RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 C8orf17Q9NRJ1 99 aa4.46□□□□□ -1.7
CIITA-208ENST00000572665 IGKV3D-7A0A0C4DH55 119 aa4.45□□□□□ -1.7
CIITA-208ENST00000572665 SSPOA2VEC9 5147 aa4.43□□□□□ -1.7
CIITA-208ENST00000572665 PRR15Q8IV56 129 aa4.43□□□□□ -1.7
CIITA-208ENST00000572665 BPY2O14599 106 aa4.42□□□□□ -1.7
CIITA-208ENST00000572665 UBL5Q9BZL1 73 aa4.42□□□□□ -1.7
CIITA-208ENST00000572665 K7EQZ3 153 aa4.41□□□□□ -1.7
CIITA-208ENST00000572665 KRTAP19-6Q3LI70 58 aa4.41□□□□□ -1.7
CIITA-208ENST00000572665 TMEM254Q8TBM7 123 aa4.41□□□□□ -1.7
CIITA-208ENST00000572665 MRPL34Q9BQ48 92 aaKnown RBP4.41□□□□□ -1.7
CIITA-208ENST00000572665 FCGBPQ9Y6R7 5405 aaPredicted RBP4.41□□□□□ -1.7
CIITA-208ENST00000572665 FAM240AA0A1B0GVK7 77 aa4.4□□□□□ -1.71
CIITA-208ENST00000572665 H1FX-AS1Q4G0G2 97 aa4.4□□□□□ -1.71
CIITA-208ENST00000572665 MMP24-AS1A0A0U1RRL7 71 aa4.39□□□□□ -1.71
CIITA-208ENST00000572665 NDUFS5O43920 106 aa4.39□□□□□ -1.71
CIITA-208ENST00000572665 ACYP1P07311 99 aa4.39□□□□□ -1.71
CIITA-208ENST00000572665 CAMK2N1Q7Z7J9 78 aa4.38□□□□□ -1.71
CIITA-208ENST00000572665 hDV103S1A0JD37 113 aa4.37□□□□□ -1.71
CIITA-208ENST00000572665 Q8N9L7 120 aa4.37□□□□□ -1.71
CIITA-208ENST00000572665 C7orf65Q6ZTY9 151 aa4.36□□□□□ -1.71
CIITA-208ENST00000572665 MACF1Q9UPN3 7388 aaKnown RBP4.33□□□□□ -1.72
CIITA-208ENST00000572665 ATP5EP2Q5VTU8 51 aa4.32□□□□□ -1.72
CIITA-208ENST00000572665 CASC2Q6XLA1 102 aa4.32□□□□□ -1.72
CIITA-208ENST00000572665 HCG22E2RYF7 251 aa4.31□□□□□ -1.72
CIITA-208ENST00000572665 SYNE2Q8WXH0 6885 aaKnown RBP4.31□□□□□ -1.72
CIITA-208ENST00000572665 KRTAP6-3Q3LI67 103 aa4.29□□□□□ -1.72
CIITA-208ENST00000572665 J3QR89 54 aa4.28□□□□□ -1.72
CIITA-208ENST00000572665 LINC00643Q86TS7 51 aa4.28□□□□□ -1.72
CIITA-208ENST00000572665 FAM236AA0A1B0GUQ0 79 aa4.27□□□□□ -1.73
CIITA-208ENST00000572665 FAM236BA0A1B0GV22 79 aa4.27□□□□□ -1.73
CIITA-208ENST00000572665 Q5W150 140 aa4.26□□□□□ -1.73
CIITA-208ENST00000572665 C4orf26Q17RF5 130 aa4.25□□□□□ -1.73
CIITA-208ENST00000572665 HIST1H4AP62805 103 aaKnown RBP4.23□□□□□ -1.73
CIITA-208ENST00000572665 C5orf47Q569G3 176 aa4.22□□□□□ -1.73
CIITA-208ENST00000572665 CSAG1Q6PB30 78 aa4.22□□□□□ -1.73
CIITA-208ENST00000572665 TP53AIP1Q9HCN2 124 aa4.22□□□□□ -1.73
CIITA-208ENST00000572665 S4R3F8 94 aa4.22□□□□□ -1.73
CIITA-208ENST00000572665 A6NN06 94 aa4.21□□□□□ -1.74
CIITA-208ENST00000572665 K7ERU9 68 aa4.21□□□□□ -1.74
CIITA-208ENST00000572665 Q5VV11 94 aa4.21□□□□□ -1.74
CIITA-208ENST00000572665 KRTAP5-1Q6L8H4 278 aa4.21□□□□□ -1.74
CIITA-208ENST00000572665 A0A087WVE0 104 aa4.2□□□□□ -1.74
CIITA-208ENST00000572665 C1orf64Q8NEQ6 169 aa4.19□□□□□ -1.74
CIITA-208ENST00000572665 TRAV22A0A0B4J277 110 aa4.15□□□□□ -1.75
CIITA-208ENST00000572665 SPRR2GQ9BYE4 73 aa4.15□□□□□ -1.75
CIITA-208ENST00000572665 IMUPQ9GZP8 106 aa4.15□□□□□ -1.75
CIITA-208ENST00000572665 UQCRQO14949 82 aa4.14□□□□□ -1.75
CIITA-208ENST00000572665 LCA10Q71F78 164 aa4.14□□□□□ -1.75
CIITA-208ENST00000572665 MT-ATP8P03928 68 aa4.13□□□□□ -1.75
CIITA-208ENST00000572665 KLKP1Q107X0 134 aa4.13□□□□□ -1.75
CIITA-208ENST00000572665 KRTAP19-8Q3LI54 63 aa4.13□□□□□ -1.75
CIITA-208ENST00000572665 LOC101927531A0A1B0GV80 90 aa4.12□□□□□ -1.75
CIITA-208ENST00000572665 MT1BP07438 61 aa4.12□□□□□ -1.75
CIITA-208ENST00000572665 CRIPTQ9P021 101 aa4.12□□□□□ -1.75
CIITA-208ENST00000572665 ATOX1O00244 68 aa4.11□□□□□ -1.75
CIITA-208ENST00000572665 CYP4F30PQ9H0H9 118 aa4.11□□□□□ -1.75
CIITA-208ENST00000572665 H0Y9P7 68 aa4.1□□□□□ -1.75
CIITA-208ENST00000572665 SCGB1A1P11684 91 aa4.06□□□□□ -1.76
CIITA-208ENST00000572665 KRTAP4-4Q9BYR3 166 aa4.06□□□□□ -1.76
CIITA-208ENST00000572665 MP68P56378 58 aa4.05□□□□□ -1.76
CIITA-208ENST00000572665 KRTAP5-4Q6L8H1 288 aa4.05□□□□□ -1.76
CIITA-208ENST00000572665 H3BPC8 53 aa4.04□□□□□ -1.76
CIITA-208ENST00000572665 KRTAP20-1Q3LI63 56 aa4.04□□□□□ -1.76
CIITA-208ENST00000572665 LINC00208Q96KT6 92 aa4.04□□□□□ -1.76
CIITA-208ENST00000572665 NEBP20929 6669 aa4.04□□□□□ -1.76
CIITA-208ENST00000572665 NDUFC1O43677 76 aa4.03□□□□□ -1.76
CIITA-208ENST00000572665 KRTAP5-9P26371 169 aa4.03□□□□□ -1.76
CIITA-208ENST00000572665 SMIM20Q8N5G0 67 aa4.02□□□□□ -1.77
CIITA-208ENST00000572665 TRAV7A0A075B6U4 112 aa4.01□□□□□ -1.77
CIITA-208ENST00000572665 H0YAA0 97 aa4.01□□□□□ -1.77
CIITA-208ENST00000572665 PRO2289Q9P1D8 64 aa4□□□□□ -1.77
CIITA-208ENST00000572665 A8MUN3 132 aa3.98□□□□□ -1.77
CIITA-208ENST00000572665 MUC12Q9UKN1 5478 aa3.96□□□□□ -1.78
CIITA-208ENST00000572665 SERP2Q8N6R1 65 aa3.94□□□□□ -1.78
CIITA-208ENST00000572665 PLAC4Q8WY50 150 aa3.94□□□□□ -1.78
CIITA-208ENST00000572665 ADM2Q7Z4H4 148 aa3.93□□□□□ -1.78
CIITA-208ENST00000572665 C20orf197Q8N268 126 aa3.92□□□□□ -1.78
CIITA-208ENST00000572665 DMAC1Q96GE9 116 aa3.92□□□□□ -1.78
CIITA-208ENST00000572665 KRTAP2-3P0C7H8 128 aa3.91□□□□□ -1.78
CIITA-208ENST00000572665 LCE3AQ5TA76 89 aa3.91□□□□□ -1.78
CIITA-208ENST00000572665 KRTAP2-4Q9BYR9 128 aa3.91□□□□□ -1.78
CIITA-208ENST00000572665 SPRR2FQ96RM1 72 aa3.89□□□□□ -1.79
CIITA-208ENST00000572665 SNURFQ9Y675 71 aa3.89□□□□□ -1.79
CIITA-208ENST00000572665 R4GN34 69 aa3.89□□□□□ -1.79
CIITA-208ENST00000572665 COX7CP15954 63 aa3.87□□□□□ -1.79
CIITA-208ENST00000572665 SPRR2EP22531 72 aa3.87□□□□□ -1.79
CIITA-208ENST00000572665 SPRR2BP35325 72 aa3.87□□□□□ -1.79
CIITA-208ENST00000572665 SPRR2AP35326 72 aa3.87□□□□□ -1.79
CIITA-208ENST00000572665 KRTAP8-1Q8IUC2 63 aa3.86□□□□□ -1.79
CIITA-208ENST00000572665 KMT2DO14686 5537 aa3.85□□□□□ -1.79
CIITA-208ENST00000572665 SPANXA2-OT1Q8N9U9 137 aa3.85□□□□□ -1.79
CIITA-208ENST00000572665 LCE3DQ9BYE3 92 aa3.85□□□□□ -1.79
CIITA-208ENST00000572665 SPRR5A0A1B0GTR4 108 aa3.84□□□□□ -1.79
CIITA-208ENST00000572665 MT1XP80297 61 aa3.84□□□□□ -1.79
CIITA-208ENST00000572665 ACYP2P14621 99 aa3.83□□□□□ -1.8
CIITA-208ENST00000572665 MDN1Q9NU22 5596 aa3.83□□□□□ -1.8
CIITA-208ENST00000572665 SMIM26A0A096LP01 95 aa3.82□□□□□ -1.8
CIITA-208ENST00000572665 M0QZ58 72 aa3.82□□□□□ -1.8
CIITA-208ENST00000572665 ANAPC13Q9BS18 74 aa3.81□□□□□ -1.8
CIITA-208ENST00000572665 CYSTM1Q9H1C7 97 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms