RNA–Protein interactions for RNA: ENST00000594661.5

PNKP-204, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 2

Gene PNKP, Length 2,111 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-204ENST00000594661 FAT3Q8TDW7 4589 aa8.43□□□□□ -1.06
PNKP-204ENST00000594661 Q8N1X5 172 aa8.39□□□□□ -1.07
PNKP-204ENST00000594661 KRTAP10-8P60410 259 aa8.38□□□□□ -1.07
PNKP-204ENST00000594661 BIRC6Q9NR09 4857 aa8.37□□□□□ -1.07
PNKP-204ENST00000594661 FLG2Q5D862 2391 aaPredicted RBP8.37□□□□□ -1.07
PNKP-204ENST00000594661 MYCBP2O75592 4640 aa8.35□□□□□ -1.07
PNKP-204ENST00000594661 A0A1B0GU33 70 aa8.32□□□□□ -1.08
PNKP-204ENST00000594661 C9orf92A6NGG3 77 aa8.3□□□□□ -1.08
PNKP-204ENST00000594661 CRIPTQ9P021 101 aa8.29□□□□□ -1.08
PNKP-204ENST00000594661 H1FX-AS1Q4G0G2 97 aa8.29□□□□□ -1.08
PNKP-204ENST00000594661 MT1HL1P0DM35 61 aa8.26□□□□□ -1.09
PNKP-204ENST00000594661 K7ERS5 55 aa8.25□□□□□ -1.09
PNKP-204ENST00000594661 C20orf166-AS1Q96NR2 134 aa8.23□□□□□ -1.09
PNKP-204ENST00000594661 KRTAP4-5Q9BYR2 181 aa8.21□□□□□ -1.09
PNKP-204ENST00000594661 DMBT1Q9UGM3 2413 aaPredicted RBP8.21□□□□□ -1.09
PNKP-204ENST00000594661 SPINT4Q6UDR6 99 aa8.21□□□□□ -1.1
PNKP-204ENST00000594661 A0A0A0MQY5 61 aa8.2□□□□□ -1.1
PNKP-204ENST00000594661 NDUFAF8A1L188 74 aa8.2□□□□□ -1.1
PNKP-204ENST00000594661 KRTAP15-1Q3LI76 137 aa8.2□□□□□ -1.1
PNKP-204ENST00000594661 TPRXLQ17RH7 258 aa8.12□□□□□ -1.11
PNKP-204ENST00000594661 ABCA13Q86UQ4 5058 aa8.11□□□□□ -1.11
PNKP-204ENST00000594661 COX6B2Q6YFQ2 88 aa8.06□□□□□ -1.12
PNKP-204ENST00000594661 HERC2O95714 4834 aa8.05□□□□□ -1.12
PNKP-204ENST00000594661 XP32Q5T750 250 aa8.03□□□□□ -1.12
PNKP-204ENST00000594661 KRTAP3-1Q9BYR8 98 aa8□□□□□ -1.13
PNKP-204ENST00000594661 RPL37P61927 97 aaKnown RBP7.99□□□□□ -1.13
PNKP-204ENST00000594661 C10orf95Q9H7T3 257 aa7.92□□□□□ -1.14
PNKP-204ENST00000594661 LPAP08519 4548 aa7.92□□□□□ -1.14
PNKP-204ENST00000594661 LRP2P98164 4655 aa7.89□□□□□ -1.15
PNKP-204ENST00000594661 J3QL48 77 aa7.88□□□□□ -1.15
PNKP-204ENST00000594661 KRTAP13-4Q3LI77 160 aa7.81□□□□□ -1.16
PNKP-204ENST00000594661 KRTAP10-6P60371 365 aaPredicted RBP7.8□□□□□ -1.16
PNKP-204ENST00000594661 PCLOQ9Y6V0 5065 aa7.78□□□□□ -1.16
PNKP-204ENST00000594661 LUZP6Q538Z0 58 aa7.77□□□□□ -1.17
PNKP-204ENST00000594661 A0A0D9SG42 100 aa7.75□□□□□ -1.17
PNKP-204ENST00000594661 S4R3F8 94 aa7.7□□□□□ -1.18
PNKP-204ENST00000594661 KRTAP3-2Q9BYR7 98 aa7.69□□□□□ -1.18
PNKP-204ENST00000594661 HERC1Q15751 4861 aa7.65□□□□□ -1.19
PNKP-204ENST00000594661 KRTAP3-3Q9BYR6 98 aa7.63□□□□□ -1.19
PNKP-204ENST00000594661 KRTAP12-2P59991 146 aa7.61□□□□□ -1.19
PNKP-204ENST00000594661 SEC61BP60468 96 aaKnown RBP7.61□□□□□ -1.19
PNKP-204ENST00000594661 MUC17Q685J3 4493 aa7.6□□□□□ -1.19
PNKP-204ENST00000594661 HMCN2Q8NDA2 5059 aa7.56□□□□□ -1.2
PNKP-204ENST00000594661 KRTAP4-1Q9BYQ7 146 aa7.55□□□□□ -1.2
PNKP-204ENST00000594661 KRTAP12-1P59990 96 aa7.54□□□□□ -1.2
PNKP-204ENST00000594661 PLAC4Q8WY50 150 aa7.43□□□□□ -1.22
PNKP-204ENST00000594661 MUC2Q02817 5179 aa7.41□□□□□ -1.22
PNKP-204ENST00000594661 KRTAP19-2Q3LHN2 52 aa7.36□□□□□ -1.23
PNKP-204ENST00000594661 M0QZ58 72 aa7.29□□□□□ -1.24
PNKP-204ENST00000594661 FLGP20930 4061 aaPredicted RBP7.22□□□□□ -1.25
PNKP-204ENST00000594661 UBR4Q5T4S7 5183 aa7.21□□□□□ -1.25
PNKP-204ENST00000594661 RNF213Q63HN8 5207 aa7.19□□□□□ -1.26
PNKP-204ENST00000594661 LCE2CQ5TA81 110 aa7.1□□□□□ -1.27
PNKP-204ENST00000594661 FAT4Q6V0I7 4981 aa7.08□□□□□ -1.28
PNKP-204ENST00000594661 R4GN34 69 aa7.06□□□□□ -1.28
PNKP-204ENST00000594661 PP632Q6XCG6 107 aa7.04□□□□□ -1.28
PNKP-204ENST00000594661 LORP23490 312 aaPredicted RBP7.02□□□□□ -1.29
PNKP-204ENST00000594661 CAMK2N1Q7Z7J9 78 aa6.97□□□□□ -1.29
PNKP-204ENST00000594661 MT1HP80294 61 aa6.94□□□□□ -1.3
PNKP-204ENST00000594661 SPRR5A0A1B0GTR4 108 aa6.89□□□□□ -1.31
PNKP-204ENST00000594661 M0R2T5 61 aa6.88□□□□□ -1.31
PNKP-204ENST00000594661 PRO2289Q9P1D8 64 aa6.87□□□□□ -1.31
PNKP-204ENST00000594661 MT2AP02795 61 aa6.71□□□□□ -1.33
PNKP-204ENST00000594661 KRTAP9-8Q9BYQ0 159 aa6.71□□□□□ -1.34
PNKP-204ENST00000594661 MT1FP04733 61 aa6.7□□□□□ -1.34
PNKP-204ENST00000594661 KRTAP23-1A1A580 65 aa6.68□□□□□ -1.34
PNKP-204ENST00000594661 KRTAP9-6A0A140TA67 174 aa6.66□□□□□ -1.34
PNKP-204ENST00000594661 KRTAP10-10P60014 251 aa6.65□□□□□ -1.34
PNKP-204ENST00000594661 KRTAP19-1Q8IUB9 90 aa6.64□□□□□ -1.35
PNKP-204ENST00000594661 KRTAP9-2Q9BYQ4 174 aa6.64□□□□□ -1.35
PNKP-204ENST00000594661 INE1O15225 51 aa6.64□□□□□ -1.35
PNKP-204ENST00000594661 SPRR2GQ9BYE4 73 aa6.64□□□□□ -1.35
PNKP-204ENST00000594661 LCE2AQ5TA79 106 aaPredicted RBP6.52□□□□□ -1.37
PNKP-204ENST00000594661 TNP1P09430 55 aa6.5□□□□□ -1.37
PNKP-204ENST00000594661 KRTAP9-3Q9BYQ3 159 aa6.46□□□□□ -1.38
PNKP-204ENST00000594661 KRTAP19-8Q3LI54 63 aa6.43□□□□□ -1.38
PNKP-204ENST00000594661 MT1BP07438 61 aa6.37□□□□□ -1.39
PNKP-204ENST00000594661 LCE2BO14633 110 aa6.27□□□□□ -1.41
PNKP-204ENST00000594661 MT1XP80297 61 aa6.21□□□□□ -1.42
PNKP-204ENST00000594661 KRTAP10-5P60370 271 aa6.2□□□□□ -1.42
PNKP-204ENST00000594661 CRCT1Q9UGL9 99 aa6.18□□□□□ -1.42
PNKP-204ENST00000594661 USH2AO75445 5202 aa6.14□□□□□ -1.43
PNKP-204ENST00000594661 LCE2DQ5TA82 110 aaPredicted RBP6.11□□□□□ -1.43
PNKP-204ENST00000594661 LCE3AQ5TA76 89 aa6.07□□□□□ -1.44
PNKP-204ENST00000594661 KRTAP10-7P60409 375 aaPredicted RBP5.99□□□□□ -1.45
PNKP-204ENST00000594661 KRTAP8-1Q8IUC2 63 aa5.97□□□□□ -1.45
PNKP-204ENST00000594661 KRTAP10-12P60413 245 aa5.94□□□□□ -1.46
PNKP-204ENST00000594661 SSPOA2VEC9 5147 aa5.92□□□□□ -1.46
PNKP-204ENST00000594661 KRTAP9-7A8MTY7 169 aa5.9□□□□□ -1.46
PNKP-204ENST00000594661 FSIP2Q5CZC0 6907 aa5.82□□□□□ -1.48
PNKP-204ENST00000594661 KRTAP12-3P60328 96 aa5.8□□□□□ -1.48
PNKP-204ENST00000594661 KMT2DO14686 5537 aa5.8□□□□□ -1.48
PNKP-204ENST00000594661 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.78□□□□□ -1.48
PNKP-204ENST00000594661 KRTAP19-6Q3LI70 58 aa5.78□□□□□ -1.48
PNKP-204ENST00000594661 KRTAP4-8A0A0G2JLE6 195 aa5.73□□□□□ -1.49
PNKP-204ENST00000594661 KRTAP4-8Q9BYQ9 185 aa5.73□□□□□ -1.49
PNKP-204ENST00000594661 KRTAP19-5Q3LI72 72 aa5.66□□□□□ -1.5
PNKP-204ENST00000594661 FCGBPQ9Y6R7 5405 aaPredicted RBP5.61□□□□□ -1.51
PNKP-204ENST00000594661 KRTAP19-7Q3SYF9 63 aa5.54□□□□□ -1.52
PNKP-204ENST00000594661 KRTAP2-3P0C7H8 128 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms