RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 HUWE1Q7Z6Z7 4374 aaKnown RBP2.33□□□□□ -2.04
VPS13D-213ENST00000613099 CSMD2Q7Z408 3487 aa2.33□□□□□ -2.04
VPS13D-213ENST00000613099 SVEP1Q4LDE5 3571 aa2.33□□□□□ -2.04
VPS13D-213ENST00000613099 A0A1B0GVY2 172 aa2.31□□□□□ -2.04
VPS13D-213ENST00000613099 DYNC2H1Q8NCM8 4307 aaKnown RBP2.3□□□□□ -2.04
VPS13D-213ENST00000613099 CUBNO60494 3623 aa2.29□□□□□ -2.04
VPS13D-213ENST00000613099 DNAH11Q96DT5 4516 aa2.29□□□□□ -2.04
VPS13D-213ENST00000613099 DNAH10Q8IVF4 4471 aa2.28□□□□□ -2.04
VPS13D-213ENST00000613099 ANK3Q12955 4377 aaKnown RBP2.26□□□□□ -2.05
VPS13D-213ENST00000613099 KRTAP3-3Q9BYR6 98 aa2.25□□□□□ -2.05
VPS13D-213ENST00000613099 LORP23490 312 aaPredicted RBP2.25□□□□□ -2.05
VPS13D-213ENST00000613099 KMT2AQ03164 3969 aa2.22□□□□□ -2.05
VPS13D-213ENST00000613099 PKHD1P08F94 4074 aa2.21□□□□□ -2.06
VPS13D-213ENST00000613099 FAT2Q9NYQ8 4349 aa2.16□□□□□ -2.06
VPS13D-213ENST00000613099 DNAH2Q9P225 4427 aa2.16□□□□□ -2.06
VPS13D-213ENST00000613099 DYNC1H1Q14204 4646 aaKnown RBP2.15□□□□□ -2.06
VPS13D-213ENST00000613099 LYSTQ99698 3801 aa2.15□□□□□ -2.07
VPS13D-213ENST00000613099 CSMD3Q7Z407 3707 aa2.15□□□□□ -2.07
VPS13D-213ENST00000613099 MT3P25713 68 aa2.14□□□□□ -2.07
VPS13D-213ENST00000613099 VPS13DQ5THJ4 4388 aa2.14□□□□□ -2.07
VPS13D-213ENST00000613099 DNHD1Q96M86 4753 aa2.14□□□□□ -2.07
VPS13D-213ENST00000613099 DNAH9Q9NYC9 4486 aa2.14□□□□□ -2.07
VPS13D-213ENST00000613099 PKHD1L1Q86WI1 4243 aa2.14□□□□□ -2.07
VPS13D-213ENST00000613099 DNAH8Q96JB1 4490 aa2.13□□□□□ -2.07
VPS13D-213ENST00000613099 KRTAP10-10P60014 251 aa2.12□□□□□ -2.07
VPS13D-213ENST00000613099 PLECQ15149 4684 aaKnown RBP2.12□□□□□ -2.07
VPS13D-213ENST00000613099 KRTAP12-3P60328 96 aa2.11□□□□□ -2.07
VPS13D-213ENST00000613099 MYCBP2O75592 4640 aa2.09□□□□□ -2.08
VPS13D-213ENST00000613099 DNAH17Q9UFH2 4485 aa2.09□□□□□ -2.08
VPS13D-213ENST00000613099 BIRC6Q9NR09 4857 aa2.07□□□□□ -2.08
VPS13D-213ENST00000613099 SPRR5A0A1B0GTR4 108 aa2.06□□□□□ -2.08
VPS13D-213ENST00000613099 KRTAP10-12P60413 245 aa2.06□□□□□ -2.08
VPS13D-213ENST00000613099 RYR2Q92736 4967 aa2.05□□□□□ -2.08
VPS13D-213ENST00000613099 LRP1BQ9NZR2 4599 aa2.04□□□□□ -2.08
VPS13D-213ENST00000613099 SPRR2GQ9BYE4 73 aa2.04□□□□□ -2.08
VPS13D-213ENST00000613099 PCLOQ9Y6V0 5065 aa2.03□□□□□ -2.08
VPS13D-213ENST00000613099 RYR3Q15413 4870 aa2.03□□□□□ -2.09
VPS13D-213ENST00000613099 LCE3AQ5TA76 89 aa2.02□□□□□ -2.09
VPS13D-213ENST00000613099 SACSQ9NZJ4 4579 aa2.01□□□□□ -2.09
VPS13D-213ENST00000613099 FAT3Q8TDW7 4589 aa2□□□□□ -2.09
VPS13D-213ENST00000613099 TNXBP22105 4242 aa2□□□□□ -2.09
VPS13D-213ENST00000613099 LRP1Q07954 4544 aaKnown RBP1.99□□□□□ -2.09
VPS13D-213ENST00000613099 APOBP04114 4563 aaKnown RBP1.99□□□□□ -2.09
VPS13D-213ENST00000613099 KRTAP10-4P60372 401 aaPredicted RBP1.99□□□□□ -2.09
VPS13D-213ENST00000613099 FAT1Q14517 4588 aa1.98□□□□□ -2.09
VPS13D-213ENST00000613099 MT1HL1P0DM35 61 aa1.98□□□□□ -2.09
VPS13D-213ENST00000613099 DNAH5Q8TE73 4624 aa1.98□□□□□ -2.09
VPS13D-213ENST00000613099 KRTAP4-5Q9BYR2 181 aa1.98□□□□□ -2.09
VPS13D-213ENST00000613099 HYDINQ4G0P3 5121 aa1.97□□□□□ -2.09
VPS13D-213ENST00000613099 PKD1P98161 4303 aa1.97□□□□□ -2.09
VPS13D-213ENST00000613099 CRCT1Q9UGL9 99 aa1.96□□□□□ -2.1
VPS13D-213ENST00000613099 HSPG2P98160 4391 aa1.93□□□□□ -2.1
VPS13D-213ENST00000613099 KRTAP10-5P60370 271 aa1.93□□□□□ -2.1
VPS13D-213ENST00000613099 KRTAP8-1Q8IUC2 63 aa1.93□□□□□ -2.1
VPS13D-213ENST00000613099 MDN1Q9NU22 5596 aa1.92□□□□□ -2.1
VPS13D-213ENST00000613099 LCE3CQ5T5A8 94 aa1.92□□□□□ -2.1
VPS13D-213ENST00000613099 EPPK1P58107 5090 aaKnown RBP1.9□□□□□ -2.11
VPS13D-213ENST00000613099 KRTAP19-8Q3LI54 63 aa1.88□□□□□ -2.11
VPS13D-213ENST00000613099 KMT2CQ8NEZ4 4911 aaKnown RBP1.87□□□□□ -2.11
VPS13D-213ENST00000613099 STARD9Q9P2P6 4700 aa1.86□□□□□ -2.11
VPS13D-213ENST00000613099 KRTAP12-4P60329 112 aa1.86□□□□□ -2.11
VPS13D-213ENST00000613099 LCE2CQ5TA81 110 aa1.84□□□□□ -2.11
VPS13D-213ENST00000613099 HERC2O95714 4834 aa1.83□□□□□ -2.12
VPS13D-213ENST00000613099 LRP2P98164 4655 aa1.83□□□□□ -2.12
VPS13D-213ENST00000613099 KRTAP17-1Q9BYP8 105 aa1.82□□□□□ -2.12
VPS13D-213ENST00000613099 ABCA13Q86UQ4 5058 aa1.82□□□□□ -2.12
VPS13D-213ENST00000613099 UBR4Q5T4S7 5183 aa1.81□□□□□ -2.12
VPS13D-213ENST00000613099 HMCN2Q8NDA2 5059 aa1.81□□□□□ -2.12
VPS13D-213ENST00000613099 AHNAK2Q8IVF2 5795 aa1.8□□□□□ -2.12
VPS13D-213ENST00000613099 RNF213Q63HN8 5207 aa1.8□□□□□ -2.12
VPS13D-213ENST00000613099 MT1GP13640 62 aa1.8□□□□□ -2.12
VPS13D-213ENST00000613099 HERC1Q15751 4861 aa1.79□□□□□ -2.12
VPS13D-213ENST00000613099 LCE1AQ5T7P2 110 aa1.79□□□□□ -2.12
VPS13D-213ENST00000613099 MT1FP04733 61 aa1.78□□□□□ -2.12
VPS13D-213ENST00000613099 KRTAP19-5Q3LI72 72 aa1.78□□□□□ -2.13
VPS13D-213ENST00000613099 KRTAP10-7P60409 375 aaPredicted RBP1.77□□□□□ -2.13
VPS13D-213ENST00000613099 AHNAKQ09666 5890 aaKnown RBP1.76□□□□□ -2.13
VPS13D-213ENST00000613099 KMT2DO14686 5537 aa1.76□□□□□ -2.13
VPS13D-213ENST00000613099 KRTAP4-1Q9BYQ7 146 aa1.75□□□□□ -2.13
VPS13D-213ENST00000613099 MT1HP80294 61 aa1.73□□□□□ -2.13
VPS13D-213ENST00000613099 GPR98Q8WXG9 6306 aa1.71□□□□□ -2.13
VPS13D-213ENST00000613099 MT1LQ93083 61 aa1.71□□□□□ -2.14
VPS13D-213ENST00000613099 MT1EP04732 61 aa1.7□□□□□ -2.14
VPS13D-213ENST00000613099 LCE2DQ5TA82 110 aaPredicted RBP1.7□□□□□ -2.14
VPS13D-213ENST00000613099 MUC17Q685J3 4493 aa1.69□□□□□ -2.14
VPS13D-213ENST00000613099 FAT4Q6V0I7 4981 aa1.69□□□□□ -2.14
VPS13D-213ENST00000613099 KIAA1109Q2LD37 5005 aa1.69□□□□□ -2.14
VPS13D-213ENST00000613099 SPRR2AP35326 72 aa1.69□□□□□ -2.14
VPS13D-213ENST00000613099 NEBP20929 6669 aa1.69□□□□□ -2.14
VPS13D-213ENST00000613099 LCE2BO14633 110 aa1.69□□□□□ -2.14
VPS13D-213ENST00000613099 HMCN1Q96RW7 5635 aa1.68□□□□□ -2.14
VPS13D-213ENST00000613099 SPRR2BP35325 72 aa1.67□□□□□ -2.14
VPS13D-213ENST00000613099 LCE3EQ5T5B0 92 aa1.67□□□□□ -2.14
VPS13D-213ENST00000613099 KRTAP2-3P0C7H8 128 aa1.67□□□□□ -2.14
VPS13D-213ENST00000613099 KRTAP2-4Q9BYR9 128 aa1.67□□□□□ -2.14
VPS13D-213ENST00000613099 KRTAP2-1Q9BYU5 128 aa1.67□□□□□ -2.14
VPS13D-213ENST00000613099 MT2AP02795 61 aa1.65□□□□□ -2.14
VPS13D-213ENST00000613099 KRTAP19-6Q3LI70 58 aa1.65□□□□□ -2.15
VPS13D-213ENST00000613099 KRTAP9-2Q9BYQ4 174 aa1.65□□□□□ -2.15
VPS13D-213ENST00000613099 LCE3DQ9BYE3 92 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms