RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 IGFL1Q6UW32 110 aa4.4□□□□□ -1.71
SMAD4-209ENST00000589941 PHF5AQ7RTV0 110 aaKnown RBP4.39□□□□□ -1.71
SMAD4-209ENST00000589941 NDUFB1O75438 58 aa4.38□□□□□ -1.71
SMAD4-209ENST00000589941 UBE2BP63146 152 aa4.38□□□□□ -1.71
SMAD4-209ENST00000589941 ASB16-AS1Q495Z4 193 aa4.38□□□□□ -1.71
SMAD4-209ENST00000589941 SPANXA2-OT1Q8N9U9 137 aa4.38□□□□□ -1.71
SMAD4-209ENST00000589941 C1orf64Q8NEQ6 169 aa4.38□□□□□ -1.71
SMAD4-209ENST00000589941 TRAV22A0A0B4J277 110 aa4.36□□□□□ -1.71
SMAD4-209ENST00000589941 PRR15Q8IV56 129 aa4.35□□□□□ -1.71
SMAD4-209ENST00000589941 LINC00472Q9H8W2 130 aa4.35□□□□□ -1.71
SMAD4-209ENST00000589941 PKIGQ9Y2B9 76 aa4.35□□□□□ -1.71
SMAD4-209ENST00000589941 KRTAP13-1Q8IUC0 172 aa4.34□□□□□ -1.71
SMAD4-209ENST00000589941 A0A087WSZ3 146 aa4.33□□□□□ -1.72
SMAD4-209ENST00000589941 A8MWP4 228 aa4.33□□□□□ -1.72
SMAD4-209ENST00000589941 MP68P56378 58 aa4.33□□□□□ -1.72
SMAD4-209ENST00000589941 MMP24-AS1A0A0U1RRL7 71 aa4.31□□□□□ -1.72
SMAD4-209ENST00000589941 UBE2AP49459 152 aa4.31□□□□□ -1.72
SMAD4-209ENST00000589941 PRLHP81277 87 aa4.31□□□□□ -1.72
SMAD4-209ENST00000589941 BRK1Q8WUW1 75 aa4.31□□□□□ -1.72
SMAD4-209ENST00000589941 A0A0G2JQZ4 141 aa4.3□□□□□ -1.72
SMAD4-209ENST00000589941 PMAIP1Q13794 54 aa4.3□□□□□ -1.72
SMAD4-209ENST00000589941 KRTAP13-3Q3SY46 172 aa4.3□□□□□ -1.72
SMAD4-209ENST00000589941 KRTAP13-2Q52LG2 175 aa4.3□□□□□ -1.72
SMAD4-209ENST00000589941 CASC2Q6XLA1 102 aa4.3□□□□□ -1.72
SMAD4-209ENST00000589941 H0Y9P7 68 aa4.29□□□□□ -1.72
SMAD4-209ENST00000589941 WFDC13Q8IUB5 93 aa4.29□□□□□ -1.72
SMAD4-209ENST00000589941 LINC00483Q53H64 154 aa4.28□□□□□ -1.72
SMAD4-209ENST00000589941 TYMSOSQ8TAI1 123 aa4.28□□□□□ -1.72
SMAD4-209ENST00000589941 LINC00208Q96KT6 92 aa4.28□□□□□ -1.72
SMAD4-209ENST00000589941 Q96NJ1 140 aa4.28□□□□□ -1.72
SMAD4-209ENST00000589941 MOBPQ13875 183 aa4.27□□□□□ -1.73
SMAD4-209ENST00000589941 LIMD2Q9BT23 127 aa4.27□□□□□ -1.73
SMAD4-209ENST00000589941 ANAPC11Q9NYG5 84 aa4.27□□□□□ -1.73
SMAD4-209ENST00000589941 LOC101927531A0A1B0GV80 90 aa4.26□□□□□ -1.73
SMAD4-209ENST00000589941 M0R2T5 61 aa4.26□□□□□ -1.73
SMAD4-209ENST00000589941 DEFB116Q30KQ4 102 aa4.26□□□□□ -1.73
SMAD4-209ENST00000589941 Q5VV11 94 aa4.26□□□□□ -1.73
SMAD4-209ENST00000589941 TP53AIP1Q9HCN2 124 aa4.26□□□□□ -1.73
SMAD4-209ENST00000589941 LINC00304Q8N9R0 145 aa4.25□□□□□ -1.73
SMAD4-209ENST00000589941 NEBP20929 6669 aa4.25□□□□□ -1.73
SMAD4-209ENST00000589941 A8MUN3 132 aa4.23□□□□□ -1.73
SMAD4-209ENST00000589941 KRTAP6-3Q3LI67 103 aa4.22□□□□□ -1.73
SMAD4-209ENST00000589941 C8orf17Q9NRJ1 99 aa4.22□□□□□ -1.73
SMAD4-209ENST00000589941 MUC12Q9UKN1 5478 aa4.22□□□□□ -1.73
SMAD4-209ENST00000589941 PSPHP1O15172 72 aa4.21□□□□□ -1.74
SMAD4-209ENST00000589941 ZNF861PO60384 105 aa4.21□□□□□ -1.74
SMAD4-209ENST00000589941 KRTAP20-1Q3LI63 56 aa4.21□□□□□ -1.74
SMAD4-209ENST00000589941 LCE3EQ5T5B0 92 aa4.21□□□□□ -1.74
SMAD4-209ENST00000589941 COA5Q86WW8 74 aa4.21□□□□□ -1.74
SMAD4-209ENST00000589941 A0A1B0GVX0 72 aa4.2□□□□□ -1.74
SMAD4-209ENST00000589941 ZNF706Q9Y5V0 76 aaPredicted RBP4.2□□□□□ -1.74
SMAD4-209ENST00000589941 LINC01558Q9Y6Z2 57 aa4.2□□□□□ -1.74
SMAD4-209ENST00000589941 MRPL34Q9BQ48 92 aaKnown RBP4.17□□□□□ -1.74
SMAD4-209ENST00000589941 ATP11AUNQ6ZP68 121 aa4.15□□□□□ -1.75
SMAD4-209ENST00000589941 PRR15LQ9BU68 103 aa4.15□□□□□ -1.75
SMAD4-209ENST00000589941 CDC42SE1Q9NRR8 79 aa4.15□□□□□ -1.75
SMAD4-209ENST00000589941 CHKB-CPT1BH3BT56 60 aa4.14□□□□□ -1.75
SMAD4-209ENST00000589941 HRES1P13985 223 aa4.14□□□□□ -1.75
SMAD4-209ENST00000589941 PCOTHQ58A44 107 aa4.14□□□□□ -1.75
SMAD4-209ENST00000589941 LCA10Q71F78 164 aa4.14□□□□□ -1.75
SMAD4-209ENST00000589941 A8MU10 97 aa4.13□□□□□ -1.75
SMAD4-209ENST00000589941 A6NN06 94 aa4.12□□□□□ -1.75
SMAD4-209ENST00000589941 C8orf87E5RJ46 101 aa4.12□□□□□ -1.75
SMAD4-209ENST00000589941 RBM12B-AS1Q9P1G2 102 aa4.12□□□□□ -1.75
SMAD4-209ENST00000589941 IGHV6-1A0A0B4J1U7 121 aa4.11□□□□□ -1.75
SMAD4-209ENST00000589941 KRTAP5-1Q6L8H4 278 aa4.11□□□□□ -1.75
SMAD4-209ENST00000589941 COX6B2Q6YFQ2 88 aa4.1□□□□□ -1.75
SMAD4-209ENST00000589941 SSBP3-AS1Q7Z2R9 100 aa4.1□□□□□ -1.75
SMAD4-209ENST00000589941 KTN1-AS1Q86SY8 53 aa4.1□□□□□ -1.75
SMAD4-209ENST00000589941 NDUFS5O43920 106 aa4.09□□□□□ -1.75
SMAD4-209ENST00000589941 Q5W150 140 aa4.09□□□□□ -1.75
SMAD4-209ENST00000589941 A6NED7 52 aa4.08□□□□□ -1.76
SMAD4-209ENST00000589941 DMAC1Q96GE9 116 aa4.08□□□□□ -1.76
SMAD4-209ENST00000589941 KRTAP19-6Q3LI70 58 aa4.07□□□□□ -1.76
SMAD4-209ENST00000589941 MT2AP02795 61 aa4.06□□□□□ -1.76
SMAD4-209ENST00000589941 ACYP2P14621 99 aa4.05□□□□□ -1.76
SMAD4-209ENST00000589941 KRTAP12-2P59991 146 aa4.05□□□□□ -1.76
SMAD4-209ENST00000589941 SPAG11AQ6PDA7 123 aa4.05□□□□□ -1.76
SMAD4-209ENST00000589941 MT1FP04733 61 aa4.04□□□□□ -1.76
SMAD4-209ENST00000589941 SPINK7P58062 85 aa4.04□□□□□ -1.76
SMAD4-209ENST00000589941 C7orf65Q6ZTY9 151 aa4.03□□□□□ -1.76
SMAD4-209ENST00000589941 MDN1Q9NU22 5596 aa4.03□□□□□ -1.76
SMAD4-209ENST00000589941 LINC00313P59037 77 aa4□□□□□ -1.77
SMAD4-209ENST00000589941 SPTSSBQ8NFR3 76 aa4□□□□□ -1.77
SMAD4-209ENST00000589941 KMT2DO14686 5537 aa4□□□□□ -1.77
SMAD4-209ENST00000589941 C9orf92A6NGG3 77 aa3.98□□□□□ -1.77
SMAD4-209ENST00000589941 SPATA8Q6RVD6 105 aa3.98□□□□□ -1.77
SMAD4-209ENST00000589941 GPR98Q8WXG9 6306 aa3.95□□□□□ -1.78
SMAD4-209ENST00000589941 SPINK1P00995 79 aa3.94□□□□□ -1.78
SMAD4-209ENST00000589941 RPS29P62273 56 aaKnown RBP3.93□□□□□ -1.78
SMAD4-209ENST00000589941 A0A1B0GU69 56 aa3.92□□□□□ -1.78
SMAD4-209ENST00000589941 UQCR11O14957 56 aa3.9□□□□□ -1.79
SMAD4-209ENST00000589941 KRTAP2-3P0C7H8 128 aa3.9□□□□□ -1.79
SMAD4-209ENST00000589941 KRTAP10-10P60014 251 aa3.9□□□□□ -1.79
SMAD4-209ENST00000589941 KRTAP4-4Q9BYR3 166 aa3.9□□□□□ -1.79
SMAD4-209ENST00000589941 KRTAP2-4Q9BYR9 128 aa3.9□□□□□ -1.79
SMAD4-209ENST00000589941 MIR22HGQ0VDD5 57 aa3.88□□□□□ -1.79
SMAD4-209ENST00000589941 RPL37P61927 97 aaKnown RBP3.87□□□□□ -1.79
SMAD4-209ENST00000589941 KRTAP5-4Q6L8H1 288 aa3.87□□□□□ -1.79
SMAD4-209ENST00000589941 LINC01554Q52M75 96 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms