RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 SPRR2GQ9BYE4 73 aa12.61□□□□□ -0.39
LIG3-208ENST00000586407 KLKP1Q107X0 134 aa12.59□□□□□ -0.39
LIG3-208ENST00000586407 KRTAP19-8Q3LI54 63 aa12.55□□□□□ -0.4
LIG3-208ENST00000586407 Q5VV11 94 aa12.55□□□□□ -0.4
LIG3-208ENST00000586407 SYNE2Q8WXH0 6885 aaKnown RBP12.54□□□□□ -0.4
LIG3-208ENST00000586407 LINC00208Q96KT6 92 aa12.52□□□□□ -0.41
LIG3-208ENST00000586407 OCR1Q9BZK8 76 aa12.48□□□□□ -0.41
LIG3-208ENST00000586407 A6NN06 94 aa12.43□□□□□ -0.42
LIG3-208ENST00000586407 NDUFC1O43677 76 aa12.43□□□□□ -0.42
LIG3-208ENST00000586407 MP68P56378 58 aa12.39□□□□□ -0.43
LIG3-208ENST00000586407 IMUPQ9GZP8 106 aa12.39□□□□□ -0.43
LIG3-208ENST00000586407 A8MUN3 132 aa12.36□□□□□ -0.43
LIG3-208ENST00000586407 KRTAP6-3Q3LI67 103 aa12.34□□□□□ -0.43
LIG3-208ENST00000586407 CRIPTQ9P021 101 aa12.33□□□□□ -0.44
LIG3-208ENST00000586407 J3QR89 54 aa12.3□□□□□ -0.44
LIG3-208ENST00000586407 H0YAA0 97 aa12.28□□□□□ -0.44
LIG3-208ENST00000586407 KRTAP10-5P60370 271 aa12.28□□□□□ -0.44
LIG3-208ENST00000586407 ADM2Q7Z4H4 148 aa12.27□□□□□ -0.45
LIG3-208ENST00000586407 SCGB1A1P11684 91 aa12.19□□□□□ -0.46
LIG3-208ENST00000586407 H3BPC8 53 aa12.16□□□□□ -0.46
LIG3-208ENST00000586407 DMAC1Q96GE9 116 aa12.09□□□□□ -0.47
LIG3-208ENST00000586407 MT-ATP8P03928 68 aa12.03□□□□□ -0.48
LIG3-208ENST00000586407 P0C880 135 aa12.02□□□□□ -0.49
LIG3-208ENST00000586407 R4GN34 69 aa11.9□□□□□ -0.5
LIG3-208ENST00000586407 KRTAP3-2Q9BYR7 98 aa11.89□□□□□ -0.51
LIG3-208ENST00000586407 K7ERU9 68 aa11.86□□□□□ -0.51
LIG3-208ENST00000586407 M0QZ58 72 aa11.86□□□□□ -0.51
LIG3-208ENST00000586407 TRAV7A0A075B6U4 112 aa11.85□□□□□ -0.51
LIG3-208ENST00000586407 MT1XP80297 61 aa11.84□□□□□ -0.51
LIG3-208ENST00000586407 C20orf197Q8N268 126 aa11.84□□□□□ -0.51
LIG3-208ENST00000586407 NEBP20929 6669 aa11.83□□□□□ -0.52
LIG3-208ENST00000586407 PLAC4Q8WY50 150 aa11.82□□□□□ -0.52
LIG3-208ENST00000586407 SMIM20Q8N5G0 67 aa11.78□□□□□ -0.52
LIG3-208ENST00000586407 KRTAP5-9P26371 169 aa11.77□□□□□ -0.53
LIG3-208ENST00000586407 ACYP2P14621 99 aa11.76□□□□□ -0.53
LIG3-208ENST00000586407 MUC12Q9UKN1 5478 aa11.75□□□□□ -0.53
LIG3-208ENST00000586407 PRO2289Q9P1D8 64 aa11.74□□□□□ -0.53
LIG3-208ENST00000586407 LINC01554Q52M75 96 aa11.73□□□□□ -0.53
LIG3-208ENST00000586407 SNURFQ9Y675 71 aa11.7□□□□□ -0.54
LIG3-208ENST00000586407 KMT2DO14686 5537 aa11.59□□□□□ -0.55
LIG3-208ENST00000586407 CHKB-CPT1BH3BT56 60 aa11.58□□□□□ -0.56
LIG3-208ENST00000586407 SPTSSBQ8NFR3 76 aa11.57□□□□□ -0.56
LIG3-208ENST00000586407 SPRR2FQ96RM1 72 aa11.49□□□□□ -0.57
LIG3-208ENST00000586407 KRTAP12-2P59991 146 aa11.46□□□□□ -0.57
LIG3-208ENST00000586407 KRTAP20-1Q3LI63 56 aa11.45□□□□□ -0.58
LIG3-208ENST00000586407 SERP2Q8N6R1 65 aa11.44□□□□□ -0.58
LIG3-208ENST00000586407 KRTAP8-1Q8IUC2 63 aa11.43□□□□□ -0.58
LIG3-208ENST00000586407 MDN1Q9NU22 5596 aa11.42□□□□□ -0.58
LIG3-208ENST00000586407 SPANXA2-OT1Q8N9U9 137 aa11.42□□□□□ -0.58
LIG3-208ENST00000586407 KRTAP4-8A0A0G2JLE6 195 aa11.37□□□□□ -0.59
LIG3-208ENST00000586407 KRTAP4-8Q9BYQ9 185 aa11.37□□□□□ -0.59
LIG3-208ENST00000586407 KRTAP10-7P60409 375 aaPredicted RBP11.33□□□□□ -0.6
LIG3-208ENST00000586407 SPRR2EP22531 72 aa11.32□□□□□ -0.6
LIG3-208ENST00000586407 SPRR2BP35325 72 aa11.32□□□□□ -0.6
LIG3-208ENST00000586407 SPRR2AP35326 72 aa11.32□□□□□ -0.6
LIG3-208ENST00000586407 KRTAP13-4Q3LI77 160 aa11.26□□□□□ -0.61
LIG3-208ENST00000586407 KRTAP10-12P60413 245 aa11.19□□□□□ -0.62
LIG3-208ENST00000586407 COA5Q86WW8 74 aa11.19□□□□□ -0.62
LIG3-208ENST00000586407 LCE1AQ5T7P2 110 aa11.16□□□□□ -0.62
LIG3-208ENST00000586407 KRTAP2-3P0C7H8 128 aa11.12□□□□□ -0.63
LIG3-208ENST00000586407 KRTAP2-4Q9BYR9 128 aa11.12□□□□□ -0.63
LIG3-208ENST00000586407 COX7CP15954 63 aa11.09□□□□□ -0.63
LIG3-208ENST00000586407 CYSTM1Q9H1C7 97 aa11.05□□□□□ -0.64
LIG3-208ENST00000586407 CAMK2N1Q7Z7J9 78 aa10.96□□□□□ -0.65
LIG3-208ENST00000586407 H7BZZ5 65 aa10.95□□□□□ -0.66
LIG3-208ENST00000586407 SPRR2DP22532 72 aa10.94□□□□□ -0.66
LIG3-208ENST00000586407 A0A0D9SG42 100 aa10.91□□□□□ -0.66
LIG3-208ENST00000586407 SERP1Q9Y6X1 66 aa10.9□□□□□ -0.66
LIG3-208ENST00000586407 SEC61GP60059 68 aa10.89□□□□□ -0.67
LIG3-208ENST00000586407 SPATA8Q6RVD6 105 aa10.87□□□□□ -0.67
LIG3-208ENST00000586407 A0A1B0GU33 70 aa10.77□□□□□ -0.69
LIG3-208ENST00000586407 KRTAP2-2Q9BYT5 123 aa10.76□□□□□ -0.69
LIG3-208ENST00000586407 KRTAP2-1Q9BYU5 128 aa10.76□□□□□ -0.69
LIG3-208ENST00000586407 SPINT4Q6UDR6 99 aa10.72□□□□□ -0.69
LIG3-208ENST00000586407 ANAPC13Q9BS18 74 aa10.7□□□□□ -0.7
LIG3-208ENST00000586407 KRTAP12-1P59990 96 aa10.64□□□□□ -0.71
LIG3-208ENST00000586407 LCE3BQ5TA77 95 aa10.63□□□□□ -0.71
LIG3-208ENST00000586407 A0A1B0GU69 56 aa10.58□□□□□ -0.72
LIG3-208ENST00000586407 CCDC179H3BU77 68 aa10.57□□□□□ -0.72
LIG3-208ENST00000586407 KRTAP19-7Q3SYF9 63 aa10.57□□□□□ -0.72
LIG3-208ENST00000586407 A8MU10 97 aa10.49□□□□□ -0.73
LIG3-208ENST00000586407 MT1EP04732 61 aa10.48□□□□□ -0.73
LIG3-208ENST00000586407 SMIM26A0A096LP01 95 aa10.43□□□□□ -0.74
LIG3-208ENST00000586407 LCE5AQ5TCM9 118 aa10.38□□□□□ -0.75
LIG3-208ENST00000586407 KRTAP19-3Q7Z4W3 81 aa10.36□□□□□ -0.75
LIG3-208ENST00000586407 KRTAP19-5Q3LI72 72 aa10.34□□□□□ -0.75
LIG3-208ENST00000586407 ATP5EP56381 51 aaPredicted RBP10.29□□□□□ -0.76
LIG3-208ENST00000586407 PRR15LQ9BU68 103 aa10.21□□□□□ -0.77
LIG3-208ENST00000586407 C10orf95Q9H7T3 257 aa10.2□□□□□ -0.78
LIG3-208ENST00000586407 LINC01558Q9Y6Z2 57 aa10.16□□□□□ -0.78
LIG3-208ENST00000586407 DSTQ03001 7570 aaKnown RBP10.11□□□□□ -0.79
LIG3-208ENST00000586407 LCE3AQ5TA76 89 aa10.11□□□□□ -0.79
LIG3-208ENST00000586407 TNP1P09430 55 aa10.07□□□□□ -0.8
LIG3-208ENST00000586407 MT1GP13640 62 aa10.07□□□□□ -0.8
LIG3-208ENST00000586407 TMEM258P61165 79 aa10.05□□□□□ -0.8
LIG3-208ENST00000586407 MT1LQ93083 61 aa10.02□□□□□ -0.81
LIG3-208ENST00000586407 MT1MQ8N339 61 aa9.98□□□□□ -0.81
LIG3-208ENST00000586407 PP632Q6XCG6 107 aa9.97□□□□□ -0.81
LIG3-208ENST00000586407 KRTAP4-9Q9BYQ8 210 aa9.95□□□□□ -0.82
LIG3-208ENST00000586407 UQCR11O14957 56 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms