RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 TRAV7A0A075B6U4 112 aa3.57□□□□□ -1.84
CHD3-213ENST00000571249 RPS29P62273 56 aaKnown RBP3.57□□□□□ -1.84
CHD3-213ENST00000571249 SSBP3-AS1Q7Z2R9 100 aa3.57□□□□□ -1.84
CHD3-213ENST00000571249 LCE4AQ5TA78 99 aa3.56□□□□□ -1.84
CHD3-213ENST00000571249 J3KT08 172 aa3.55□□□□□ -1.84
CHD3-213ENST00000571249 LCE5AQ5TCM9 118 aa3.55□□□□□ -1.84
CHD3-213ENST00000571249 KRTAP4-7Q9BYR0 210 aa3.55□□□□□ -1.84
CHD3-213ENST00000571249 C8orf17Q9NRJ1 99 aa3.55□□□□□ -1.84
CHD3-213ENST00000571249 SS18L2Q9UHA2 77 aa3.55□□□□□ -1.84
CHD3-213ENST00000571249 A0A1B0GVX0 72 aa3.54□□□□□ -1.84
CHD3-213ENST00000571249 KRTAP16-1A8MUX0 517 aa3.54□□□□□ -1.84
CHD3-213ENST00000571249 A8MWP4 228 aa3.54□□□□□ -1.84
CHD3-213ENST00000571249 K7EQZ3 153 aa3.54□□□□□ -1.84
CHD3-213ENST00000571249 PMAIP1Q13794 54 aa3.54□□□□□ -1.84
CHD3-213ENST00000571249 MOBPQ13875 183 aa3.54□□□□□ -1.84
CHD3-213ENST00000571249 C9orf153Q5TBE3 101 aa3.54□□□□□ -1.84
CHD3-213ENST00000571249 Q8N9L7 120 aa3.54□□□□□ -1.84
CHD3-213ENST00000571249 Q96NJ1 140 aa3.54□□□□□ -1.84
CHD3-213ENST00000571249 RPL37P61927 97 aaKnown RBP3.53□□□□□ -1.84
CHD3-213ENST00000571249 Q5XG85 94 aa3.53□□□□□ -1.84
CHD3-213ENST00000571249 PRR15Q8IV56 129 aa3.53□□□□□ -1.84
CHD3-213ENST00000571249 HCG22E2RYF7 251 aa3.52□□□□□ -1.85
CHD3-213ENST00000571249 KLKP1Q107X0 134 aa3.51□□□□□ -1.85
CHD3-213ENST00000571249 LCE1DQ5T752 114 aa3.51□□□□□ -1.85
CHD3-213ENST00000571249 NDUFB1O75438 58 aa3.49□□□□□ -1.85
CHD3-213ENST00000571249 SPRR2EP22531 72 aa3.49□□□□□ -1.85
CHD3-213ENST00000571249 SPRR2BP35325 72 aa3.49□□□□□ -1.85
CHD3-213ENST00000571249 SPRR2AP35326 72 aa3.49□□□□□ -1.85
CHD3-213ENST00000571249 DEFB116Q30KQ4 102 aa3.49□□□□□ -1.85
CHD3-213ENST00000571249 MMP24-AS1A0A0U1RRL7 71 aa3.48□□□□□ -1.85
CHD3-213ENST00000571249 LUZP6Q538Z0 58 aa3.48□□□□□ -1.85
CHD3-213ENST00000571249 CYSTM1Q9H1C7 97 aa3.48□□□□□ -1.85
CHD3-213ENST00000571249 NDUFC1O43677 76 aa3.47□□□□□ -1.85
CHD3-213ENST00000571249 TMEM258P61165 79 aa3.47□□□□□ -1.85
CHD3-213ENST00000571249 HRCT1Q6UXD1 115 aa3.47□□□□□ -1.85
CHD3-213ENST00000571249 CASC2Q6XLA1 102 aa3.47□□□□□ -1.85
CHD3-213ENST00000571249 C20orf197Q8N268 126 aa3.47□□□□□ -1.85
CHD3-213ENST00000571249 TMEM254Q8TBM7 123 aa3.47□□□□□ -1.85
CHD3-213ENST00000571249 DSTQ03001 7570 aaKnown RBP3.47□□□□□ -1.85
CHD3-213ENST00000571249 ZCCHC13Q8WW36 166 aaKnown RBP3.46□□□□□ -1.86
CHD3-213ENST00000571249 FAM236DA0A1B0GTK5 79 aa3.45□□□□□ -1.86
CHD3-213ENST00000571249 hDV103S1A0JD37 113 aa3.45□□□□□ -1.86
CHD3-213ENST00000571249 H7BZZ5 65 aa3.45□□□□□ -1.86
CHD3-213ENST00000571249 FAM236CP0DP71 79 aa3.45□□□□□ -1.86
CHD3-213ENST00000571249 WFDC13Q8IUB5 93 aa3.45□□□□□ -1.86
CHD3-213ENST00000571249 LIMD2Q9BT23 127 aa3.45□□□□□ -1.86
CHD3-213ENST00000571249 H3BPC8 53 aa3.44□□□□□ -1.86
CHD3-213ENST00000571249 TP53AIP1Q9HCN2 124 aa3.44□□□□□ -1.86
CHD3-213ENST00000571249 K7ERS5 55 aa3.43□□□□□ -1.86
CHD3-213ENST00000571249 LINC00313P59037 77 aa3.43□□□□□ -1.86
CHD3-213ENST00000571249 RPS28P62857 69 aaKnown RBP3.43□□□□□ -1.86
CHD3-213ENST00000571249 KRTAP4-9Q9BYQ8 210 aa3.43□□□□□ -1.86
CHD3-213ENST00000571249 MRPL34Q9BQ48 92 aaKnown RBP3.42□□□□□ -1.86
CHD3-213ENST00000571249 SNURFQ9Y675 71 aa3.42□□□□□ -1.86
CHD3-213ENST00000571249 ATP5EP56381 51 aaPredicted RBP3.41□□□□□ -1.86
CHD3-213ENST00000571249 C20orf166-AS1Q96NR2 134 aa3.41□□□□□ -1.86
CHD3-213ENST00000571249 KRTAP4-2Q9BYR5 136 aa3.4□□□□□ -1.87
CHD3-213ENST00000571249 TRAV22A0A0B4J277 110 aa3.39□□□□□ -1.87
CHD3-213ENST00000571249 A6NN06 94 aa3.39□□□□□ -1.87
CHD3-213ENST00000571249 H0Y9P7 68 aa3.39□□□□□ -1.87
CHD3-213ENST00000571249 ATP11AUNQ6ZP68 121 aa3.38□□□□□ -1.87
CHD3-213ENST00000571249 SPRR2FQ96RM1 72 aa3.38□□□□□ -1.87
CHD3-213ENST00000571249 SPRR2DP22532 72 aa3.37□□□□□ -1.87
CHD3-213ENST00000571249 LINC00208Q96KT6 92 aa3.37□□□□□ -1.87
CHD3-213ENST00000571249 LCE1AQ5T7P2 110 aa3.36□□□□□ -1.87
CHD3-213ENST00000571249 SPANXA2-OT1Q8N9U9 137 aa3.36□□□□□ -1.87
CHD3-213ENST00000571249 C1orf64Q8NEQ6 169 aa3.36□□□□□ -1.87
CHD3-213ENST00000571249 CYP4F30PQ9H0H9 118 aa3.36□□□□□ -1.87
CHD3-213ENST00000571249 SERP1Q9Y6X1 66 aa3.36□□□□□ -1.87
CHD3-213ENST00000571249 AHNAK2Q8IVF2 5795 aa3.34□□□□□ -1.87
CHD3-213ENST00000571249 LOC101927531A0A1B0GV80 90 aa3.34□□□□□ -1.87
CHD3-213ENST00000571249 Q5W150 140 aa3.34□□□□□ -1.87
CHD3-213ENST00000571249 A8MUN3 132 aa3.33□□□□□ -1.88
CHD3-213ENST00000571249 HMCN1Q96RW7 5635 aa3.33□□□□□ -1.88
CHD3-213ENST00000571249 MT3P25713 68 aa3.31□□□□□ -1.88
CHD3-213ENST00000571249 A6NED7 52 aa3.3□□□□□ -1.88
CHD3-213ENST00000571249 A8MUU9 505 aa3.3□□□□□ -1.88
CHD3-213ENST00000571249 KRTAP5-10Q6L8G5 202 aa3.29□□□□□ -1.88
CHD3-213ENST00000571249 KRTAP4-11Q9BYQ6 195 aa3.29□□□□□ -1.88
CHD3-213ENST00000571249 SPRR5A0A1B0GTR4 108 aa3.26□□□□□ -1.89
CHD3-213ENST00000571249 ADM2Q7Z4H4 148 aa3.25□□□□□ -1.89
CHD3-213ENST00000571249 HRES1P13985 223 aa3.24□□□□□ -1.89
CHD3-213ENST00000571249 KRTAP10-5P60370 271 aa3.23□□□□□ -1.89
CHD3-213ENST00000571249 DMAC1Q96GE9 116 aa3.23□□□□□ -1.89
CHD3-213ENST00000571249 Q1T7F1 81 aa3.22□□□□□ -1.89
CHD3-213ENST00000571249 KRTAP5-7Q6L8G8 165 aa3.22□□□□□ -1.89
CHD3-213ENST00000571249 C7orf65Q6ZTY9 151 aa3.22□□□□□ -1.89
CHD3-213ENST00000571249 COA5Q86WW8 74 aa3.22□□□□□ -1.89
CHD3-213ENST00000571249 LCA10Q71F78 164 aa3.21□□□□□ -1.9
CHD3-213ENST00000571249 KTN1-AS1Q86SY8 53 aa3.21□□□□□ -1.9
CHD3-213ENST00000571249 MT1BP07438 61 aa3.2□□□□□ -1.9
CHD3-213ENST00000571249 ACYP2P14621 99 aa3.2□□□□□ -1.9
CHD3-213ENST00000571249 SPINK7P58062 85 aa3.16□□□□□ -1.9
CHD3-213ENST00000571249 LINC01558Q9Y6Z2 57 aa3.15□□□□□ -1.91
CHD3-213ENST00000571249 LINC01554Q52M75 96 aa3.14□□□□□ -1.91
CHD3-213ENST00000571249 Q5VV11 94 aa3.13□□□□□ -1.91
CHD3-213ENST00000571249 KRTAP5-3Q6L8H2 238 aa3.13□□□□□ -1.91
CHD3-213ENST00000571249 SPINT4Q6UDR6 99 aa3.12□□□□□ -1.91
CHD3-213ENST00000571249 KRTAP8-1Q8IUC2 63 aa3.11□□□□□ -1.91
CHD3-213ENST00000571249 A0A1B0GU33 70 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms