RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 PRO2289Q9P1D8 64 aa4.84□□□□□ -1.63
LIG3-216ENST00000593099 DYNC1H1Q14204 4646 aaKnown RBP4.83□□□□□ -1.64
LIG3-216ENST00000593099 INE1O15225 51 aa4.81□□□□□ -1.64
LIG3-216ENST00000593099 DNAH17Q9UFH2 4485 aa4.77□□□□□ -1.65
LIG3-216ENST00000593099 DNAH3Q8TD57 4116 aa4.77□□□□□ -1.65
LIG3-216ENST00000593099 LRP1BQ9NZR2 4599 aa4.76□□□□□ -1.65
LIG3-216ENST00000593099 CMYA5Q8N3K9 4069 aa4.75□□□□□ -1.65
LIG3-216ENST00000593099 KRTAP3-1Q9BYR8 98 aa4.75□□□□□ -1.65
LIG3-216ENST00000593099 CSMD3Q7Z407 3707 aa4.72□□□□□ -1.65
LIG3-216ENST00000593099 FAT1Q14517 4588 aa4.7□□□□□ -1.66
LIG3-216ENST00000593099 RYR1P21817 5038 aa4.7□□□□□ -1.66
LIG3-216ENST00000593099 KIAA1109Q2LD37 5005 aa4.68□□□□□ -1.66
LIG3-216ENST00000593099 KRTAP15-1Q3LI76 137 aa4.68□□□□□ -1.66
LIG3-216ENST00000593099 DYNC2H1Q8NCM8 4307 aaKnown RBP4.66□□□□□ -1.66
LIG3-216ENST00000593099 FAT2Q9NYQ8 4349 aa4.66□□□□□ -1.66
LIG3-216ENST00000593099 DNAH2Q9P225 4427 aa4.66□□□□□ -1.66
LIG3-216ENST00000593099 RYR3Q15413 4870 aa4.66□□□□□ -1.66
LIG3-216ENST00000593099 RYR2Q92736 4967 aa4.62□□□□□ -1.67
LIG3-216ENST00000593099 SACSQ9NZJ4 4579 aa4.61□□□□□ -1.67
LIG3-216ENST00000593099 KRTAP17-1Q9BYP8 105 aa4.6□□□□□ -1.67
LIG3-216ENST00000593099 KMT2AQ03164 3969 aa4.59□□□□□ -1.67
LIG3-216ENST00000593099 BIRC6Q9NR09 4857 aa4.58□□□□□ -1.68
LIG3-216ENST00000593099 DNAH6Q9C0G6 4158 aa4.56□□□□□ -1.68
LIG3-216ENST00000593099 KRTAP4-1Q9BYQ7 146 aa4.51□□□□□ -1.69
LIG3-216ENST00000593099 KRTAP3-3Q9BYR6 98 aa4.5□□□□□ -1.69
LIG3-216ENST00000593099 KRTAP10-6P60371 365 aaPredicted RBP4.5□□□□□ -1.69
LIG3-216ENST00000593099 APOBP04114 4563 aaKnown RBP4.49□□□□□ -1.69
LIG3-216ENST00000593099 LYSTQ99698 3801 aa4.48□□□□□ -1.69
LIG3-216ENST00000593099 DNAH7Q8WXX0 4024 aa4.47□□□□□ -1.69
LIG3-216ENST00000593099 HERC2O95714 4834 aa4.47□□□□□ -1.69
LIG3-216ENST00000593099 KRTAP12-2P59991 146 aa4.46□□□□□ -1.7
LIG3-216ENST00000593099 KRTAP12-1P59990 96 aa4.45□□□□□ -1.7
LIG3-216ENST00000593099 DNAH8Q96JB1 4490 aa4.44□□□□□ -1.7
LIG3-216ENST00000593099 MT1HP80294 61 aa4.41□□□□□ -1.7
LIG3-216ENST00000593099 KRTAP3-2Q9BYR7 98 aa4.41□□□□□ -1.7
LIG3-216ENST00000593099 KRTAP13-4Q3LI77 160 aa4.4□□□□□ -1.7
LIG3-216ENST00000593099 HYDINQ4G0P3 5121 aa4.4□□□□□ -1.7
LIG3-216ENST00000593099 VPS13BQ7Z7G8 4022 aa4.4□□□□□ -1.7
LIG3-216ENST00000593099 KMT2CQ8NEZ4 4911 aaKnown RBP4.4□□□□□ -1.71
LIG3-216ENST00000593099 HECTD4Q9Y4D8 3996 aa4.37□□□□□ -1.71
LIG3-216ENST00000593099 LRP1Q07954 4544 aaKnown RBP4.35□□□□□ -1.71
LIG3-216ENST00000593099 HSPG2P98160 4391 aa4.34□□□□□ -1.71
LIG3-216ENST00000593099 FAT3Q8TDW7 4589 aa4.29□□□□□ -1.72
LIG3-216ENST00000593099 MT2AP02795 61 aa4.29□□□□□ -1.72
LIG3-216ENST00000593099 MYCBP2O75592 4640 aa4.29□□□□□ -1.72
LIG3-216ENST00000593099 LORP23490 312 aaPredicted RBP4.27□□□□□ -1.73
LIG3-216ENST00000593099 PKHD1P08F94 4074 aa4.27□□□□□ -1.73
LIG3-216ENST00000593099 FRAS1Q86XX4 4008 aa4.26□□□□□ -1.73
LIG3-216ENST00000593099 EPPK1P58107 5090 aaKnown RBP4.23□□□□□ -1.73
LIG3-216ENST00000593099 PKD1P98161 4303 aa4.21□□□□□ -1.73
LIG3-216ENST00000593099 HERC1Q15751 4861 aa4.2□□□□□ -1.74
LIG3-216ENST00000593099 MT1FP04733 61 aa4.2□□□□□ -1.74
LIG3-216ENST00000593099 KRTAP10-12P60413 245 aa4.19□□□□□ -1.74
LIG3-216ENST00000593099 PCLOQ9Y6V0 5065 aa4.17□□□□□ -1.74
LIG3-216ENST00000593099 SPRR2GQ9BYE4 73 aa4.15□□□□□ -1.74
LIG3-216ENST00000593099 ABCA13Q86UQ4 5058 aa4.14□□□□□ -1.75
LIG3-216ENST00000593099 LRP2P98164 4655 aa4.12□□□□□ -1.75
LIG3-216ENST00000593099 PKHD1L1Q86WI1 4243 aa4.11□□□□□ -1.75
LIG3-216ENST00000593099 LCE2CQ5TA81 110 aa4.08□□□□□ -1.76
LIG3-216ENST00000593099 KRTAP8-1Q8IUC2 63 aa4.06□□□□□ -1.76
LIG3-216ENST00000593099 KRTAP12-3P60328 96 aa4.01□□□□□ -1.77
LIG3-216ENST00000593099 KRTAP9-8Q9BYQ0 159 aa4.01□□□□□ -1.77
LIG3-216ENST00000593099 LCE3AQ5TA76 89 aa3.99□□□□□ -1.77
LIG3-216ENST00000593099 KRTAP19-1Q8IUB9 90 aa3.97□□□□□ -1.77
LIG3-216ENST00000593099 KRTAP19-8Q3LI54 63 aa3.97□□□□□ -1.77
LIG3-216ENST00000593099 KRTAP19-2Q3LHN2 52 aa3.96□□□□□ -1.78
LIG3-216ENST00000593099 TNXBP22105 4242 aa3.95□□□□□ -1.78
LIG3-216ENST00000593099 LPAP08519 4548 aa3.94□□□□□ -1.78
LIG3-216ENST00000593099 KRTAP9-3Q9BYQ3 159 aa3.91□□□□□ -1.78
LIG3-216ENST00000593099 KRTAP10-5P60370 271 aa3.86□□□□□ -1.79
LIG3-216ENST00000593099 SPRR2FQ96RM1 72 aa3.86□□□□□ -1.79
LIG3-216ENST00000593099 CRCT1Q9UGL9 99 aa3.86□□□□□ -1.79
LIG3-216ENST00000593099 MT1BP07438 61 aa3.85□□□□□ -1.79
LIG3-216ENST00000593099 LCE2AQ5TA79 106 aaPredicted RBP3.84□□□□□ -1.79
LIG3-216ENST00000593099 RNF213Q63HN8 5207 aa3.82□□□□□ -1.8
LIG3-216ENST00000593099 HMCN2Q8NDA2 5059 aa3.82□□□□□ -1.8
LIG3-216ENST00000593099 UBR4Q5T4S7 5183 aa3.81□□□□□ -1.8
LIG3-216ENST00000593099 KRTAP9-2Q9BYQ4 174 aa3.79□□□□□ -1.8
LIG3-216ENST00000593099 MUC17Q685J3 4493 aa3.78□□□□□ -1.8
LIG3-216ENST00000593099 FAT4Q6V0I7 4981 aa3.78□□□□□ -1.8
LIG3-216ENST00000593099 MT1XP80297 61 aa3.77□□□□□ -1.81
LIG3-216ENST00000593099 LCE2BO14633 110 aa3.77□□□□□ -1.81
LIG3-216ENST00000593099 FLGP20930 4061 aaPredicted RBP3.74□□□□□ -1.81
LIG3-216ENST00000593099 LCE2DQ5TA82 110 aaPredicted RBP3.74□□□□□ -1.81
LIG3-216ENST00000593099 KRTAP10-7P60409 375 aaPredicted RBP3.73□□□□□ -1.81
LIG3-216ENST00000593099 KRTAP19-5Q3LI72 72 aa3.73□□□□□ -1.81
LIG3-216ENST00000593099 SPRR2EP22531 72 aa3.67□□□□□ -1.82
LIG3-216ENST00000593099 SPRR2BP35325 72 aa3.67□□□□□ -1.82
LIG3-216ENST00000593099 SPRR2AP35326 72 aa3.67□□□□□ -1.82
LIG3-216ENST00000593099 KRTAP19-6Q3LI70 58 aa3.65□□□□□ -1.83
LIG3-216ENST00000593099 KRTAP19-4Q3LI73 84 aa3.64□□□□□ -1.83
LIG3-216ENST00000593099 KRTAP9-6A0A140TA67 174 aa3.62□□□□□ -1.83
LIG3-216ENST00000593099 KRTAP4-8A0A0G2JLE6 195 aa3.59□□□□□ -1.83
LIG3-216ENST00000593099 KRTAP4-8Q9BYQ9 185 aa3.59□□□□□ -1.83
LIG3-216ENST00000593099 FSIP2Q5CZC0 6907 aa3.55□□□□□ -1.84
LIG3-216ENST00000593099 SPRR2DP22532 72 aa3.55□□□□□ -1.84
LIG3-216ENST00000593099 LCE3CQ5T5A8 94 aa3.54□□□□□ -1.84
LIG3-216ENST00000593099 MT3P25713 68 aa3.51□□□□□ -1.85
LIG3-216ENST00000593099 MT1GP13640 62 aa3.5□□□□□ -1.85
LIG3-216ENST00000593099 MUC2Q02817 5179 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms