RNA–Protein interactions for RNA: ENST00000597928.5

USHBP1-207, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 3,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-207ENST00000597928 XP32Q5T750 250 aa6.43□□□□□ -1.38
USHBP1-207ENST00000597928 J3QL48 77 aa6.43□□□□□ -1.38
USHBP1-207ENST00000597928 C10orf95Q9H7T3 257 aa6.42□□□□□ -1.38
USHBP1-207ENST00000597928 P0C880 135 aa6.42□□□□□ -1.38
USHBP1-207ENST00000597928 RPL37P61927 97 aaKnown RBP6.42□□□□□ -1.38
USHBP1-207ENST00000597928 APOBP04114 4563 aaKnown RBP6.41□□□□□ -1.38
USHBP1-207ENST00000597928 KMT2CQ8NEZ4 4911 aaKnown RBP6.4□□□□□ -1.38
USHBP1-207ENST00000597928 SACSQ9NZJ4 4579 aa6.4□□□□□ -1.39
USHBP1-207ENST00000597928 KIAA1109Q2LD37 5005 aa6.38□□□□□ -1.39
USHBP1-207ENST00000597928 PKD1P98161 4303 aa6.37□□□□□ -1.39
USHBP1-207ENST00000597928 KRTAP10-4P60372 401 aaPredicted RBP6.36□□□□□ -1.39
USHBP1-207ENST00000597928 KRTAP25-1Q3LHN0 102 aa6.36□□□□□ -1.39
USHBP1-207ENST00000597928 ROMO1P60602 79 aa6.34□□□□□ -1.39
USHBP1-207ENST00000597928 KRTAP13-4Q3LI77 160 aa6.32□□□□□ -1.4
USHBP1-207ENST00000597928 M0QZ58 72 aa6.3□□□□□ -1.4
USHBP1-207ENST00000597928 RYR1P21817 5038 aa6.3□□□□□ -1.4
USHBP1-207ENST00000597928 R4GN34 69 aa6.28□□□□□ -1.4
USHBP1-207ENST00000597928 RYR3Q15413 4870 aa6.24□□□□□ -1.41
USHBP1-207ENST00000597928 KRTAP10-6P60371 365 aaPredicted RBP6.21□□□□□ -1.41
USHBP1-207ENST00000597928 KRTAP21-3Q3LHN1 58 aa6.2□□□□□ -1.42
USHBP1-207ENST00000597928 KRTAP3-3Q9BYR6 98 aa6.2□□□□□ -1.42
USHBP1-207ENST00000597928 KRTAP17-1Q9BYP8 105 aa6.19□□□□□ -1.42
USHBP1-207ENST00000597928 KRTAP4-5Q9BYR2 181 aa6.19□□□□□ -1.42
USHBP1-207ENST00000597928 KRTAP12-2P59991 146 aa6.18□□□□□ -1.42
USHBP1-207ENST00000597928 LRP2P98164 4655 aa6.18□□□□□ -1.42
USHBP1-207ENST00000597928 HSPG2P98160 4391 aa6.17□□□□□ -1.42
USHBP1-207ENST00000597928 RYR2Q92736 4967 aa6.15□□□□□ -1.42
USHBP1-207ENST00000597928 CAMK2N1Q7Z7J9 78 aa6.14□□□□□ -1.43
USHBP1-207ENST00000597928 MT1HL1P0DM35 61 aa6.12□□□□□ -1.43
USHBP1-207ENST00000597928 KRTAP3-2Q9BYR7 98 aa6.11□□□□□ -1.43
USHBP1-207ENST00000597928 TPRXLQ17RH7 258 aa6.11□□□□□ -1.43
USHBP1-207ENST00000597928 SEC61BP60468 96 aaKnown RBP6.08□□□□□ -1.44
USHBP1-207ENST00000597928 LPAP08519 4548 aa6.08□□□□□ -1.44
USHBP1-207ENST00000597928 NDUFAF8A1L188 74 aa6.06□□□□□ -1.44
USHBP1-207ENST00000597928 PKHD1L1Q86WI1 4243 aa6.03□□□□□ -1.44
USHBP1-207ENST00000597928 M0R2T5 61 aa6.02□□□□□ -1.45
USHBP1-207ENST00000597928 KRTAP12-1P59990 96 aa6.02□□□□□ -1.45
USHBP1-207ENST00000597928 EPPK1P58107 5090 aaKnown RBP5.99□□□□□ -1.45
USHBP1-207ENST00000597928 LUZP6Q538Z0 58 aa5.94□□□□□ -1.46
USHBP1-207ENST00000597928 LORP23490 312 aaPredicted RBP5.93□□□□□ -1.46
USHBP1-207ENST00000597928 ABCA13Q86UQ4 5058 aa5.93□□□□□ -1.46
USHBP1-207ENST00000597928 MUC2Q02817 5179 aa5.92□□□□□ -1.46
USHBP1-207ENST00000597928 TNXBP22105 4242 aa5.86□□□□□ -1.47
USHBP1-207ENST00000597928 KRTAP4-1Q9BYQ7 146 aa5.83□□□□□ -1.48
USHBP1-207ENST00000597928 HERC2O95714 4834 aa5.79□□□□□ -1.48
USHBP1-207ENST00000597928 PLAC4Q8WY50 150 aa5.71□□□□□ -1.5
USHBP1-207ENST00000597928 KRTAP15-1Q3LI76 137 aa5.69□□□□□ -1.5
USHBP1-207ENST00000597928 RNF213Q63HN8 5207 aa5.64□□□□□ -1.51
USHBP1-207ENST00000597928 FAT4Q6V0I7 4981 aa5.62□□□□□ -1.51
USHBP1-207ENST00000597928 HERC1Q15751 4861 aa5.62□□□□□ -1.51
USHBP1-207ENST00000597928 TNP1P09430 55 aa5.6□□□□□ -1.51
USHBP1-207ENST00000597928 KRTAP10-10P60014 251 aa5.58□□□□□ -1.52
USHBP1-207ENST00000597928 LCE2DQ5TA82 110 aaPredicted RBP5.46□□□□□ -1.54
USHBP1-207ENST00000597928 PCLOQ9Y6V0 5065 aa5.42□□□□□ -1.54
USHBP1-207ENST00000597928 UBR4Q5T4S7 5183 aa5.42□□□□□ -1.54
USHBP1-207ENST00000597928 PP632Q6XCG6 107 aa5.39□□□□□ -1.55
USHBP1-207ENST00000597928 MUC17Q685J3 4493 aa5.32□□□□□ -1.56
USHBP1-207ENST00000597928 HMCN2Q8NDA2 5059 aa5.29□□□□□ -1.56
USHBP1-207ENST00000597928 BIRC6Q9NR09 4857 aa5.26□□□□□ -1.57
USHBP1-207ENST00000597928 KRTAP19-2Q3LHN2 52 aa5.24□□□□□ -1.57
USHBP1-207ENST00000597928 LCE3AQ5TA76 89 aa5.22□□□□□ -1.57
USHBP1-207ENST00000597928 FLGP20930 4061 aaPredicted RBP5.19□□□□□ -1.58
USHBP1-207ENST00000597928 FSIP2Q5CZC0 6907 aa5.18□□□□□ -1.58
USHBP1-207ENST00000597928 MT1HP80294 61 aa5.17□□□□□ -1.58
USHBP1-207ENST00000597928 MT1FP04733 61 aa5.16□□□□□ -1.58
USHBP1-207ENST00000597928 MT2AP02795 61 aa5.12□□□□□ -1.59
USHBP1-207ENST00000597928 KRTAP19-1Q8IUB9 90 aa5.12□□□□□ -1.59
USHBP1-207ENST00000597928 LCE2CQ5TA81 110 aa5.11□□□□□ -1.59
USHBP1-207ENST00000597928 USH2AO75445 5202 aa5.07□□□□□ -1.6
USHBP1-207ENST00000597928 SPRR2GQ9BYE4 73 aa5.03□□□□□ -1.6
USHBP1-207ENST00000597928 KRTAP10-12P60413 245 aa5□□□□□ -1.61
USHBP1-207ENST00000597928 KRTAP12-3P60328 96 aa4.96□□□□□ -1.62
USHBP1-207ENST00000597928 KMT2DO14686 5537 aa4.96□□□□□ -1.62
USHBP1-207ENST00000597928 KRTAP9-8Q9BYQ0 159 aa4.93□□□□□ -1.62
USHBP1-207ENST00000597928 PRO2289Q9P1D8 64 aa4.93□□□□□ -1.62
USHBP1-207ENST00000597928 LCE2BO14633 110 aa4.93□□□□□ -1.62
USHBP1-207ENST00000597928 KRTAP10-7P60409 375 aaPredicted RBP4.9□□□□□ -1.62
USHBP1-207ENST00000597928 MT1BP07438 61 aa4.85□□□□□ -1.63
USHBP1-207ENST00000597928 MT1XP80297 61 aa4.84□□□□□ -1.63
USHBP1-207ENST00000597928 KRTAP10-5P60370 271 aa4.83□□□□□ -1.64
USHBP1-207ENST00000597928 LCE2AQ5TA79 106 aaPredicted RBP4.81□□□□□ -1.64
USHBP1-207ENST00000597928 KRTAP4-8A0A0G2JLE6 195 aa4.78□□□□□ -1.64
USHBP1-207ENST00000597928 KRTAP23-1A1A580 65 aa4.78□□□□□ -1.64
USHBP1-207ENST00000597928 KRTAP4-8Q9BYQ9 185 aa4.78□□□□□ -1.64
USHBP1-207ENST00000597928 KRTAP19-5Q3LI72 72 aa4.74□□□□□ -1.65
USHBP1-207ENST00000597928 CRCT1Q9UGL9 99 aa4.74□□□□□ -1.65
USHBP1-207ENST00000597928 KRTAP8-1Q8IUC2 63 aa4.73□□□□□ -1.65
USHBP1-207ENST00000597928 KRTAP19-8Q3LI54 63 aa4.71□□□□□ -1.65
USHBP1-207ENST00000597928 SPRR5A0A1B0GTR4 108 aa4.71□□□□□ -1.66
USHBP1-207ENST00000597928 KRTAP9-3Q9BYQ3 159 aa4.7□□□□□ -1.66
USHBP1-207ENST00000597928 OBSCNQ5VST9 7968 aa4.68□□□□□ -1.66
USHBP1-207ENST00000597928 DSTQ03001 7570 aaKnown RBP4.66□□□□□ -1.66
USHBP1-207ENST00000597928 KRTAP4-7Q9BYR0 210 aa4.63□□□□□ -1.67
USHBP1-207ENST00000597928 SYNE1Q8NF91 8797 aaKnown RBP4.56□□□□□ -1.68
USHBP1-207ENST00000597928 FCGBPQ9Y6R7 5405 aaPredicted RBP4.53□□□□□ -1.68
USHBP1-207ENST00000597928 LCE3CQ5T5A8 94 aa4.52□□□□□ -1.69
USHBP1-207ENST00000597928 MUC12Q9UKN1 5478 aa4.42□□□□□ -1.7
USHBP1-207ENST00000597928 INE1O15225 51 aa4.42□□□□□ -1.7
USHBP1-207ENST00000597928 KRTAP4-3Q9BYR4 195 aa4.33□□□□□ -1.72
USHBP1-207ENST00000597928 KRTAP9-6A8MVA2 160 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms