RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 RPL37P61927 97 aaKnown RBP5.89□□□□□ -1.47
CLK3-226ENST00000569406 FAT1Q14517 4588 aa5.89□□□□□ -1.47
CLK3-226ENST00000569406 RYR2Q92736 4967 aa5.89□□□□□ -1.47
CLK3-226ENST00000569406 C9orf92A6NGG3 77 aa5.88□□□□□ -1.47
CLK3-226ENST00000569406 J3QL48 77 aa5.88□□□□□ -1.47
CLK3-226ENST00000569406 COX6B2Q6YFQ2 88 aa5.88□□□□□ -1.47
CLK3-226ENST00000569406 KRTAP13-2Q52LG2 175 aa5.87□□□□□ -1.47
CLK3-226ENST00000569406 KRTAP1-4P0C5Y4 121 aa5.85□□□□□ -1.47
CLK3-226ENST00000569406 SMR3BP02814 79 aaPredicted RBP5.83□□□□□ -1.48
CLK3-226ENST00000569406 RYR3Q15413 4870 aa5.75□□□□□ -1.49
CLK3-226ENST00000569406 TNXBP22105 4242 aa5.73□□□□□ -1.49
CLK3-226ENST00000569406 KRTAP10-4P60372 401 aaPredicted RBP5.73□□□□□ -1.49
CLK3-226ENST00000569406 LRP1Q07954 4544 aaKnown RBP5.71□□□□□ -1.5
CLK3-226ENST00000569406 HSPG2P98160 4391 aa5.7□□□□□ -1.5
CLK3-226ENST00000569406 A0A1B0GVY2 172 aa5.7□□□□□ -1.5
CLK3-226ENST00000569406 KRTAP13-4Q3LI77 160 aa5.66□□□□□ -1.5
CLK3-226ENST00000569406 PLAC4Q8WY50 150 aa5.66□□□□□ -1.5
CLK3-226ENST00000569406 S4R3F8 94 aa5.64□□□□□ -1.51
CLK3-226ENST00000569406 FAT3Q8TDW7 4589 aa5.63□□□□□ -1.51
CLK3-226ENST00000569406 CAMK2N1Q7Z7J9 78 aa5.63□□□□□ -1.51
CLK3-226ENST00000569406 KRTAP3-1Q9BYR8 98 aa5.61□□□□□ -1.51
CLK3-226ENST00000569406 MYCBP2O75592 4640 aa5.57□□□□□ -1.52
CLK3-226ENST00000569406 KRTAP17-1Q9BYP8 105 aa5.57□□□□□ -1.52
CLK3-226ENST00000569406 RYR1P21817 5038 aa5.57□□□□□ -1.52
CLK3-226ENST00000569406 KRTAP12-2P59991 146 aa5.57□□□□□ -1.52
CLK3-226ENST00000569406 RPS29P62273 56 aaKnown RBP5.54□□□□□ -1.52
CLK3-226ENST00000569406 XP32Q5T750 250 aa5.53□□□□□ -1.52
CLK3-226ENST00000569406 KRTAP10-6P60371 365 aaPredicted RBP5.52□□□□□ -1.53
CLK3-226ENST00000569406 KIAA1109Q2LD37 5005 aa5.51□□□□□ -1.53
CLK3-226ENST00000569406 EPPK1P58107 5090 aaKnown RBP5.5□□□□□ -1.53
CLK3-226ENST00000569406 KRTAP3-2Q9BYR7 98 aa5.5□□□□□ -1.53
CLK3-226ENST00000569406 LPAP08519 4548 aa5.47□□□□□ -1.53
CLK3-226ENST00000569406 KRTAP10-8P60410 259 aa5.42□□□□□ -1.54
CLK3-226ENST00000569406 KRTAP12-1P59990 96 aa5.41□□□□□ -1.54
CLK3-226ENST00000569406 ABCA13Q86UQ4 5058 aa5.41□□□□□ -1.54
CLK3-226ENST00000569406 PRO2289Q9P1D8 64 aa5.37□□□□□ -1.55
CLK3-226ENST00000569406 LRP2P98164 4655 aa5.35□□□□□ -1.55
CLK3-226ENST00000569406 R4GN34 69 aa5.34□□□□□ -1.56
CLK3-226ENST00000569406 MT1HL1P0DM35 61 aa5.3□□□□□ -1.56
CLK3-226ENST00000569406 Q5VSD8 79 aa5.3□□□□□ -1.56
CLK3-226ENST00000569406 KRTAP3-3Q9BYR6 98 aa5.27□□□□□ -1.57
CLK3-226ENST00000569406 KRTAP4-5Q9BYR2 181 aa5.18□□□□□ -1.58
CLK3-226ENST00000569406 M0QZ58 72 aa5.17□□□□□ -1.58
CLK3-226ENST00000569406 MUC17Q685J3 4493 aa5.15□□□□□ -1.58
CLK3-226ENST00000569406 HERC2O95714 4834 aa5.11□□□□□ -1.59
CLK3-226ENST00000569406 MUC2Q02817 5179 aa5.06□□□□□ -1.6
CLK3-226ENST00000569406 INE1O15225 51 aa5.05□□□□□ -1.6
CLK3-226ENST00000569406 PP632Q6XCG6 107 aa5.04□□□□□ -1.6
CLK3-226ENST00000569406 BIRC6Q9NR09 4857 aa5□□□□□ -1.61
CLK3-226ENST00000569406 PCLOQ9Y6V0 5065 aa4.99□□□□□ -1.61
CLK3-226ENST00000569406 HERC1Q15751 4861 aa4.97□□□□□ -1.61
CLK3-226ENST00000569406 KRTAP4-1Q9BYQ7 146 aa4.96□□□□□ -1.62
CLK3-226ENST00000569406 KRTAP19-2Q3LHN2 52 aa4.94□□□□□ -1.62
CLK3-226ENST00000569406 FLGP20930 4061 aaPredicted RBP4.92□□□□□ -1.62
CLK3-226ENST00000569406 SPRR5A0A1B0GTR4 108 aa4.89□□□□□ -1.63
CLK3-226ENST00000569406 HMCN2Q8NDA2 5059 aa4.88□□□□□ -1.63
CLK3-226ENST00000569406 FAT4Q6V0I7 4981 aa4.78□□□□□ -1.64
CLK3-226ENST00000569406 LORP23490 312 aaPredicted RBP4.78□□□□□ -1.64
CLK3-226ENST00000569406 RNF213Q63HN8 5207 aa4.76□□□□□ -1.65
CLK3-226ENST00000569406 KRTAP23-1A1A580 65 aa4.74□□□□□ -1.65
CLK3-226ENST00000569406 UBR4Q5T4S7 5183 aa4.72□□□□□ -1.65
CLK3-226ENST00000569406 M0R2T5 61 aa4.72□□□□□ -1.65
CLK3-226ENST00000569406 TNP1P09430 55 aa4.7□□□□□ -1.66
CLK3-226ENST00000569406 LCE2CQ5TA81 110 aa4.63□□□□□ -1.67
CLK3-226ENST00000569406 FSIP2Q5CZC0 6907 aa4.44□□□□□ -1.7
CLK3-226ENST00000569406 MT1HP80294 61 aa4.43□□□□□ -1.7
CLK3-226ENST00000569406 KRTAP19-1Q8IUB9 90 aa4.42□□□□□ -1.7
CLK3-226ENST00000569406 KRTAP10-10P60014 251 aa4.39□□□□□ -1.71
CLK3-226ENST00000569406 SPRR2GQ9BYE4 73 aa4.38□□□□□ -1.71
CLK3-226ENST00000569406 KRTAP9-8Q9BYQ0 159 aa4.37□□□□□ -1.71
CLK3-226ENST00000569406 MT1FP04733 61 aa4.34□□□□□ -1.71
CLK3-226ENST00000569406 LCE3AQ5TA76 89 aa4.34□□□□□ -1.72
CLK3-226ENST00000569406 MT2AP02795 61 aa4.32□□□□□ -1.72
CLK3-226ENST00000569406 KRTAP19-8Q3LI54 63 aa4.2□□□□□ -1.74
CLK3-226ENST00000569406 MT1BP07438 61 aa4.19□□□□□ -1.74
CLK3-226ENST00000569406 KRTAP9-3Q9BYQ3 159 aa4.17□□□□□ -1.74
CLK3-226ENST00000569406 USH2AO75445 5202 aa4.15□□□□□ -1.75
CLK3-226ENST00000569406 KRTAP10-5P60370 271 aa4.14□□□□□ -1.75
CLK3-226ENST00000569406 OBSCNQ5VST9 7968 aa4.14□□□□□ -1.75
CLK3-226ENST00000569406 MT1XP80297 61 aa4.14□□□□□ -1.75
CLK3-226ENST00000569406 KRTAP10-12P60413 245 aa4.12□□□□□ -1.75
CLK3-226ENST00000569406 KRTAP12-3P60328 96 aa4.08□□□□□ -1.76
CLK3-226ENST00000569406 KRTAP8-1Q8IUC2 63 aa4.08□□□□□ -1.76
CLK3-226ENST00000569406 LCE2AQ5TA79 106 aaPredicted RBP4.05□□□□□ -1.76
CLK3-226ENST00000569406 LCE2BO14633 110 aa4.04□□□□□ -1.76
CLK3-226ENST00000569406 KMT2DO14686 5537 aa4.02□□□□□ -1.77
CLK3-226ENST00000569406 KRTAP10-7P60409 375 aaPredicted RBP4.01□□□□□ -1.77
CLK3-226ENST00000569406 SSPOA2VEC9 5147 aa3.87□□□□□ -1.79
CLK3-226ENST00000569406 LCE3CQ5T5A8 94 aa3.83□□□□□ -1.8
CLK3-226ENST00000569406 KRTAP2-3P0C7H8 128 aa3.82□□□□□ -1.8
CLK3-226ENST00000569406 KRTAP2-4Q9BYR9 128 aa3.82□□□□□ -1.8
CLK3-226ENST00000569406 KRTAP2-1Q9BYU5 128 aa3.82□□□□□ -1.8
CLK3-226ENST00000569406 KRTAP19-5Q3LI72 72 aa3.81□□□□□ -1.8
CLK3-226ENST00000569406 KRTAP4-8A0A0G2JLE6 195 aa3.79□□□□□ -1.8
CLK3-226ENST00000569406 KRTAP4-8Q9BYQ9 185 aa3.79□□□□□ -1.8
CLK3-226ENST00000569406 KRTAP9-6A8MVA2 160 aa3.79□□□□□ -1.8
CLK3-226ENST00000569406 KRTAP12-4P60329 112 aa3.76□□□□□ -1.81
CLK3-226ENST00000569406 CRCT1Q9UGL9 99 aa3.76□□□□□ -1.81
CLK3-226ENST00000569406 LCE2DQ5TA82 110 aaPredicted RBP3.72□□□□□ -1.81
CLK3-226ENST00000569406 KRTAP19-7Q3SYF9 63 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms