RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 GPR98Q8WXG9 6306 aa6.12□□□□□ -1.43
CCDC40-216ENST00000576241 F8W1H4 67 aa6.11□□□□□ -1.43
CCDC40-216ENST00000576241 CYP4F30PQ9H0H9 118 aa6.1□□□□□ -1.43
CCDC40-216ENST00000576241 ETDBQ3ZM63 59 aa6.08□□□□□ -1.44
CCDC40-216ENST00000576241 KRTAP2-2Q9BYT5 123 aa6.08□□□□□ -1.44
CCDC40-216ENST00000576241 KRTAP2-1Q9BYU5 128 aa6.08□□□□□ -1.44
CCDC40-216ENST00000576241 TRAV22A0A0B4J277 110 aa6.07□□□□□ -1.44
CCDC40-216ENST00000576241 KRTAP3-3Q9BYR6 98 aa6.07□□□□□ -1.44
CCDC40-216ENST00000576241 LOC101927531A0A1B0GV80 90 aa6.06□□□□□ -1.44
CCDC40-216ENST00000576241 KRTAP10-5P60370 271 aa6.06□□□□□ -1.44
CCDC40-216ENST00000576241 CRIPTQ9P021 101 aa6.05□□□□□ -1.44
CCDC40-216ENST00000576241 A0A087WVE0 104 aa6.01□□□□□ -1.45
CCDC40-216ENST00000576241 IMUPQ9GZP8 106 aa6.01□□□□□ -1.45
CCDC40-216ENST00000576241 ACYP1P07311 99 aa5.99□□□□□ -1.45
CCDC40-216ENST00000576241 J3QR89 54 aa5.98□□□□□ -1.45
CCDC40-216ENST00000576241 K7ERU9 68 aa5.98□□□□□ -1.45
CCDC40-216ENST00000576241 NDUFC1O43677 76 aa5.98□□□□□ -1.45
CCDC40-216ENST00000576241 SPRR2EP22531 72 aa5.98□□□□□ -1.45
CCDC40-216ENST00000576241 SPRR2BP35325 72 aa5.98□□□□□ -1.45
CCDC40-216ENST00000576241 SPRR2AP35326 72 aa5.98□□□□□ -1.45
CCDC40-216ENST00000576241 ATOX1O00244 68 aa5.97□□□□□ -1.45
CCDC40-216ENST00000576241 UQCRQO14949 82 aa5.97□□□□□ -1.45
CCDC40-216ENST00000576241 ATP5EP2Q5VTU8 51 aa5.97□□□□□ -1.45
CCDC40-216ENST00000576241 HIST1H4AP62805 103 aaKnown RBP5.96□□□□□ -1.46
CCDC40-216ENST00000576241 H0Y9P7 68 aa5.95□□□□□ -1.46
CCDC40-216ENST00000576241 FAM240AA0A1B0GVK7 77 aa5.93□□□□□ -1.46
CCDC40-216ENST00000576241 H0YAA0 97 aa5.93□□□□□ -1.46
CCDC40-216ENST00000576241 A8MUN3 132 aa5.9□□□□□ -1.46
CCDC40-216ENST00000576241 SPRR2FQ96RM1 72 aa5.89□□□□□ -1.47
CCDC40-216ENST00000576241 ADM2Q7Z4H4 148 aa5.88□□□□□ -1.47
CCDC40-216ENST00000576241 LINC00208Q96KT6 92 aa5.84□□□□□ -1.47
CCDC40-216ENST00000576241 PRO2289Q9P1D8 64 aa5.84□□□□□ -1.47
CCDC40-216ENST00000576241 LINC00643Q86TS7 51 aa5.82□□□□□ -1.48
CCDC40-216ENST00000576241 MP68P56378 58 aa5.81□□□□□ -1.48
CCDC40-216ENST00000576241 LCE1AQ5T7P2 110 aa5.8□□□□□ -1.48
CCDC40-216ENST00000576241 SPRR2DP22532 72 aa5.78□□□□□ -1.48
CCDC40-216ENST00000576241 PLAC4Q8WY50 150 aa5.78□□□□□ -1.48
CCDC40-216ENST00000576241 C20orf197Q8N268 126 aa5.76□□□□□ -1.49
CCDC40-216ENST00000576241 R4GN34 69 aa5.76□□□□□ -1.49
CCDC40-216ENST00000576241 MT1XP80297 61 aa5.75□□□□□ -1.49
CCDC40-216ENST00000576241 OCR1Q9BZK8 76 aa5.75□□□□□ -1.49
CCDC40-216ENST00000576241 H3BPC8 53 aa5.7□□□□□ -1.5
CCDC40-216ENST00000576241 M0QZ58 72 aa5.7□□□□□ -1.5
CCDC40-216ENST00000576241 P0C880 135 aa5.7□□□□□ -1.5
CCDC40-216ENST00000576241 SCGB1A1P11684 91 aa5.7□□□□□ -1.5
CCDC40-216ENST00000576241 LCE3BQ5TA77 95 aa5.69□□□□□ -1.5
CCDC40-216ENST00000576241 KRTAP8-1Q8IUC2 63 aa5.68□□□□□ -1.5
CCDC40-216ENST00000576241 DMAC1Q96GE9 116 aa5.67□□□□□ -1.5
CCDC40-216ENST00000576241 KRTAP12-2P59991 146 aa5.65□□□□□ -1.5
CCDC40-216ENST00000576241 LINC01554Q52M75 96 aa5.64□□□□□ -1.51
CCDC40-216ENST00000576241 KRTAP3-2Q9BYR7 98 aa5.64□□□□□ -1.51
CCDC40-216ENST00000576241 MT-ATP8P03928 68 aa5.63□□□□□ -1.51
CCDC40-216ENST00000576241 DSTQ03001 7570 aaKnown RBP5.59□□□□□ -1.51
CCDC40-216ENST00000576241 TRAV7A0A075B6U4 112 aa5.57□□□□□ -1.52
CCDC40-216ENST00000576241 KRTAP4-8A0A0G2JLE6 195 aa5.53□□□□□ -1.52
CCDC40-216ENST00000576241 ACYP2P14621 99 aa5.53□□□□□ -1.52
CCDC40-216ENST00000576241 KRTAP4-9Q9BYQ8 210 aa5.53□□□□□ -1.52
CCDC40-216ENST00000576241 KRTAP4-8Q9BYQ9 185 aa5.53□□□□□ -1.52
CCDC40-216ENST00000576241 SPTSSBQ8NFR3 76 aa5.52□□□□□ -1.53
CCDC40-216ENST00000576241 PCP4P48539 62 aa5.48□□□□□ -1.53
CCDC40-216ENST00000576241 KRTAP10-7P60409 375 aaPredicted RBP5.48□□□□□ -1.53
CCDC40-216ENST00000576241 SMIM20Q8N5G0 67 aa5.48□□□□□ -1.53
CCDC40-216ENST00000576241 CHKB-CPT1BH3BT56 60 aa5.46□□□□□ -1.54
CCDC40-216ENST00000576241 KRTAP10-12P60413 245 aa5.46□□□□□ -1.54
CCDC40-216ENST00000576241 ANAPC13Q9BS18 74 aa5.44□□□□□ -1.54
CCDC40-216ENST00000576241 SERP2Q8N6R1 65 aa5.41□□□□□ -1.54
CCDC40-216ENST00000576241 COX7CP15954 63 aa5.38□□□□□ -1.55
CCDC40-216ENST00000576241 SNURFQ9Y675 71 aa5.32□□□□□ -1.56
CCDC40-216ENST00000576241 HMCN1Q96RW7 5635 aa5.32□□□□□ -1.56
CCDC40-216ENST00000576241 LCE1DQ5T752 114 aa5.29□□□□□ -1.56
CCDC40-216ENST00000576241 KRTAP5-10Q6L8G5 202 aa5.29□□□□□ -1.56
CCDC40-216ENST00000576241 CAMK2N1Q7Z7J9 78 aa5.29□□□□□ -1.56
CCDC40-216ENST00000576241 SPANXA2-OT1Q8N9U9 137 aa5.28□□□□□ -1.56
CCDC40-216ENST00000576241 AHNAK2Q8IVF2 5795 aa5.28□□□□□ -1.56
CCDC40-216ENST00000576241 CCDC179H3BU77 68 aa5.27□□□□□ -1.57
CCDC40-216ENST00000576241 KRTAP13-4Q3LI77 160 aa5.26□□□□□ -1.57
CCDC40-216ENST00000576241 TMEM258P61165 79 aa5.21□□□□□ -1.58
CCDC40-216ENST00000576241 ATP5EP56381 51 aaPredicted RBP5.18□□□□□ -1.58
CCDC40-216ENST00000576241 H7BZZ5 65 aa5.17□□□□□ -1.58
CCDC40-216ENST00000576241 KRTAP5-7Q6L8G8 165 aa5.17□□□□□ -1.58
CCDC40-216ENST00000576241 SEC61GP60059 68 aa5.16□□□□□ -1.58
CCDC40-216ENST00000576241 MT4P47944 62 aa5.15□□□□□ -1.59
CCDC40-216ENST00000576241 COA5Q86WW8 74 aa5.15□□□□□ -1.59
CCDC40-216ENST00000576241 SERP1Q9Y6X1 66 aa5.14□□□□□ -1.59
CCDC40-216ENST00000576241 A0A0D9SG42 100 aa5.13□□□□□ -1.59
CCDC40-216ENST00000576241 KRTAP19-7Q3SYF9 63 aa5.13□□□□□ -1.59
CCDC40-216ENST00000576241 CYSTM1Q9H1C7 97 aa5.13□□□□□ -1.59
CCDC40-216ENST00000576241 LCE5AQ5TCM9 118 aa5.12□□□□□ -1.59
CCDC40-216ENST00000576241 MT1EP04732 61 aa5.1□□□□□ -1.59
CCDC40-216ENST00000576241 KRTAP19-3Q7Z4W3 81 aa5.1□□□□□ -1.59
CCDC40-216ENST00000576241 RPS28P62857 69 aaKnown RBP5.08□□□□□ -1.6
CCDC40-216ENST00000576241 SPRR5A0A1B0GTR4 108 aa5.07□□□□□ -1.6
CCDC40-216ENST00000576241 SPATA8Q6RVD6 105 aa5.07□□□□□ -1.6
CCDC40-216ENST00000576241 SPINT4Q6UDR6 99 aa5.07□□□□□ -1.6
CCDC40-216ENST00000576241 A0A1B0GU33 70 aa5.04□□□□□ -1.6
CCDC40-216ENST00000576241 LCE4AQ5TA78 99 aa5.04□□□□□ -1.6
CCDC40-216ENST00000576241 KRTAP12-1P59990 96 aa4.99□□□□□ -1.61
CCDC40-216ENST00000576241 KRTAP5-3Q6L8H2 238 aa4.99□□□□□ -1.61
CCDC40-216ENST00000576241 KRTAP19-5Q3LI72 72 aa4.98□□□□□ -1.61
CCDC40-216ENST00000576241 MT1GP13640 62 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms