96GE9 116 aa4.78□□□□□ -1.64
GPC6-202ENST00000617456 DHRS4-AS1Q9P1J3 65 aa4.78□□□□□ -1.64
GPC6-202ENST00000617456 SPRR1BP22528 89 aa4.77□□□□□ -1.65
GPC6-202ENST00000617456 IGLV5-48A0A075B6I7 105 aa4.76□□□□□ -1.65
GPC6-202ENST00000617456 DSCR10P59022 87 aa4.76□□□□□ -1.65
GPC6-202ENST00000617456 LUZP6Q538Z0 58 aa4.76□□□□□ -1.65
GPC6-202ENST00000617456 Q8N377 158 aa4.76□□□□□ -1.65
GPC6-202ENST00000617456 MT1HP80294 61 aa4.71□□□□□ -1.66
GPC6-202ENST00000617456 XP32Q5T750 250 aa4.71□□□□□ -1.66
GPC6-202ENST00000617456 HRES1P13985 223 aa4.7□□□□□ -1.66
GPC6-202ENST00000617456 Q5W150 140 aa4.7□□□□□ -1.66
GPC6-202ENST00000617456 KRTAP19-2Q3LHN2 52 aa4.69□□□□□ -1.66
GPC6-202ENST00000617456 A8MUU9 505 aa4.67□□□□□ -1.66
GPC6-202ENST00000617456 KRTAP3-1Q9BYR8 98 aa4.67□□□□□ -1.66
GPC6-202ENST00000617456 K7EQZ3 153 aa4.66□□□□□ -1.66
GPC6-202ENST00000617456 KRTAP10-6P60371 365 aaPredicted RBP4.66□□□□□ -1.66
GPC6-202ENST00000617456 PCOTHQ58A44 107 aa4.66□□□□□ -1.66
GPC6-202ENST00000617456 LINC00472Q9H8W2 130 aa4.66□□□□□ -1.66
GPC6-202ENST00000617456 IGLV8-61A0A075B6I0 122 aa4.65□□□□□ -1.67
GPC6-202ENST00000617456 KRTAP15-1Q3LI76 137 aa4.65□□□□□ -1.67
GPC6-202ENST00000617456 TP53AIP1Q9HCN2 124 aa4.65□□□□□ -1.67
GPC6-202ENST00000617456 M0R2T5 61 aa4.64□□□□□ -1.67
GPC6-202ENST00000617456 NDUFAF8A1L188 74 aa4.63□□□□□ -1.67
GPC6-202ENST00000617456 KRTAP9-7A8MTY7 169 aa4.62□□□□□ -1.67
GPC6-202ENST00000617456 CAMK2N1Q7Z7J9 78 aa4.62□□□□□ -1.67
GPC6-202ENST00000617456 DEFB105AQ8NG35 78 aa4.62□□□□□ -1.67
GPC6-202ENST00000617456 A0A1B0GU69 56 aa4.61□□□□□ -1.67
GPC6-202ENST00000617456 C9orf92A6NGG3 77 aa4.61□□□□□ -1.67
GPC6-202ENST00000617456 KRTAP19-4Q3LI73 84 aa4.6□□□□□ -1.67
GPC6-202ENST00000617456 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.59□□□□□ -1.67
GPC6-202ENST00000617456 COX6B2Q6YFQ2 88 aa4.59□□□□□ -1.67
GPC6-202ENST00000617456 A0A1B0GVX0 72 aa4.58□□□□□ -1.68
GPC6-202ENST00000617456 ACYP2P14621 99 aa4.58□□□□□ -1.68
GPC6-202ENST00000617456 FLGP20930 4061 aaPredicted RBP4.56□□□□□ -1.68
GPC6-202ENST00000617456 RPL37P61927 97 aaKnown RBP4.54□□□□□ -1.68
GPC6-202ENST00000617456 WFDC13Q8IUB5 93 aa4.52□□□□□ -1.69
GPC6-202ENST00000617456 IGFL1Q6UW32 110 aa4.51□□□□□ -1.69
GPC6-202ENST00000617456 USH2AO75445 5202 aa4.5□□□□□ -1.69
GPC6-202ENST00000617456 SSPOA2VEC9 5147 aa4.5□□□□□ -1.69
GPC6-202ENST00000617456 A0A0G2JQZ4 141 aa4.49□□□□□ -1.69
GPC6-202ENST00000617456 FCGBPQ9Y6R7 5405 aaPredicted RBP4.47□□□□□ -1.69
GPC6-202ENST00000617456 SYNE2Q8WXH0 6885 aaKnown RBP4.47□□□□□ -1.69
GPC6-202ENST00000617456 SPINT4Q6UDR6 99 aa4.46□□□□□ -1.7
GPC6-202ENST00000617456 Q96NJ1 140 aa4.46□□□□□ -1.7
GPC6-202ENST00000617456 MMP24-AS1A0A0U1RRL7 71 aa4.45□□□□□ -1.7
GPC6-202ENST00000617456 DEFB116Q30KQ4 102 aa4.43□□□□□ -1.7
GPC6-202ENST00000617456 MACF1Q9UPN3 7388 aaKnown RBP4.42□□□□□ -1.7
GPC6-202ENST00000617456 KRTAP9-8Q9BYQ0 159 aa4.4□□□□□ -1.71
GPC6-202ENST00000617456 A0A1B0GU33 70 aa4.39□□□□□ -1.71
GPC6-202ENST00000617456 KRTAP19-1Q8IUB9 90 aa4.38□□□□□ -1.71
GPC6-202ENST00000617456 MT2AP02795 61 aa4.33□□□□□ -1.72
GPC6-202ENST00000617456 H0YAA0 97 aa4.3□□□□□ -1.72
GPC6-202ENST00000617456 MT1FP04733 61 aa4.3□□□□□ -1.72
GPC6-202ENST00000617456 KRTAP10-10P60014 251 aa4.29□□□□□ -1.72
GPC6-202ENST00000617456 MRPL34Q9BQ48 92 aaKnown RBP4.29□□□□□ -1.72
GPC6-202ENST00000617456 LOC100996750A0A140TA64 210 aa4.27□□□□□ -1.73
GPC6-202ENST00000617456 KRTAP9-3Q9BYQ3 159 aa4.27□□□□□ -1.73
GPC6-202ENST00000617456 KRTAP4-6Q9BYQ5 205 aa4.27□□□□□ -1.73
GPC6-202ENST00000617456 PRO2289Q9P1D8 64 aa4.25□□□□□ -1.73
GPC6-202ENST00000617456 NEBP20929 6669 aa4.24□□□□□ -1.73
GPC6-202ENST00000617456 KRTAP19-6Q3LI70 58 aa4.2□□□□□ -1.74
GPC6-202ENST00000617456 KRTAP6-3Q3LI67 103 aa4.19□□□□□ -1.74
GPC6-202ENST00000617456 H1FX-AS1Q4G0G2 97 aa4.17□□□□□ -1.74
GPC6-202ENST00000617456 IGKV2-30P06310 120 aa4.16□□□□□ -1.74
GPC6-202ENST00000617456 IGKV2D-30A0A075B6S6 120 aa4.15□□□□□ -1.75
GPC6-202ENST00000617456 CRIPTQ9P021 101 aa4.14□□□□□ -1.75
GPC6-202ENST00000617456 PLAC4Q8WY50 150 aa4.11□□□□□ -1.75
GPC6-202ENST00000617456 MUC12Q9UKN1 5478 aa4.06□□□□□ -1.76
GPC6-202ENST00000617456 LCE4AQ5TA78 99 aa4.05□□□□□ -1.76
GPC6-202ENST00000617456 INE1O15225 51 aa4.04□□□□□ -1.76
GPC6-202ENST00000617456 KRTAP20-1Q3LI63 56 aa4.04□□□□□ -1.76
GPC6-202ENST00000617456 KRTAP4-8Q9BYQ9 185 aa4.03□□□□□ -1.76
GPC6-202ENST00000617456 KRTAP9-4Q9BYQ2 154 aa4.02□□□□□ -1.77
GPC6-202ENST00000617456 KRTAP4-12Q9BQ66 201 aa4□□□□□ -1.77
GPC6-202ENST00000617456 R4GN34 69 aa4□□□□□ -1.77
GPC6-202ENST00000617456 C10orf95Q9H7T3 257 aa3.96□□□□□ -1.78
GPC6-202ENST00000617456 MDN1Q9NU22 5596 aa3.94□□□□□ -1.78
GPC6-202ENST00000617456 KRTAP9-9Q9BYP9 154 aa3.94□□□□□ -1.78
GPC6-202ENST00000617456 KMT2DO14686 5537 aa3.91□□□□□ -1.78
GPC6-202ENST00000617456 KRTAP12-2P59991 146 aa3.89□□□□□ -1.79
GPC6-202ENST00000617456 S4R3F8 94 aa3.87□□□□□ -1.79
GPC6-202ENST00000617456 MT1BP07438 61 aa3.86□□□□□ -1.79
GPC6-202ENST00000617456 KRTAP5-9P26371 169 aa3.85□□□□□ -1.79
GPC6-202ENST00000617456 LCE3BQ5TA77 95 aa3.85□□□□□ -1.79
GPC6-202ENST00000617456 SPRR2GQ9BYE4 73 aa3.85□□□□□ -1.79
GPC6-202ENST00000617456 KRTAP2-3P0C7H8 128 aa3.84□□□□□ -1.79
GPC6-202ENST00000617456 KRTAP2-4Q9BYR9 128 aa3.84□□□□□ -1.79
GPC6-202ENST00000617456 KRTAP10-5P60370 271 aa3.82□□□□□ -1.8
GPC6-202ENST00000617456 KRTAP19-8Q3LI54 63 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms