RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 C5orf47Q569G3 176 aa3.91□□□□□ -1.78
SHKBP1-220ENST00000599716 Q5W150 140 aa3.91□□□□□ -1.78
SHKBP1-220ENST00000599716 FAM236AA0A1B0GUQ0 79 aa3.9□□□□□ -1.79
SHKBP1-220ENST00000599716 FAM236BA0A1B0GV22 79 aa3.9□□□□□ -1.79
SHKBP1-220ENST00000599716 PRR15Q8IV56 129 aa3.9□□□□□ -1.79
SHKBP1-220ENST00000599716 MRPL34Q9BQ48 92 aaKnown RBP3.9□□□□□ -1.79
SHKBP1-220ENST00000599716 AHNAK2Q8IVF2 5795 aa3.9□□□□□ -1.79
SHKBP1-220ENST00000599716 MT-ATP8P03928 68 aa3.89□□□□□ -1.79
SHKBP1-220ENST00000599716 C4orf26Q17RF5 130 aa3.89□□□□□ -1.79
SHKBP1-220ENST00000599716 FAM240AA0A1B0GVK7 77 aa3.88□□□□□ -1.79
SHKBP1-220ENST00000599716 Q5VV11 94 aa3.88□□□□□ -1.79
SHKBP1-220ENST00000599716 TMEM254Q8TBM7 123 aa3.88□□□□□ -1.79
SHKBP1-220ENST00000599716 C14orf132Q9NPU4 83 aa3.88□□□□□ -1.79
SHKBP1-220ENST00000599716 K7EQZ3 153 aa3.87□□□□□ -1.79
SHKBP1-220ENST00000599716 ATXN8Q156A1 80 aa3.87□□□□□ -1.79
SHKBP1-220ENST00000599716 IMUPQ9GZP8 106 aa3.87□□□□□ -1.79
SHKBP1-220ENST00000599716 hDV103S1A0JD37 113 aa3.86□□□□□ -1.79
SHKBP1-220ENST00000599716 H3BT86 120 aa3.86□□□□□ -1.79
SHKBP1-220ENST00000599716 ACYP1P07311 99 aa3.86□□□□□ -1.79
SHKBP1-220ENST00000599716 KRTAP10-5P60370 271 aa3.86□□□□□ -1.79
SHKBP1-220ENST00000599716 LOC110117498A0A087WWA1 95 aa3.85□□□□□ -1.79
SHKBP1-220ENST00000599716 NREPQ16612 68 aa3.85□□□□□ -1.79
SHKBP1-220ENST00000599716 KRTAP19-8Q3LI54 63 aa3.85□□□□□ -1.79
SHKBP1-220ENST00000599716 C7orf65Q6ZTY9 151 aa3.85□□□□□ -1.79
SHKBP1-220ENST00000599716 SMIM20Q8N5G0 67 aa3.84□□□□□ -1.79
SHKBP1-220ENST00000599716 KRTAP3-1Q9BYR8 98 aa3.84□□□□□ -1.79
SHKBP1-220ENST00000599716 HMCN1Q96RW7 5635 aa3.83□□□□□ -1.8
SHKBP1-220ENST00000599716 Q8N9L7 120 aa3.83□□□□□ -1.8
SHKBP1-220ENST00000599716 SPRR2GQ9BYE4 73 aa3.83□□□□□ -1.8
SHKBP1-220ENST00000599716 JMJD7-PLA2G4BH0Y9G9 81 aa3.82□□□□□ -1.8
SHKBP1-220ENST00000599716 UQCRQO14949 82 aa3.81□□□□□ -1.8
SHKBP1-220ENST00000599716 SPRR2FQ96RM1 72 aa3.81□□□□□ -1.8
SHKBP1-220ENST00000599716 HCG22E2RYF7 251 aa3.8□□□□□ -1.8
SHKBP1-220ENST00000599716 CCDC179H3BU77 68 aa3.8□□□□□ -1.8
SHKBP1-220ENST00000599716 SPRR2DP22532 72 aa3.8□□□□□ -1.8
SHKBP1-220ENST00000599716 RPS28P62857 69 aaKnown RBP3.8□□□□□ -1.8
SHKBP1-220ENST00000599716 LCA10Q71F78 164 aa3.8□□□□□ -1.8
SHKBP1-220ENST00000599716 S4R3F8 94 aa3.8□□□□□ -1.8
SHKBP1-220ENST00000599716 A0A1B0GW54 56 aa3.79□□□□□ -1.8
SHKBP1-220ENST00000599716 LINC00643Q86TS7 51 aa3.79□□□□□ -1.8
SHKBP1-220ENST00000599716 BPY2O14599 106 aa3.78□□□□□ -1.8
SHKBP1-220ENST00000599716 PDE6GP18545 87 aa3.78□□□□□ -1.8
SHKBP1-220ENST00000599716 LCE1AQ5T7P2 110 aa3.78□□□□□ -1.8
SHKBP1-220ENST00000599716 ATOX1O00244 68 aa3.77□□□□□ -1.81
SHKBP1-220ENST00000599716 COX7CP15954 63 aa3.76□□□□□ -1.81
SHKBP1-220ENST00000599716 TMEM258P61165 79 aa3.76□□□□□ -1.81
SHKBP1-220ENST00000599716 KLKP1Q107X0 134 aa3.76□□□□□ -1.81
SHKBP1-220ENST00000599716 CSAG1Q6PB30 78 aa3.76□□□□□ -1.81
SHKBP1-220ENST00000599716 CASC2Q6XLA1 102 aa3.76□□□□□ -1.81
SHKBP1-220ENST00000599716 C1orf64Q8NEQ6 169 aa3.75□□□□□ -1.81
SHKBP1-220ENST00000599716 A0A087WVE0 104 aa3.73□□□□□ -1.81
SHKBP1-220ENST00000599716 HIST1H4AP62805 103 aaKnown RBP3.72□□□□□ -1.81
SHKBP1-220ENST00000599716 CXCL6P80162 114 aa3.71□□□□□ -1.82
SHKBP1-220ENST00000599716 ATP5EP2Q5VTU8 51 aa3.71□□□□□ -1.82
SHKBP1-220ENST00000599716 SERP2Q8N6R1 65 aa3.7□□□□□ -1.82
SHKBP1-220ENST00000599716 ATP5EP56381 51 aaPredicted RBP3.66□□□□□ -1.82
SHKBP1-220ENST00000599716 KRTAP5-10Q6L8G5 202 aa3.65□□□□□ -1.83
SHKBP1-220ENST00000599716 SERP1Q9Y6X1 66 aa3.65□□□□□ -1.83
SHKBP1-220ENST00000599716 MT1XP80297 61 aa3.64□□□□□ -1.83
SHKBP1-220ENST00000599716 PRO0628Q9UI54 55 aa3.64□□□□□ -1.83
SHKBP1-220ENST00000599716 NDUFC1O43677 76 aa3.63□□□□□ -1.83
SHKBP1-220ENST00000599716 KRTAP8-1Q8IUC2 63 aa3.63□□□□□ -1.83
SHKBP1-220ENST00000599716 CRIPTQ9P021 101 aa3.61□□□□□ -1.83
SHKBP1-220ENST00000599716 TRAV7A0A075B6U4 112 aa3.6□□□□□ -1.83
SHKBP1-220ENST00000599716 SMIM26A0A096LP01 95 aa3.6□□□□□ -1.83
SHKBP1-220ENST00000599716 KRTAP5-7Q6L8G8 165 aa3.6□□□□□ -1.83
SHKBP1-220ENST00000599716 UBL5Q9BZL1 73 aa3.59□□□□□ -1.83
SHKBP1-220ENST00000599716 CYP4F30PQ9H0H9 118 aa3.59□□□□□ -1.83
SHKBP1-220ENST00000599716 ADM2Q7Z4H4 148 aa3.58□□□□□ -1.84
SHKBP1-220ENST00000599716 A8MUN3 132 aa3.56□□□□□ -1.84
SHKBP1-220ENST00000599716 PRO2289Q9P1D8 64 aa3.56□□□□□ -1.84
SHKBP1-220ENST00000599716 AHNAKQ09666 5890 aaKnown RBP3.55□□□□□ -1.84
SHKBP1-220ENST00000599716 SPRR5A0A1B0GTR4 108 aa3.54□□□□□ -1.84
SHKBP1-220ENST00000599716 C20orf197Q8N268 126 aa3.54□□□□□ -1.84
SHKBP1-220ENST00000599716 TP53AIP1Q9HCN2 124 aa3.54□□□□□ -1.84
SHKBP1-220ENST00000599716 H7BZZ5 65 aa3.53□□□□□ -1.84
SHKBP1-220ENST00000599716 PLAC4Q8WY50 150 aa3.53□□□□□ -1.84
SHKBP1-220ENST00000599716 KRTAP12-2P59991 146 aa3.52□□□□□ -1.85
SHKBP1-220ENST00000599716 CYSTM1Q9H1C7 97 aa3.52□□□□□ -1.85
SHKBP1-220ENST00000599716 V9GYY9 64 aa3.52□□□□□ -1.85
SHKBP1-220ENST00000599716 H0YAA0 97 aa3.51□□□□□ -1.85
SHKBP1-220ENST00000599716 KRTAP10-7P60409 375 aaPredicted RBP3.51□□□□□ -1.85
SHKBP1-220ENST00000599716 TRAV22A0A0B4J277 110 aa3.5□□□□□ -1.85
SHKBP1-220ENST00000599716 P0C880 135 aa3.49□□□□□ -1.85
SHKBP1-220ENST00000599716 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.49□□□□□ -1.85
SHKBP1-220ENST00000599716 LOC101927531A0A1B0GV80 90 aa3.48□□□□□ -1.85
SHKBP1-220ENST00000599716 KRTAP15-1Q3LI76 137 aa3.48□□□□□ -1.85
SHKBP1-220ENST00000599716 SEC61GP60059 68 aa3.47□□□□□ -1.85
SHKBP1-220ENST00000599716 BRK1Q8WUW1 75 aa3.47□□□□□ -1.85
SHKBP1-220ENST00000599716 LINC01554Q52M75 96 aa3.46□□□□□ -1.86
SHKBP1-220ENST00000599716 R4GN34 69 aa3.46□□□□□ -1.86
SHKBP1-220ENST00000599716 M0QZ58 72 aa3.45□□□□□ -1.86
SHKBP1-220ENST00000599716 H0Y9P7 68 aa3.44□□□□□ -1.86
SHKBP1-220ENST00000599716 SNURFQ9Y675 71 aa3.43□□□□□ -1.86
SHKBP1-220ENST00000599716 KRTAP10-12P60413 245 aa3.42□□□□□ -1.86
SHKBP1-220ENST00000599716 Q1T7F1 81 aa3.42□□□□□ -1.86
SHKBP1-220ENST00000599716 PMAIP1Q13794 54 aa3.4□□□□□ -1.87
SHKBP1-220ENST00000599716 OCR1Q9BZK8 76 aa3.4□□□□□ -1.87
SHKBP1-220ENST00000599716 LINC00208Q96KT6 92 aa3.38□□□□□ -1.87
SHKBP1-220ENST00000599716 H3BPC8 53 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 97.2 ms