RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 PRO0461Q9UI25 63 aa3.43□□□□□ -1.86
CUX1-219ENST00000606749 Q5VV11 94 aa3.42□□□□□ -1.86
CUX1-219ENST00000606749 KRTAP4-11Q9BYQ6 195 aa3.42□□□□□ -1.86
CUX1-219ENST00000606749 TP53AIP1Q9HCN2 124 aa3.41□□□□□ -1.86
CUX1-219ENST00000606749 COL5A1-AS1Q5SY13 56 aa3.39□□□□□ -1.87
CUX1-219ENST00000606749 K7EP34 96 aa3.38□□□□□ -1.87
CUX1-219ENST00000606749 KRTAP10-5P60370 271 aa3.38□□□□□ -1.87
CUX1-219ENST00000606749 KLKP1Q107X0 134 aa3.38□□□□□ -1.87
CUX1-219ENST00000606749 CYP4F30PQ9H0H9 118 aa3.37□□□□□ -1.87
CUX1-219ENST00000606749 A0A087WVE0 104 aa3.35□□□□□ -1.87
CUX1-219ENST00000606749 NEBP20929 6669 aa3.33□□□□□ -1.88
CUX1-219ENST00000606749 F8W1H4 67 aa3.33□□□□□ -1.88
CUX1-219ENST00000606749 ETDBQ3ZM63 59 aa3.33□□□□□ -1.88
CUX1-219ENST00000606749 CRIPTQ9P021 101 aa3.33□□□□□ -1.88
CUX1-219ENST00000606749 GTF2H5Q6ZYL4 71 aa3.32□□□□□ -1.88
CUX1-219ENST00000606749 TRAV22A0A0B4J277 110 aa3.31□□□□□ -1.88
CUX1-219ENST00000606749 KRTAP5-9P26371 169 aa3.31□□□□□ -1.88
CUX1-219ENST00000606749 IMUPQ9GZP8 106 aa3.31□□□□□ -1.88
CUX1-219ENST00000606749 LOC101927531A0A1B0GV80 90 aa3.3□□□□□ -1.88
CUX1-219ENST00000606749 LCE4AQ5TA78 99 aa3.29□□□□□ -1.88
CUX1-219ENST00000606749 NDUFC1O43677 76 aa3.28□□□□□ -1.88
CUX1-219ENST00000606749 KRTAP20-1Q3LI63 56 aa3.28□□□□□ -1.88
CUX1-219ENST00000606749 MUC12Q9UKN1 5478 aa3.28□□□□□ -1.88
CUX1-219ENST00000606749 H0YAA0 97 aa3.27□□□□□ -1.89
CUX1-219ENST00000606749 UQCRQO14949 82 aa3.27□□□□□ -1.89
CUX1-219ENST00000606749 ACYP1P07311 99 aa3.26□□□□□ -1.89
CUX1-219ENST00000606749 H0Y9P7 68 aa3.25□□□□□ -1.89
CUX1-219ENST00000606749 ATOX1O00244 68 aa3.25□□□□□ -1.89
CUX1-219ENST00000606749 HIST1H4AP62805 103 aaKnown RBP3.24□□□□□ -1.89
CUX1-219ENST00000606749 ADM2Q7Z4H4 148 aa3.24□□□□□ -1.89
CUX1-219ENST00000606749 A8MUN3 132 aa3.23□□□□□ -1.89
CUX1-219ENST00000606749 ATP5EP2Q5VTU8 51 aa3.23□□□□□ -1.89
CUX1-219ENST00000606749 FAM240AA0A1B0GVK7 77 aa3.22□□□□□ -1.89
CUX1-219ENST00000606749 PCP4L1A6NKN8 68 aa3.22□□□□□ -1.89
CUX1-219ENST00000606749 KMT2DO14686 5537 aa3.21□□□□□ -1.9
CUX1-219ENST00000606749 MT1XP80297 61 aa3.21□□□□□ -1.9
CUX1-219ENST00000606749 LCE5AQ5TCM9 118 aa3.21□□□□□ -1.9
CUX1-219ENST00000606749 LINC00208Q96KT6 92 aa3.2□□□□□ -1.9
CUX1-219ENST00000606749 PRO2289Q9P1D8 64 aa3.2□□□□□ -1.9
CUX1-219ENST00000606749 KRTAP23-1A1A580 65 aa3.19□□□□□ -1.9
CUX1-219ENST00000606749 SPRR2FQ96RM1 72 aa3.19□□□□□ -1.9
CUX1-219ENST00000606749 MDN1Q9NU22 5596 aa3.19□□□□□ -1.9
CUX1-219ENST00000606749 KRTAP2-3P0C7H8 128 aa3.18□□□□□ -1.9
CUX1-219ENST00000606749 PLAC4Q8WY50 150 aa3.18□□□□□ -1.9
CUX1-219ENST00000606749 KRTAP2-4Q9BYR9 128 aa3.18□□□□□ -1.9
CUX1-219ENST00000606749 LINC00643Q86TS7 51 aa3.17□□□□□ -1.9
CUX1-219ENST00000606749 P0C880 135 aa3.16□□□□□ -1.9
CUX1-219ENST00000606749 SPRR2EP22531 72 aa3.16□□□□□ -1.9
CUX1-219ENST00000606749 SPRR2BP35325 72 aa3.16□□□□□ -1.9
CUX1-219ENST00000606749 SPRR2AP35326 72 aa3.16□□□□□ -1.9
CUX1-219ENST00000606749 OCR1Q9BZK8 76 aa3.16□□□□□ -1.9
CUX1-219ENST00000606749 MP68P56378 58 aa3.15□□□□□ -1.91
CUX1-219ENST00000606749 KRTAP8-1Q8IUC2 63 aa3.15□□□□□ -1.91
CUX1-219ENST00000606749 R4GN34 69 aa3.15□□□□□ -1.91
CUX1-219ENST00000606749 KRTAP12-2P59991 146 aa3.14□□□□□ -1.91
CUX1-219ENST00000606749 C20orf197Q8N268 126 aa3.13□□□□□ -1.91
CUX1-219ENST00000606749 M0QZ58 72 aa3.12□□□□□ -1.91
CUX1-219ENST00000606749 LCE1AQ5T7P2 110 aa3.12□□□□□ -1.91
CUX1-219ENST00000606749 H3BPC8 53 aa3.11□□□□□ -1.91
CUX1-219ENST00000606749 DMAC1Q96GE9 116 aa3.1□□□□□ -1.91
CUX1-219ENST00000606749 LINC01554Q52M75 96 aa3.09□□□□□ -1.91
CUX1-219ENST00000606749 KRTAP2-2Q9BYT5 123 aa3.08□□□□□ -1.92
CUX1-219ENST00000606749 KRTAP2-1Q9BYU5 128 aa3.08□□□□□ -1.92
CUX1-219ENST00000606749 SCGB1A1P11684 91 aa3.06□□□□□ -1.92
CUX1-219ENST00000606749 SPRR2DP22532 72 aa3.06□□□□□ -1.92
CUX1-219ENST00000606749 KRTAP10-7P60409 375 aaPredicted RBP3.06□□□□□ -1.92
CUX1-219ENST00000606749 TRAV7A0A075B6U4 112 aa3.04□□□□□ -1.92
CUX1-219ENST00000606749 A0A1B0GV90 55 aa3.04□□□□□ -1.92
CUX1-219ENST00000606749 KRTAP10-12P60413 245 aa3.04□□□□□ -1.92
CUX1-219ENST00000606749 ACYP2P14621 99 aa3.03□□□□□ -1.92
CUX1-219ENST00000606749 J3QR89 54 aa3.01□□□□□ -1.93
CUX1-219ENST00000606749 MT-ATP8P03928 68 aa3□□□□□ -1.93
CUX1-219ENST00000606749 SPTSSBQ8NFR3 76 aa2.99□□□□□ -1.93
CUX1-219ENST00000606749 CHKB-CPT1BH3BT56 60 aa2.95□□□□□ -1.94
CUX1-219ENST00000606749 KRTAP15-1Q3LI76 137 aa2.94□□□□□ -1.94
CUX1-219ENST00000606749 SMIM20Q8N5G0 67 aa2.94□□□□□ -1.94
CUX1-219ENST00000606749 KRTAP13-4Q3LI77 160 aa2.91□□□□□ -1.94
CUX1-219ENST00000606749 SNURFQ9Y675 71 aa2.9□□□□□ -1.95
CUX1-219ENST00000606749 CAMK2N1Q7Z7J9 78 aa2.88□□□□□ -1.95
CUX1-219ENST00000606749 SPANXA2-OT1Q8N9U9 137 aa2.88□□□□□ -1.95
CUX1-219ENST00000606749 KRTAP19-7Q3SYF9 63 aa2.86□□□□□ -1.95
CUX1-219ENST00000606749 K7ERU9 68 aa2.84□□□□□ -1.95
CUX1-219ENST00000606749 MT1EP04732 61 aa2.84□□□□□ -1.95
CUX1-219ENST00000606749 KRTAP19-3Q7Z4W3 81 aa2.83□□□□□ -1.96
CUX1-219ENST00000606749 SERP2Q8N6R1 65 aa2.82□□□□□ -1.96
CUX1-219ENST00000606749 A0A0D9SG42 100 aa2.81□□□□□ -1.96
CUX1-219ENST00000606749 DSTQ03001 7570 aaKnown RBP2.81□□□□□ -1.96
CUX1-219ENST00000606749 COA5Q86WW8 74 aa2.8□□□□□ -1.96
CUX1-219ENST00000606749 SEC61GP60059 68 aa2.79□□□□□ -1.96
CUX1-219ENST00000606749 SPATA8Q6RVD6 105 aa2.79□□□□□ -1.96
CUX1-219ENST00000606749 SERP1Q9Y6X1 66 aa2.79□□□□□ -1.96
CUX1-219ENST00000606749 MT1GP13640 62 aa2.77□□□□□ -1.97
CUX1-219ENST00000606749 KRTAP19-5Q3LI72 72 aa2.77□□□□□ -1.97
CUX1-219ENST00000606749 SPINT4Q6UDR6 99 aa2.77□□□□□ -1.97
CUX1-219ENST00000606749 A0A1B0GU33 70 aa2.76□□□□□ -1.97
CUX1-219ENST00000606749 CYSTM1Q9H1C7 97 aa2.76□□□□□ -1.97
CUX1-219ENST00000606749 KRTAP12-1P59990 96 aa2.75□□□□□ -1.97
CUX1-219ENST00000606749 PP632Q6XCG6 107 aa2.73□□□□□ -1.97
CUX1-219ENST00000606749 GPR98Q8WXG9 6306 aa2.73□□□□□ -1.97
CUX1-219ENST00000606749 SVIPQ8NHG7 77 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 252.4 ms