RNA–Protein interactions for RNA: ENST00000616122.4

SYNCRIP-204, Transcript of synaptotagmin binding cytoplasmic RNA interacting protein, humanhuman

TSL 1 (best) BASIC

Gene SYNCRIP, Length 6,764 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNCRIP-204ENST00000616122 TPRXLQ17RH7 258 aa2.86□□□□□ -1.95
SYNCRIP-204ENST00000616122 DNAH10Q8IVF4 4471 aa2.85□□□□□ -1.95
SYNCRIP-204ENST00000616122 PRKDCP78527 4128 aaKnown RBP2.84□□□□□ -1.95
SYNCRIP-204ENST00000616122 MT1HL1P0DM35 61 aa2.82□□□□□ -1.96
SYNCRIP-204ENST00000616122 KRTAP10-6P60371 365 aaPredicted RBP2.82□□□□□ -1.96
SYNCRIP-204ENST00000616122 DNAH1Q9P2D7 4330 aa2.81□□□□□ -1.96
SYNCRIP-204ENST00000616122 VPS13DQ5THJ4 4388 aa2.8□□□□□ -1.96
SYNCRIP-204ENST00000616122 HERC2O95714 4834 aa2.8□□□□□ -1.96
SYNCRIP-204ENST00000616122 FAT3Q8TDW7 4589 aa2.8□□□□□ -1.96
SYNCRIP-204ENST00000616122 SACSQ9NZJ4 4579 aa2.79□□□□□ -1.96
SYNCRIP-204ENST00000616122 APOBP04114 4563 aaKnown RBP2.78□□□□□ -1.96
SYNCRIP-204ENST00000616122 DNAH2Q9P225 4427 aa2.78□□□□□ -1.96
SYNCRIP-204ENST00000616122 KMT2CQ8NEZ4 4911 aaKnown RBP2.78□□□□□ -1.96
SYNCRIP-204ENST00000616122 KRTAP13-4Q3LI77 160 aa2.78□□□□□ -1.96
SYNCRIP-204ENST00000616122 LYSTQ99698 3801 aa2.78□□□□□ -1.96
SYNCRIP-204ENST00000616122 LRP1Q07954 4544 aaKnown RBP2.77□□□□□ -1.97
SYNCRIP-204ENST00000616122 DNAH17Q9UFH2 4485 aa2.76□□□□□ -1.97
SYNCRIP-204ENST00000616122 KRTAP3-3Q9BYR6 98 aa2.76□□□□□ -1.97
SYNCRIP-204ENST00000616122 KRTAP3-2Q9BYR7 98 aa2.76□□□□□ -1.97
SYNCRIP-204ENST00000616122 RYR2Q92736 4967 aa2.75□□□□□ -1.97
SYNCRIP-204ENST00000616122 LRP2P98164 4655 aa2.75□□□□□ -1.97
SYNCRIP-204ENST00000616122 EPPK1P58107 5090 aaKnown RBP2.73□□□□□ -1.97
SYNCRIP-204ENST00000616122 KRTAP12-1P59990 96 aa2.72□□□□□ -1.97
SYNCRIP-204ENST00000616122 RNF213Q63HN8 5207 aa2.72□□□□□ -1.97
SYNCRIP-204ENST00000616122 KRTAP12-2P59991 146 aa2.71□□□□□ -1.98
SYNCRIP-204ENST00000616122 KRTAP4-5Q9BYR2 181 aa2.71□□□□□ -1.98
SYNCRIP-204ENST00000616122 ANK2Q01484 3957 aa2.71□□□□□ -1.98
SYNCRIP-204ENST00000616122 ABCA13Q86UQ4 5058 aa2.69□□□□□ -1.98
SYNCRIP-204ENST00000616122 CRCT1Q9UGL9 99 aa2.69□□□□□ -1.98
SYNCRIP-204ENST00000616122 OBSCNQ5VST9 7968 aa2.67□□□□□ -1.98
SYNCRIP-204ENST00000616122 SYNE1Q8NF91 8797 aaKnown RBP2.66□□□□□ -1.98
SYNCRIP-204ENST00000616122 TNP1P09430 55 aa2.66□□□□□ -1.98
SYNCRIP-204ENST00000616122 UBR4Q5T4S7 5183 aa2.65□□□□□ -1.99
SYNCRIP-204ENST00000616122 KMT2AQ03164 3969 aa2.64□□□□□ -1.99
SYNCRIP-204ENST00000616122 KRTAP23-1A1A580 65 aa2.63□□□□□ -1.99
SYNCRIP-204ENST00000616122 KRTAP17-1Q9BYP8 105 aa2.61□□□□□ -1.99
SYNCRIP-204ENST00000616122 VPS13BQ7Z7G8 4022 aa2.6□□□□□ -1.99
SYNCRIP-204ENST00000616122 KRTAP10-10P60014 251 aa2.59□□□□□ -1.99
SYNCRIP-204ENST00000616122 BIRC6Q9NR09 4857 aa2.58□□□□□ -2
SYNCRIP-204ENST00000616122 PKHD1P08F94 4074 aa2.57□□□□□ -2
SYNCRIP-204ENST00000616122 LORP23490 312 aaPredicted RBP2.57□□□□□ -2
SYNCRIP-204ENST00000616122 DYNC2H1Q8NCM8 4307 aaKnown RBP2.57□□□□□ -2
SYNCRIP-204ENST00000616122 DNAH6Q9C0G6 4158 aa2.56□□□□□ -2
SYNCRIP-204ENST00000616122 FAT4Q6V0I7 4981 aa2.55□□□□□ -2
SYNCRIP-204ENST00000616122 HERC1Q15751 4861 aa2.55□□□□□ -2
SYNCRIP-204ENST00000616122 KRTAP4-1Q9BYQ7 146 aa2.55□□□□□ -2
SYNCRIP-204ENST00000616122 DNAH3Q8TD57 4116 aa2.55□□□□□ -2
SYNCRIP-204ENST00000616122 CMYA5Q8N3K9 4069 aa2.55□□□□□ -2
SYNCRIP-204ENST00000616122 MUC2Q02817 5179 aa2.53□□□□□ -2
SYNCRIP-204ENST00000616122 FSIP2Q5CZC0 6907 aa2.52□□□□□ -2.01
SYNCRIP-204ENST00000616122 FAT2Q9NYQ8 4349 aa2.5□□□□□ -2.01
SYNCRIP-204ENST00000616122 DNAH7Q8WXX0 4024 aa2.5□□□□□ -2.01
SYNCRIP-204ENST00000616122 KRTAP15-1Q3LI76 137 aa2.47□□□□□ -2.01
SYNCRIP-204ENST00000616122 HECTD4Q9Y4D8 3996 aa2.46□□□□□ -2.02
SYNCRIP-204ENST00000616122 ALMS1Q8TCU4 4167 aa2.46□□□□□ -2.02
SYNCRIP-204ENST00000616122 KRTAP10-12P60413 245 aa2.45□□□□□ -2.02
SYNCRIP-204ENST00000616122 HMCN2Q8NDA2 5059 aa2.45□□□□□ -2.02
SYNCRIP-204ENST00000616122 MUC17Q685J3 4493 aa2.44□□□□□ -2.02
SYNCRIP-204ENST00000616122 HSPG2P98160 4391 aa2.42□□□□□ -2.02
SYNCRIP-204ENST00000616122 PRO2289Q9P1D8 64 aa2.41□□□□□ -2.02
SYNCRIP-204ENST00000616122 KRTAP12-3P60328 96 aa2.4□□□□□ -2.03
SYNCRIP-204ENST00000616122 PKD1P98161 4303 aa2.39□□□□□ -2.03
SYNCRIP-204ENST00000616122 FRAS1Q86XX4 4008 aa2.38□□□□□ -2.03
SYNCRIP-204ENST00000616122 KRTAP19-1Q8IUB9 90 aa2.36□□□□□ -2.03
SYNCRIP-204ENST00000616122 MT2AP02795 61 aa2.36□□□□□ -2.03
SYNCRIP-204ENST00000616122 SPRR2GQ9BYE4 73 aa2.35□□□□□ -2.03
SYNCRIP-204ENST00000616122 KRTAP19-2Q3LHN2 52 aa2.34□□□□□ -2.03
SYNCRIP-204ENST00000616122 KRTAP10-5P60370 271 aa2.34□□□□□ -2.04
SYNCRIP-204ENST00000616122 DSTQ03001 7570 aaKnown RBP2.33□□□□□ -2.04
SYNCRIP-204ENST00000616122 MT1HP80294 61 aa2.33□□□□□ -2.04
SYNCRIP-204ENST00000616122 MT1FP04733 61 aa2.33□□□□□ -2.04
SYNCRIP-204ENST00000616122 USH2AO75445 5202 aa2.32□□□□□ -2.04
SYNCRIP-204ENST00000616122 LCE2CQ5TA81 110 aa2.31□□□□□ -2.04
SYNCRIP-204ENST00000616122 LCE3AQ5TA76 89 aa2.3□□□□□ -2.04
SYNCRIP-204ENST00000616122 LPAP08519 4548 aa2.3□□□□□ -2.04
SYNCRIP-204ENST00000616122 KRTAP8-1Q8IUC2 63 aa2.29□□□□□ -2.04
SYNCRIP-204ENST00000616122 FCGBPQ9Y6R7 5405 aaPredicted RBP2.28□□□□□ -2.04
SYNCRIP-204ENST00000616122 KRTAP19-8Q3LI54 63 aa2.24□□□□□ -2.05
SYNCRIP-204ENST00000616122 KRTAP9-8Q9BYQ0 159 aa2.24□□□□□ -2.05
SYNCRIP-204ENST00000616122 MT1BP07438 61 aa2.21□□□□□ -2.06
SYNCRIP-204ENST00000616122 LCE4AQ5TA78 99 aa2.2□□□□□ -2.06
SYNCRIP-204ENST00000616122 KRTAP19-4Q3LI73 84 aa2.19□□□□□ -2.06
SYNCRIP-204ENST00000616122 INE1O15225 51 aa2.19□□□□□ -2.06
SYNCRIP-204ENST00000616122 FLGP20930 4061 aaPredicted RBP2.18□□□□□ -2.06
SYNCRIP-204ENST00000616122 MT1XP80297 61 aa2.17□□□□□ -2.06
SYNCRIP-204ENST00000616122 KMT2DO14686 5537 aa2.16□□□□□ -2.06
SYNCRIP-204ENST00000616122 PKHD1L1Q86WI1 4243 aa2.15□□□□□ -2.06
SYNCRIP-204ENST00000616122 SPRR5A0A1B0GTR4 108 aa2.15□□□□□ -2.07
SYNCRIP-204ENST00000616122 KRTAP9-3Q9BYQ3 159 aa2.15□□□□□ -2.07
SYNCRIP-204ENST00000616122 TNXBP22105 4242 aa2.14□□□□□ -2.07
SYNCRIP-204ENST00000616122 LCE3BQ5TA77 95 aa2.13□□□□□ -2.07
SYNCRIP-204ENST00000616122 MT3P25713 68 aa2.12□□□□□ -2.07
SYNCRIP-204ENST00000616122 SSPOA2VEC9 5147 aa2.12□□□□□ -2.07
SYNCRIP-204ENST00000616122 MACF1Q9UPN3 7388 aaKnown RBP2.11□□□□□ -2.07
SYNCRIP-204ENST00000616122 KRTAP19-5Q3LI72 72 aa2.1□□□□□ -2.07
SYNCRIP-204ENST00000616122 LCE2BO14633 110 aa2.09□□□□□ -2.07
SYNCRIP-204ENST00000616122 MUC12Q9UKN1 5478 aa2.09□□□□□ -2.08
SYNCRIP-204ENST00000616122 KRTAP4-8A0A0G2JLE6 195 aa2.08□□□□□ -2.08
SYNCRIP-204ENST00000616122 KRTAP4-8Q9BYQ9 185 aa2.08□□□□□ -2.08
SYNCRIP-204ENST00000616122 SYNE2Q8WXH0 6885 aaKnown RBP2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms