RNA–Protein interactions for RNA: ENST00000591126.5

SMAD4-212, Transcript of SMAD family member 4, humanhuman

TSL 1 (best)

Gene SMAD4, Length 4,970 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-212ENST00000591126 STARD9Q9P2P6 4700 aa2.9□□□□□ -1.94
SMAD4-212ENST00000591126 DNAH1Q9P2D7 4330 aa2.89□□□□□ -1.95
SMAD4-212ENST00000591126 DNAH3Q8TD57 4116 aa2.89□□□□□ -1.95
SMAD4-212ENST00000591126 PLECQ15149 4684 aaKnown RBP2.89□□□□□ -1.95
SMAD4-212ENST00000591126 CSMD3Q7Z407 3707 aa2.88□□□□□ -1.95
SMAD4-212ENST00000591126 LCE2DQ5TA82 110 aaPredicted RBP2.84□□□□□ -1.95
SMAD4-212ENST00000591126 KIAA1109Q2LD37 5005 aa2.83□□□□□ -1.96
SMAD4-212ENST00000591126 KRTAP19-4Q3LI73 84 aa2.82□□□□□ -1.96
SMAD4-212ENST00000591126 KRTAP10-6P60371 365 aaPredicted RBP2.82□□□□□ -1.96
SMAD4-212ENST00000591126 KMT2AQ03164 3969 aa2.82□□□□□ -1.96
SMAD4-212ENST00000591126 DNAH11Q96DT5 4516 aa2.81□□□□□ -1.96
SMAD4-212ENST00000591126 DNAH10Q8IVF4 4471 aa2.81□□□□□ -1.96
SMAD4-212ENST00000591126 SACSQ9NZJ4 4579 aa2.81□□□□□ -1.96
SMAD4-212ENST00000591126 KRTAP3-1Q9BYR8 98 aa2.8□□□□□ -1.96
SMAD4-212ENST00000591126 RYR2Q92736 4967 aa2.8□□□□□ -1.96
SMAD4-212ENST00000591126 RYR3Q15413 4870 aa2.8□□□□□ -1.96
SMAD4-212ENST00000591126 KRTAP10-12P60413 245 aa2.8□□□□□ -1.96
SMAD4-212ENST00000591126 MT1HP80294 61 aa2.8□□□□□ -1.96
SMAD4-212ENST00000591126 HYDINQ4G0P3 5121 aa2.79□□□□□ -1.96
SMAD4-212ENST00000591126 VPS13DQ5THJ4 4388 aa2.79□□□□□ -1.96
SMAD4-212ENST00000591126 LYSTQ99698 3801 aa2.79□□□□□ -1.96
SMAD4-212ENST00000591126 LCE2CQ5TA81 110 aa2.78□□□□□ -1.96
SMAD4-212ENST00000591126 KRTAP8-1Q8IUC2 63 aa2.78□□□□□ -1.97
SMAD4-212ENST00000591126 KRTAP12-1P59990 96 aa2.77□□□□□ -1.97
SMAD4-212ENST00000591126 DNAH7Q8WXX0 4024 aa2.76□□□□□ -1.97
SMAD4-212ENST00000591126 EPPK1P58107 5090 aaKnown RBP2.75□□□□□ -1.97
SMAD4-212ENST00000591126 KRTAP15-1Q3LI76 137 aa2.74□□□□□ -1.97
SMAD4-212ENST00000591126 DNAH5Q8TE73 4624 aa2.73□□□□□ -1.97
SMAD4-212ENST00000591126 DYNC2H1Q8NCM8 4307 aaKnown RBP2.73□□□□□ -1.97
SMAD4-212ENST00000591126 DYNC1H1Q14204 4646 aaKnown RBP2.73□□□□□ -1.97
SMAD4-212ENST00000591126 FAT1Q14517 4588 aa2.73□□□□□ -1.97
SMAD4-212ENST00000591126 PKHD1P08F94 4074 aa2.72□□□□□ -1.97
SMAD4-212ENST00000591126 LRP1BQ9NZR2 4599 aa2.72□□□□□ -1.97
SMAD4-212ENST00000591126 KRTAP12-2P59991 146 aa2.71□□□□□ -1.98
SMAD4-212ENST00000591126 BIRC6Q9NR09 4857 aa2.71□□□□□ -1.98
SMAD4-212ENST00000591126 FRAS1Q86XX4 4008 aa2.71□□□□□ -1.98
SMAD4-212ENST00000591126 LCE2BO14633 110 aa2.7□□□□□ -1.98
SMAD4-212ENST00000591126 RYR1P21817 5038 aa2.69□□□□□ -1.98
SMAD4-212ENST00000591126 DNAH17Q9UFH2 4485 aa2.69□□□□□ -1.98
SMAD4-212ENST00000591126 MT2AP02795 61 aa2.69□□□□□ -1.98
SMAD4-212ENST00000591126 DNAH2Q9P225 4427 aa2.69□□□□□ -1.98
SMAD4-212ENST00000591126 SPRR2GQ9BYE4 73 aa2.69□□□□□ -1.98
SMAD4-212ENST00000591126 HERC2O95714 4834 aa2.67□□□□□ -1.98
SMAD4-212ENST00000591126 HERC1Q15751 4861 aa2.66□□□□□ -1.98
SMAD4-212ENST00000591126 APOBP04114 4563 aaKnown RBP2.66□□□□□ -1.98
SMAD4-212ENST00000591126 DNAH6Q9C0G6 4158 aa2.65□□□□□ -1.98
SMAD4-212ENST00000591126 LCE2AQ5TA79 106 aaPredicted RBP2.64□□□□□ -1.99
SMAD4-212ENST00000591126 LORP23490 312 aaPredicted RBP2.64□□□□□ -1.99
SMAD4-212ENST00000591126 MYCBP2O75592 4640 aa2.64□□□□□ -1.99
SMAD4-212ENST00000591126 FAT2Q9NYQ8 4349 aa2.63□□□□□ -1.99
SMAD4-212ENST00000591126 KRTAP12-3P60328 96 aa2.63□□□□□ -1.99
SMAD4-212ENST00000591126 KRTAP4-1Q9BYQ7 146 aa2.62□□□□□ -1.99
SMAD4-212ENST00000591126 PKD1P98161 4303 aa2.61□□□□□ -1.99
SMAD4-212ENST00000591126 CRCT1Q9UGL9 99 aa2.6□□□□□ -1.99
SMAD4-212ENST00000591126 ABCA13Q86UQ4 5058 aa2.6□□□□□ -1.99
SMAD4-212ENST00000591126 HSPG2P98160 4391 aa2.6□□□□□ -1.99
SMAD4-212ENST00000591126 LRP1Q07954 4544 aaKnown RBP2.59□□□□□ -1.99
SMAD4-212ENST00000591126 VPS13BQ7Z7G8 4022 aa2.59□□□□□ -2
SMAD4-212ENST00000591126 HECTD4Q9Y4D8 3996 aa2.58□□□□□ -2
SMAD4-212ENST00000591126 PCLOQ9Y6V0 5065 aa2.58□□□□□ -2
SMAD4-212ENST00000591126 KRTAP10-7P60409 375 aaPredicted RBP2.58□□□□□ -2
SMAD4-212ENST00000591126 INE1O15225 51 aa2.58□□□□□ -2
SMAD4-212ENST00000591126 KRTAP19-8Q3LI54 63 aa2.57□□□□□ -2
SMAD4-212ENST00000591126 MT1FP04733 61 aa2.57□□□□□ -2
SMAD4-212ENST00000591126 SPRR2FQ96RM1 72 aa2.57□□□□□ -2
SMAD4-212ENST00000591126 FAT3Q8TDW7 4589 aa2.56□□□□□ -2
SMAD4-212ENST00000591126 DNAH8Q96JB1 4490 aa2.54□□□□□ -2
SMAD4-212ENST00000591126 KRTAP10-5P60370 271 aa2.53□□□□□ -2
SMAD4-212ENST00000591126 KRTAP9-6A0A140TA67 174 aa2.53□□□□□ -2
SMAD4-212ENST00000591126 SPRR2EP22531 72 aa2.52□□□□□ -2.01
SMAD4-212ENST00000591126 SPRR2BP35325 72 aa2.52□□□□□ -2.01
SMAD4-212ENST00000591126 SPRR2AP35326 72 aa2.52□□□□□ -2.01
SMAD4-212ENST00000591126 KRTAP9-2Q9BYQ4 174 aa2.51□□□□□ -2.01
SMAD4-212ENST00000591126 LOC100996750A0A140TA64 210 aa2.5□□□□□ -2.01
SMAD4-212ENST00000591126 KRTAP4-6Q9BYQ5 205 aa2.5□□□□□ -2.01
SMAD4-212ENST00000591126 LRP2P98164 4655 aa2.49□□□□□ -2.01
SMAD4-212ENST00000591126 LCE3AQ5TA76 89 aa2.48□□□□□ -2.01
SMAD4-212ENST00000591126 SPRR2DP22532 72 aa2.48□□□□□ -2.01
SMAD4-212ENST00000591126 KRTAP19-1Q8IUB9 90 aa2.45□□□□□ -2.02
SMAD4-212ENST00000591126 KRTAP9-8Q9BYQ0 159 aa2.44□□□□□ -2.02
SMAD4-212ENST00000591126 PKHD1L1Q86WI1 4243 aa2.44□□□□□ -2.02
SMAD4-212ENST00000591126 KRTAP9-3Q9BYQ3 159 aa2.42□□□□□ -2.02
SMAD4-212ENST00000591126 KRTAP19-6Q3LI70 58 aa2.42□□□□□ -2.02
SMAD4-212ENST00000591126 RNF213Q63HN8 5207 aa2.42□□□□□ -2.02
SMAD4-212ENST00000591126 UBR4Q5T4S7 5183 aa2.41□□□□□ -2.02
SMAD4-212ENST00000591126 KRTAP12-4P60329 112 aa2.4□□□□□ -2.03
SMAD4-212ENST00000591126 MT1GP13640 62 aa2.39□□□□□ -2.03
SMAD4-212ENST00000591126 HMCN2Q8NDA2 5059 aa2.37□□□□□ -2.03
SMAD4-212ENST00000591126 LPAP08519 4548 aa2.36□□□□□ -2.03
SMAD4-212ENST00000591126 MT1BP07438 61 aa2.34□□□□□ -2.03
SMAD4-212ENST00000591126 KRTAP6-3Q3LI67 103 aa2.34□□□□□ -2.03
SMAD4-212ENST00000591126 TNXBP22105 4242 aa2.33□□□□□ -2.04
SMAD4-212ENST00000591126 KRTAP19-5Q3LI72 72 aa2.33□□□□□ -2.04
SMAD4-212ENST00000591126 MUC2Q02817 5179 aa2.33□□□□□ -2.04
SMAD4-212ENST00000591126 KRTAP20-1Q3LI63 56 aa2.32□□□□□ -2.04
SMAD4-212ENST00000591126 KRTAP9-7A8MTY7 169 aa2.31□□□□□ -2.04
SMAD4-212ENST00000591126 LCE3CQ5T5A8 94 aa2.3□□□□□ -2.04
SMAD4-212ENST00000591126 MT1XP80297 61 aa2.29□□□□□ -2.04
SMAD4-212ENST00000591126 LCE1AQ5T7P2 110 aa2.28□□□□□ -2.04
SMAD4-212ENST00000591126 KRTAP2-3P0C7H8 128 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms