RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	KRTAP20-1	Q3LI63	56 aa		7.69	□□□□□ -1.18
SHKBP1-223	ENST00000600552	ETDB	Q3ZM63	59 aa		7.65	□□□□□ -1.18
SHKBP1-223	ENST00000600552	CRIPT	Q9P021	101 aa		7.64	□□□□□ -1.19
SHKBP1-223	ENST00000600552	TRAV22	A0A0B4J277	110 aa		7.62	□□□□□ -1.19
SHKBP1-223	ENST00000600552	LOC101927531	A0A1B0GV80	90 aa		7.61	□□□□□ -1.19
SHKBP1-223	ENST00000600552	MDN1	Q9NU22	5596 aa		7.6	□□□□□ -1.19
SHKBP1-223	ENST00000600552	KRTAP5-9	P26371	169 aa		7.6	□□□□□ -1.19
SHKBP1-223	ENST00000600552	KMT2D	O14686	5537 aa		7.6	□□□□□ -1.19
SHKBP1-223	ENST00000600552	NDUFC1	O43677	76 aa		7.58	□□□□□ -1.2
SHKBP1-223	ENST00000600552		H0Y9P7	68 aa		7.53	□□□□□ -1.2
SHKBP1-223	ENST00000600552	HIST1H4A	P62805	103 aa	Known RBP	7.52	□□□□□ -1.21
SHKBP1-223	ENST00000600552	ADM2	Q7Z4H4	148 aa		7.52	□□□□□ -1.21
SHKBP1-223	ENST00000600552	UQCRQ	O14949	82 aa		7.48	□□□□□ -1.21
SHKBP1-223	ENST00000600552	ACYP1	P07311	99 aa		7.48	□□□□□ -1.21
SHKBP1-223	ENST00000600552		A8MUN3	132 aa		7.47	□□□□□ -1.21
SHKBP1-223	ENST00000600552		H0YAA0	97 aa		7.45	□□□□□ -1.22
SHKBP1-223	ENST00000600552	ATOX1	O00244	68 aa		7.45	□□□□□ -1.22
SHKBP1-223	ENST00000600552	SPRR2F	Q96RM1	72 aa		7.45	□□□□□ -1.22
SHKBP1-223	ENST00000600552	FAM240A	A0A1B0GVK7	77 aa		7.44	□□□□□ -1.22
SHKBP1-223	ENST00000600552	PLAC4	Q8WY50	150 aa		7.42	□□□□□ -1.22
SHKBP1-223	ENST00000600552	PRO2289	Q9P1D8	64 aa		7.42	□□□□□ -1.22
SHKBP1-223	ENST00000600552		J3QR89	54 aa		7.41	□□□□□ -1.22
SHKBP1-223	ENST00000600552	KRTAP2-3	P0C7H8	128 aa		7.4	□□□□□ -1.22
SHKBP1-223	ENST00000600552	SPRR2E	P22531	72 aa		7.4	□□□□□ -1.22
SHKBP1-223	ENST00000600552	SPRR2B	P35325	72 aa		7.4	□□□□□ -1.22
SHKBP1-223	ENST00000600552	SPRR2A	P35326	72 aa		7.4	□□□□□ -1.22
SHKBP1-223	ENST00000600552	KRTAP2-4	Q9BYR9	128 aa		7.4	□□□□□ -1.22
SHKBP1-223	ENST00000600552	ATP5EP2	Q5VTU8	51 aa		7.39	□□□□□ -1.23
SHKBP1-223	ENST00000600552	LINC00208	Q96KT6	92 aa		7.39	□□□□□ -1.23
SHKBP1-223	ENST00000600552	MT1X	P80297	61 aa		7.38	□□□□□ -1.23
SHKBP1-223	ENST00000600552	KRTAP8-1	Q8IUC2	63 aa		7.34	□□□□□ -1.23
SHKBP1-223	ENST00000600552		R4GN34	69 aa		7.33	□□□□□ -1.24
SHKBP1-223	ENST00000600552		K7ERU9	68 aa		7.32	□□□□□ -1.24
SHKBP1-223	ENST00000600552	MP68	P56378	58 aa		7.3	□□□□□ -1.24
SHKBP1-223	ENST00000600552		P0C880	135 aa		7.29	□□□□□ -1.24
SHKBP1-223	ENST00000600552		M0QZ58	72 aa		7.28	□□□□□ -1.24
SHKBP1-223	ENST00000600552	LINC00643	Q86TS7	51 aa		7.28	□□□□□ -1.24
SHKBP1-223	ENST00000600552	LINC01554	Q52M75	96 aa		7.26	□□□□□ -1.25
SHKBP1-223	ENST00000600552	C20orf197	Q8N268	126 aa		7.24	□□□□□ -1.25
SHKBP1-223	ENST00000600552	LCE1A	Q5T7P2	110 aa		7.2	□□□□□ -1.26
SHKBP1-223	ENST00000600552	OCR1	Q9BZK8	76 aa		7.2	□□□□□ -1.26
SHKBP1-223	ENST00000600552	KRTAP4-8	A0A0G2JLE6	195 aa		7.19	□□□□□ -1.26
SHKBP1-223	ENST00000600552	KRTAP4-8	Q9BYQ9	185 aa		7.19	□□□□□ -1.26
SHKBP1-223	ENST00000600552	KRTAP12-2	P59991	146 aa		7.18	□□□□□ -1.26
SHKBP1-223	ENST00000600552	SPRR2D	P22532	72 aa		7.16	□□□□□ -1.26
SHKBP1-223	ENST00000600552	KRTAP2-2	Q9BYT5	123 aa		7.14	□□□□□ -1.27
SHKBP1-223	ENST00000600552	KRTAP2-1	Q9BYU5	128 aa		7.14	□□□□□ -1.27
SHKBP1-223	ENST00000600552	MT-ATP8	P03928	68 aa		7.13	□□□□□ -1.27
SHKBP1-223	ENST00000600552	KRTAP3-2	Q9BYR7	98 aa		7.13	□□□□□ -1.27
SHKBP1-223	ENST00000600552	DMAC1	Q96GE9	116 aa		7.1	□□□□□ -1.27
SHKBP1-223	ENST00000600552		H3BPC8	53 aa		7.07	□□□□□ -1.28
SHKBP1-223	ENST00000600552	SCGB1A1	P11684	91 aa		7.07	□□□□□ -1.28
SHKBP1-223	ENST00000600552	KRTAP10-7	P60409	375 aa	Predicted RBP	7.07	□□□□□ -1.28
SHKBP1-223	ENST00000600552	KRTAP10-12	P60413	245 aa		6.97	□□□□□ -1.29
SHKBP1-223	ENST00000600552	LCE3B	Q5TA77	95 aa		6.96	□□□□□ -1.3
SHKBP1-223	ENST00000600552	TRAV7	A0A075B6U4	112 aa		6.95	□□□□□ -1.3
SHKBP1-223	ENST00000600552	ACYP2	P14621	99 aa		6.94	□□□□□ -1.3
SHKBP1-223	ENST00000600552	SPTSSB	Q8NFR3	76 aa		6.91	□□□□□ -1.3
SHKBP1-223	ENST00000600552	CHKB-CPT1B	H3BT56	60 aa		6.88	□□□□□ -1.31
SHKBP1-223	ENST00000600552	SMIM20	Q8N5G0	67 aa		6.86	□□□□□ -1.31
SHKBP1-223	ENST00000600552	SERP2	Q8N6R1	65 aa		6.77	□□□□□ -1.33
SHKBP1-223	ENST00000600552	CAMK2N1	Q7Z7J9	78 aa		6.75	□□□□□ -1.33
SHKBP1-223	ENST00000600552	SNURF	Q9Y675	71 aa		6.72	□□□□□ -1.33
SHKBP1-223	ENST00000600552	KRTAP13-4	Q3LI77	160 aa		6.7	□□□□□ -1.34
SHKBP1-223	ENST00000600552	ANAPC13	Q9BS18	74 aa		6.69	□□□□□ -1.34
SHKBP1-223	ENST00000600552	COX7C	P15954	63 aa		6.68	□□□□□ -1.34
SHKBP1-223	ENST00000600552	GPR98	Q8WXG9	6306 aa		6.67	□□□□□ -1.34
SHKBP1-223	ENST00000600552	DST	Q03001	7570 aa	Known RBP	6.59	□□□□□ -1.35
SHKBP1-223	ENST00000600552	KRTAP4-9	Q9BYQ8	210 aa		6.59	□□□□□ -1.35
SHKBP1-223	ENST00000600552		A0A0D9SG42	100 aa		6.58	□□□□□ -1.36
SHKBP1-223	ENST00000600552	KRTAP19-7	Q3SYF9	63 aa		6.58	□□□□□ -1.36
SHKBP1-223	ENST00000600552	LCE5A	Q5TCM9	118 aa		6.56	□□□□□ -1.36
SHKBP1-223	ENST00000600552	MT1E	P04732	61 aa		6.55	□□□□□ -1.36
SHKBP1-223	ENST00000600552	KRTAP19-3	Q7Z4W3	81 aa		6.54	□□□□□ -1.36
SHKBP1-223	ENST00000600552	CCDC179	H3BU77	68 aa		6.53	□□□□□ -1.36
SHKBP1-223	ENST00000600552	SPANXA2-OT1	Q8N9U9	137 aa		6.53	□□□□□ -1.36
SHKBP1-223	ENST00000600552	CYSTM1	Q9H1C7	97 aa		6.53	□□□□□ -1.36
SHKBP1-223	ENST00000600552	SPINT4	Q6UDR6	99 aa		6.49	□□□□□ -1.37
SHKBP1-223	ENST00000600552		H7BZZ5	65 aa		6.48	□□□□□ -1.37
SHKBP1-223	ENST00000600552	SEC61G	P60059	68 aa		6.47	□□□□□ -1.37
SHKBP1-223	ENST00000600552	SERP1	Q9Y6X1	66 aa		6.47	□□□□□ -1.37
SHKBP1-223	ENST00000600552	SPATA8	Q6RVD6	105 aa		6.46	□□□□□ -1.38
SHKBP1-223	ENST00000600552	COA5	Q86WW8	74 aa		6.46	□□□□□ -1.38
SHKBP1-223	ENST00000600552	KRTAP19-5	Q3LI72	72 aa		6.42	□□□□□ -1.38
SHKBP1-223	ENST00000600552		A0A1B0GU33	70 aa		6.36	□□□□□ -1.39
SHKBP1-223	ENST00000600552	MT1G	P13640	62 aa		6.35	□□□□□ -1.39
SHKBP1-223	ENST00000600552	LCE1D	Q5T752	114 aa		6.35	□□□□□ -1.39
SHKBP1-223	ENST00000600552	MT4	P47944	62 aa		6.32	□□□□□ -1.4
SHKBP1-223	ENST00000600552	ATP5E	P56381	51 aa	Predicted RBP	6.32	□□□□□ -1.4
SHKBP1-223	ENST00000600552	PP632	Q6XCG6	107 aa		6.32	□□□□□ -1.4
SHKBP1-223	ENST00000600552	PCP4	P48539	62 aa		6.31	□□□□□ -1.4
SHKBP1-223	ENST00000600552	KRTAP12-1	P59990	96 aa		6.31	□□□□□ -1.4
SHKBP1-223	ENST00000600552	TMEM258	P61165	79 aa		6.31	□□□□□ -1.4
SHKBP1-223	ENST00000600552	MT1M	Q8N339	61 aa		6.27	□□□□□ -1.41
SHKBP1-223	ENST00000600552	HMCN1	Q96RW7	5635 aa		6.24	□□□□□ -1.41
SHKBP1-223	ENST00000600552	LCE4A	Q5TA78	99 aa		6.23	□□□□□ -1.41
SHKBP1-223	ENST00000600552	MT1L	Q93083	61 aa		6.22	□□□□□ -1.41
SHKBP1-223	ENST00000600552	KRTAP4-3	Q9BYR4	195 aa		6.2	□□□□□ -1.42
SHKBP1-223	ENST00000600552		A8MU10	97 aa		6.18	□□□□□ -1.42
SHKBP1-223	ENST00000600552	AHNAK2	Q8IVF2	5795 aa		6.17	□□□□□ -1.42

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