RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 SPACA4Q8TDM5 124 aa3.92□□□□□ -1.78
NUP88-206ENST00000573169 A0A1B0GVX0 72 aa3.91□□□□□ -1.78
NUP88-206ENST00000573169 HRES1P13985 223 aa3.91□□□□□ -1.78
NUP88-206ENST00000573169 KRTAP13-3Q3SY46 172 aa3.91□□□□□ -1.78
NUP88-206ENST00000573169 TNXBP22105 4242 aa3.91□□□□□ -1.78
NUP88-206ENST00000573169 C7orf65Q6ZTY9 151 aa3.9□□□□□ -1.79
NUP88-206ENST00000573169 RBM12B-AS1Q9P1G2 102 aa3.9□□□□□ -1.79
NUP88-206ENST00000573169 MRPL34Q9BQ48 92 aaKnown RBP3.89□□□□□ -1.79
NUP88-206ENST00000573169 SPTSSBQ8NFR3 76 aa3.87□□□□□ -1.79
NUP88-206ENST00000573169 ZNF706Q9Y5V0 76 aaPredicted RBP3.87□□□□□ -1.79
NUP88-206ENST00000573169 LRP2P98164 4655 aa3.86□□□□□ -1.79
NUP88-206ENST00000573169 SPINK7P58062 85 aa3.86□□□□□ -1.79
NUP88-206ENST00000573169 PCOTHQ58A44 107 aa3.86□□□□□ -1.79
NUP88-206ENST00000573169 SPAG11AQ6PDA7 123 aa3.86□□□□□ -1.79
NUP88-206ENST00000573169 PRR26Q8N8Z3 221 aa3.86□□□□□ -1.79
NUP88-206ENST00000573169 RNF213Q63HN8 5207 aa3.85□□□□□ -1.79
NUP88-206ENST00000573169 KRTAP10-8P60410 259 aa3.84□□□□□ -1.79
NUP88-206ENST00000573169 C8orf87E5RJ46 101 aa3.83□□□□□ -1.8
NUP88-206ENST00000573169 ACYP2P14621 99 aa3.83□□□□□ -1.8
NUP88-206ENST00000573169 DMAC1Q96GE9 116 aa3.83□□□□□ -1.8
NUP88-206ENST00000573169 IGHV6-1A0A0B4J1U7 121 aa3.82□□□□□ -1.8
NUP88-206ENST00000573169 IGKV2-30P06310 120 aa3.82□□□□□ -1.8
NUP88-206ENST00000573169 SPATA8Q6RVD6 105 aa3.82□□□□□ -1.8
NUP88-206ENST00000573169 SPINK6Q6UWN8 80 aa3.82□□□□□ -1.8
NUP88-206ENST00000573169 PSORS1C2Q9UIG4 136 aa3.81□□□□□ -1.8
NUP88-206ENST00000573169 ZNF861PO60384 105 aa3.8□□□□□ -1.8
NUP88-206ENST00000573169 Q5W150 140 aa3.8□□□□□ -1.8
NUP88-206ENST00000573169 NOTCH2NLQ7Z3S9 236 aa3.8□□□□□ -1.8
NUP88-206ENST00000573169 LPAP08519 4548 aa3.8□□□□□ -1.8
NUP88-206ENST00000573169 IGLV9-49A0A0B4J1Y8 123 aa3.79□□□□□ -1.8
NUP88-206ENST00000573169 SSBP3-AS1Q7Z2R9 100 aa3.78□□□□□ -1.8
NUP88-206ENST00000573169 IGLV7-43P04211 117 aa3.76□□□□□ -1.81
NUP88-206ENST00000573169 LINC00313P59037 77 aa3.76□□□□□ -1.81
NUP88-206ENST00000573169 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.76□□□□□ -1.81
NUP88-206ENST00000573169 A0A1B0GU69 56 aa3.73□□□□□ -1.81
NUP88-206ENST00000573169 KRTAP1-4P0C5Y4 121 aa3.73□□□□□ -1.81
NUP88-206ENST00000573169 KRTAP16-1A8MUX0 517 aa3.72□□□□□ -1.81
NUP88-206ENST00000573169 UQCR11O14957 56 aa3.72□□□□□ -1.81
NUP88-206ENST00000573169 MIR22HGQ0VDD5 57 aa3.71□□□□□ -1.82
NUP88-206ENST00000573169 IGKV2D-30A0A075B6S6 120 aa3.7□□□□□ -1.82
NUP88-206ENST00000573169 LINC01554Q52M75 96 aa3.7□□□□□ -1.82
NUP88-206ENST00000573169 SEC61BP60468 96 aaKnown RBP3.68□□□□□ -1.82
NUP88-206ENST00000573169 ANAPC11Q9NYG5 84 aa3.68□□□□□ -1.82
NUP88-206ENST00000573169 PRAC1Q96KF2 57 aa3.67□□□□□ -1.82
NUP88-206ENST00000573169 RETNLBQ9BQ08 111 aa3.67□□□□□ -1.82
NUP88-206ENST00000573169 ADM2Q7Z4H4 148 aa3.65□□□□□ -1.83
NUP88-206ENST00000573169 MUC2Q02817 5179 aa3.65□□□□□ -1.83
NUP88-206ENST00000573169 KRTAP13-2Q52LG2 175 aa3.64□□□□□ -1.83
NUP88-206ENST00000573169 TYMSOSQ8TAI1 123 aa3.63□□□□□ -1.83
NUP88-206ENST00000573169 MUC17Q685J3 4493 aa3.62□□□□□ -1.83
NUP88-206ENST00000573169 FAT4Q6V0I7 4981 aa3.62□□□□□ -1.83
NUP88-206ENST00000573169 RPS29P62273 56 aaKnown RBP3.6□□□□□ -1.83
NUP88-206ENST00000573169 A8MUU9 505 aa3.59□□□□□ -1.83
NUP88-206ENST00000573169 CSAG1Q6PB30 78 aa3.59□□□□□ -1.83
NUP88-206ENST00000573169 LINC00304Q8N9R0 145 aa3.59□□□□□ -1.83
NUP88-206ENST00000573169 SPINK1P00995 79 aa3.57□□□□□ -1.84
NUP88-206ENST00000573169 H0YAA0 97 aa3.55□□□□□ -1.84
NUP88-206ENST00000573169 KRTAP25-1Q3LHN0 102 aa3.54□□□□□ -1.84
NUP88-206ENST00000573169 TPRXLQ17RH7 258 aa3.53□□□□□ -1.84
NUP88-206ENST00000573169 A0A1B0GU33 70 aa3.52□□□□□ -1.85
NUP88-206ENST00000573169 H1FX-AS1Q4G0G2 97 aa3.52□□□□□ -1.85
NUP88-206ENST00000573169 KRTAP5-11Q6L8G4 156 aa3.52□□□□□ -1.85
NUP88-206ENST00000573169 C20orf166-AS1Q96NR2 134 aa3.52□□□□□ -1.85
NUP88-206ENST00000573169 KRTAP4-1Q9BYQ7 146 aa3.5□□□□□ -1.85
NUP88-206ENST00000573169 ROMO1P60602 79 aa3.47□□□□□ -1.85
NUP88-206ENST00000573169 K7ERS5 55 aa3.44□□□□□ -1.86
NUP88-206ENST00000573169 COX6B2Q6YFQ2 88 aa3.44□□□□□ -1.86
NUP88-206ENST00000573169 LCE1AQ5T7P2 110 aa3.43□□□□□ -1.86
NUP88-206ENST00000573169 KRTAP10-7P60409 375 aaPredicted RBP3.4□□□□□ -1.87
NUP88-206ENST00000573169 C9orf92A6NGG3 77 aa3.39□□□□□ -1.87
NUP88-206ENST00000573169 KRTAP10-6P60371 365 aaPredicted RBP3.39□□□□□ -1.87
NUP88-206ENST00000573169 KRTAP19-2Q3LHN2 52 aa3.39□□□□□ -1.87
NUP88-206ENST00000573169 RPL37P61927 97 aaKnown RBP3.38□□□□□ -1.87
NUP88-206ENST00000573169 FSIP2Q5CZC0 6907 aa3.36□□□□□ -1.87
NUP88-206ENST00000573169 MT1HP80294 61 aa3.36□□□□□ -1.87
NUP88-206ENST00000573169 P0C880 135 aa3.35□□□□□ -1.87
NUP88-206ENST00000573169 MT3P25713 68 aa3.35□□□□□ -1.87
NUP88-206ENST00000573169 CRCT1Q9UGL9 99 aa3.35□□□□□ -1.87
NUP88-206ENST00000573169 KRTAP13-4Q3LI77 160 aa3.31□□□□□ -1.88
NUP88-206ENST00000573169 FLGP20930 4061 aaPredicted RBP3.29□□□□□ -1.88
NUP88-206ENST00000573169 M0R2T5 61 aa3.28□□□□□ -1.88
NUP88-206ENST00000573169 CRIPTQ9P021 101 aa3.26□□□□□ -1.89
NUP88-206ENST00000573169 KRTAP5-9P26371 169 aa3.25□□□□□ -1.89
NUP88-206ENST00000573169 S4R3F8 94 aa3.25□□□□□ -1.89
NUP88-206ENST00000573169 KRTAP12-1P59990 96 aa3.23□□□□□ -1.89
NUP88-206ENST00000573169 KRTAP5-1Q6L8H4 278 aa3.23□□□□□ -1.89
NUP88-206ENST00000573169 M0QZ58 72 aa3.22□□□□□ -1.89
NUP88-206ENST00000573169 SPINT4Q6UDR6 99 aa3.22□□□□□ -1.89
NUP88-206ENST00000573169 KRTAP12-2P59991 146 aa3.21□□□□□ -1.9
NUP88-206ENST00000573169 A0A0D9SG42 100 aa3.19□□□□□ -1.9
NUP88-206ENST00000573169 C10orf95Q9H7T3 257 aa3.18□□□□□ -1.9
NUP88-206ENST00000573169 USH2AO75445 5202 aa3.18□□□□□ -1.9
NUP88-206ENST00000573169 SSPOA2VEC9 5147 aa3.17□□□□□ -1.9
NUP88-206ENST00000573169 NDUFAF8A1L188 74 aa3.17□□□□□ -1.9
NUP88-206ENST00000573169 KRTAP5-4Q6L8H1 288 aa3.17□□□□□ -1.9
NUP88-206ENST00000573169 KRTAP4-4Q9BYR3 166 aa3.16□□□□□ -1.9
NUP88-206ENST00000573169 KRTAP2-2Q9BYT5 123 aa3.16□□□□□ -1.9
NUP88-206ENST00000573169 MT2AP02795 61 aa3.12□□□□□ -1.91
NUP88-206ENST00000573169 MT1FP04733 61 aa3.1□□□□□ -1.91
NUP88-206ENST00000573169 FCGBPQ9Y6R7 5405 aaPredicted RBP3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms