RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 TP53AIP1Q9HCN2 124 aa3.7□□□□□ -1.82
VPS53-213ENST00000572334 LINC01558Q9Y6Z2 57 aa3.7□□□□□ -1.82
VPS53-213ENST00000572334 FLGP20930 4061 aaPredicted RBP3.7□□□□□ -1.82
VPS53-213ENST00000572334 SEC61BP60468 96 aaKnown RBP3.69□□□□□ -1.82
VPS53-213ENST00000572334 LCE5AQ5TCM9 118 aa3.69□□□□□ -1.82
VPS53-213ENST00000572334 H0Y9P7 68 aa3.68□□□□□ -1.82
VPS53-213ENST00000572334 Q8N9L7 120 aa3.68□□□□□ -1.82
VPS53-213ENST00000572334 ST20-AS1Q8NBB2 130 aa3.68□□□□□ -1.82
VPS53-213ENST00000572334 C8orf87E5RJ46 101 aa3.67□□□□□ -1.82
VPS53-213ENST00000572334 MT1HP80294 61 aa3.67□□□□□ -1.82
VPS53-213ENST00000572334 FSIP2Q5CZC0 6907 aa3.67□□□□□ -1.82
VPS53-213ENST00000572334 SPRR1BP22528 89 aa3.66□□□□□ -1.82
VPS53-213ENST00000572334 CRCT1Q9UGL9 99 aa3.66□□□□□ -1.82
VPS53-213ENST00000572334 LINC01554Q52M75 96 aa3.65□□□□□ -1.83
VPS53-213ENST00000572334 COA5Q86WW8 74 aa3.65□□□□□ -1.83
VPS53-213ENST00000572334 DSCR10P59022 87 aa3.64□□□□□ -1.83
VPS53-213ENST00000572334 KRTAP9-8Q9BYQ0 159 aa3.64□□□□□ -1.83
VPS53-213ENST00000572334 K7EQZ3 153 aa3.63□□□□□ -1.83
VPS53-213ENST00000572334 PCOTHQ58A44 107 aa3.63□□□□□ -1.83
VPS53-213ENST00000572334 DEFB105AQ8NG35 78 aa3.63□□□□□ -1.83
VPS53-213ENST00000572334 C9orf92A6NGG3 77 aa3.62□□□□□ -1.83
VPS53-213ENST00000572334 IGLV8-61A0A075B6I0 122 aa3.61□□□□□ -1.83
VPS53-213ENST00000572334 A0A1W2PNM2 257 aa3.61□□□□□ -1.83
VPS53-213ENST00000572334 KRTAP10-6P60371 365 aaPredicted RBP3.61□□□□□ -1.83
VPS53-213ENST00000572334 KRTAP9-7A8MTY7 169 aa3.6□□□□□ -1.83
VPS53-213ENST00000572334 A8MWP4 228 aa3.6□□□□□ -1.83
VPS53-213ENST00000572334 H3BS24 57 aa3.6□□□□□ -1.83
VPS53-213ENST00000572334 A0A0G2JQZ4 141 aa3.59□□□□□ -1.83
VPS53-213ENST00000572334 WFDC13Q8IUB5 93 aa3.59□□□□□ -1.83
VPS53-213ENST00000572334 ACYP2P14621 99 aa3.58□□□□□ -1.84
VPS53-213ENST00000572334 LINC00313P59037 77 aa3.57□□□□□ -1.84
VPS53-213ENST00000572334 RPL37P61927 97 aaKnown RBP3.56□□□□□ -1.84
VPS53-213ENST00000572334 KRTAP19-4Q3LI73 84 aa3.56□□□□□ -1.84
VPS53-213ENST00000572334 A0A087WSZ3 146 aa3.54□□□□□ -1.84
VPS53-213ENST00000572334 UQCR11O14957 56 aa3.54□□□□□ -1.84
VPS53-213ENST00000572334 A0A1B0GU69 56 aa3.53□□□□□ -1.84
VPS53-213ENST00000572334 IGFL1Q6UW32 110 aa3.53□□□□□ -1.84
VPS53-213ENST00000572334 SPATA8Q6RVD6 105 aa3.52□□□□□ -1.85
VPS53-213ENST00000572334 KRTAP9-3Q9BYQ3 159 aa3.52□□□□□ -1.85
VPS53-213ENST00000572334 SPINK7P58062 85 aa3.5□□□□□ -1.85
VPS53-213ENST00000572334 MIR22HGQ0VDD5 57 aa3.5□□□□□ -1.85
VPS53-213ENST00000572334 LINC00472Q9H8W2 130 aa3.5□□□□□ -1.85
VPS53-213ENST00000572334 MMP24-AS1A0A0U1RRL7 71 aa3.49□□□□□ -1.85
VPS53-213ENST00000572334 M0R2T5 61 aa3.49□□□□□ -1.85
VPS53-213ENST00000572334 HRES1P13985 223 aa3.49□□□□□ -1.85
VPS53-213ENST00000572334 A8MU10 97 aa3.48□□□□□ -1.85
VPS53-213ENST00000572334 COX6B2Q6YFQ2 88 aa3.48□□□□□ -1.85
VPS53-213ENST00000572334 MRPL34Q9BQ48 92 aaKnown RBP3.48□□□□□ -1.85
VPS53-213ENST00000572334 DEFB116Q30KQ4 102 aa3.47□□□□□ -1.85
VPS53-213ENST00000572334 NOTCH2NLQ7Z3S9 236 aa3.47□□□□□ -1.85
VPS53-213ENST00000572334 USH2AO75445 5202 aa3.46□□□□□ -1.86
VPS53-213ENST00000572334 SSPOA2VEC9 5147 aa3.46□□□□□ -1.86
VPS53-213ENST00000572334 C8orf17Q9NRJ1 99 aa3.46□□□□□ -1.86
VPS53-213ENST00000572334 A0A1B0GVX0 72 aa3.45□□□□□ -1.86
VPS53-213ENST00000572334 K7ERS5 55 aa3.44□□□□□ -1.86
VPS53-213ENST00000572334 DMAC1Q96GE9 116 aa3.44□□□□□ -1.86
VPS53-213ENST00000572334 IGHV6-1A0A0B4J1U7 121 aa3.43□□□□□ -1.86
VPS53-213ENST00000572334 C20orf166-AS1Q96NR2 134 aa3.43□□□□□ -1.86
VPS53-213ENST00000572334 A8MUU9 505 aa3.42□□□□□ -1.86
VPS53-213ENST00000572334 Q96NJ1 140 aa3.42□□□□□ -1.86
VPS53-213ENST00000572334 KRTAP16-1A8MUX0 517 aa3.41□□□□□ -1.86
VPS53-213ENST00000572334 PRAC1Q96KF2 57 aa3.41□□□□□ -1.86
VPS53-213ENST00000572334 CSAG1Q6PB30 78 aa3.4□□□□□ -1.87
VPS53-213ENST00000572334 FCGBPQ9Y6R7 5405 aaPredicted RBP3.4□□□□□ -1.87
VPS53-213ENST00000572334 MT2AP02795 61 aa3.39□□□□□ -1.87
VPS53-213ENST00000572334 MT1FP04733 61 aa3.37□□□□□ -1.87
VPS53-213ENST00000572334 ROMO1P60602 79 aa3.37□□□□□ -1.87
VPS53-213ENST00000572334 KRTAP25-1Q3LHN0 102 aa3.36□□□□□ -1.87
VPS53-213ENST00000572334 ADM2Q7Z4H4 148 aa3.33□□□□□ -1.88
VPS53-213ENST00000572334 IGKV2-30P06310 120 aa3.31□□□□□ -1.88
VPS53-213ENST00000572334 KRTAP10-10P60014 251 aa3.29□□□□□ -1.88
VPS53-213ENST00000572334 MACF1Q9UPN3 7388 aaKnown RBP3.28□□□□□ -1.88
VPS53-213ENST00000572334 Q5W150 140 aa3.28□□□□□ -1.88
VPS53-213ENST00000572334 IGKV2D-30A0A075B6S6 120 aa3.27□□□□□ -1.89
VPS53-213ENST00000572334 SYNE2Q8WXH0 6885 aaKnown RBP3.26□□□□□ -1.89
VPS53-213ENST00000572334 KRTAP19-6Q3LI70 58 aa3.26□□□□□ -1.89
VPS53-213ENST00000572334 A0A1B0GU33 70 aa3.24□□□□□ -1.89
VPS53-213ENST00000572334 SPINT4Q6UDR6 99 aa3.22□□□□□ -1.89
VPS53-213ENST00000572334 H1FX-AS1Q4G0G2 97 aa3.19□□□□□ -1.9
VPS53-213ENST00000572334 KRTAP6-3Q3LI67 103 aa3.16□□□□□ -1.9
VPS53-213ENST00000572334 CRIPTQ9P021 101 aa3.16□□□□□ -1.9
VPS53-213ENST00000572334 A0A0A0MQY5 61 aa3.15□□□□□ -1.91
VPS53-213ENST00000572334 H0YAA0 97 aa3.15□□□□□ -1.91
VPS53-213ENST00000572334 P0C880 135 aa3.11□□□□□ -1.91
VPS53-213ENST00000572334 MUC12Q9UKN1 5478 aa3.08□□□□□ -1.92
VPS53-213ENST00000572334 NDUFAF8A1L188 74 aa3.08□□□□□ -1.92
VPS53-213ENST00000572334 MT1BP07438 61 aa3.08□□□□□ -1.92
VPS53-213ENST00000572334 LUZP6Q538Z0 58 aa3.07□□□□□ -1.92
VPS53-213ENST00000572334 NEBP20929 6669 aa3.07□□□□□ -1.92
VPS53-213ENST00000572334 KRTAP15-1Q3LI76 137 aa3.05□□□□□ -1.92
VPS53-213ENST00000572334 KRTAP3-1Q9BYR8 98 aa3.05□□□□□ -1.92
VPS53-213ENST00000572334 KRTAP19-8Q3LI54 63 aa3.03□□□□□ -1.92
VPS53-213ENST00000572334 SPRR2GQ9BYE4 73 aa3.02□□□□□ -1.93
VPS53-213ENST00000572334 KRTAP10-5P60370 271 aa3□□□□□ -1.93
VPS53-213ENST00000572334 CAMK2N1Q7Z7J9 78 aa3□□□□□ -1.93
VPS53-213ENST00000572334 KRTAP5-9P26371 169 aa2.99□□□□□ -1.93
VPS53-213ENST00000572334 KMT2DO14686 5537 aa2.97□□□□□ -1.93
VPS53-213ENST00000572334 MDN1Q9NU22 5596 aa2.96□□□□□ -1.94
VPS53-213ENST00000572334 KRTAP20-1Q3LI63 56 aa2.96□□□□□ -1.94
VPS53-213ENST00000572334 S4R3F8 94 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms