RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 SPRR2GQ9BYE4 73 aa8.46□□□□□ -1.06
CLN3-227ENST00000567495 A8MUN3 132 aa8.45□□□□□ -1.06
CLN3-227ENST00000567495 MP68P56378 58 aa8.45□□□□□ -1.06
CLN3-227ENST00000567495 NDUFC1O43677 76 aa8.43□□□□□ -1.06
CLN3-227ENST00000567495 LINC00208Q96KT6 92 aa8.43□□□□□ -1.06
CLN3-227ENST00000567495 OCR1Q9BZK8 76 aa8.43□□□□□ -1.06
CLN3-227ENST00000567495 MACF1Q9UPN3 7388 aaKnown RBP8.41□□□□□ -1.06
CLN3-227ENST00000567495 Q5VV11 94 aa8.41□□□□□ -1.06
CLN3-227ENST00000567495 IMUPQ9GZP8 106 aa8.41□□□□□ -1.06
CLN3-227ENST00000567495 CRIPTQ9P021 101 aa8.41□□□□□ -1.06
CLN3-227ENST00000567495 KRTAP19-8Q3LI54 63 aa8.39□□□□□ -1.07
CLN3-227ENST00000567495 H0YAA0 97 aa8.35□□□□□ -1.07
CLN3-227ENST00000567495 H3BPC8 53 aa8.35□□□□□ -1.07
CLN3-227ENST00000567495 MT1BP07438 61 aa8.35□□□□□ -1.07
CLN3-227ENST00000567495 SCGB1A1P11684 91 aa8.32□□□□□ -1.08
CLN3-227ENST00000567495 SYNE2Q8WXH0 6885 aaKnown RBP8.29□□□□□ -1.08
CLN3-227ENST00000567495 A6NN06 94 aa8.29□□□□□ -1.08
CLN3-227ENST00000567495 KRTAP6-3Q3LI67 103 aa8.21□□□□□ -1.1
CLN3-227ENST00000567495 ADM2Q7Z4H4 148 aa8.2□□□□□ -1.1
CLN3-227ENST00000567495 KRTAP10-5P60370 271 aa8.19□□□□□ -1.1
CLN3-227ENST00000567495 DMAC1Q96GE9 116 aa8.18□□□□□ -1.1
CLN3-227ENST00000567495 K7ERU9 68 aa8.14□□□□□ -1.11
CLN3-227ENST00000567495 SMIM20Q8N5G0 67 aa8.13□□□□□ -1.11
CLN3-227ENST00000567495 C20orf197Q8N268 126 aa8.12□□□□□ -1.11
CLN3-227ENST00000567495 MT-ATP8P03928 68 aa8.08□□□□□ -1.12
CLN3-227ENST00000567495 TRAV7A0A075B6U4 112 aa8.06□□□□□ -1.12
CLN3-227ENST00000567495 R4GN34 69 aa8.03□□□□□ -1.12
CLN3-227ENST00000567495 ACYP2P14621 99 aa8.02□□□□□ -1.13
CLN3-227ENST00000567495 P0C880 135 aa7.99□□□□□ -1.13
CLN3-227ENST00000567495 PLAC4Q8WY50 150 aa7.98□□□□□ -1.13
CLN3-227ENST00000567495 PRO2289Q9P1D8 64 aa7.97□□□□□ -1.13
CLN3-227ENST00000567495 SPTSSBQ8NFR3 76 aa7.95□□□□□ -1.14
CLN3-227ENST00000567495 M0QZ58 72 aa7.94□□□□□ -1.14
CLN3-227ENST00000567495 KRTAP3-2Q9BYR7 98 aa7.94□□□□□ -1.14
CLN3-227ENST00000567495 CHKB-CPT1BH3BT56 60 aa7.86□□□□□ -1.15
CLN3-227ENST00000567495 KRTAP5-9P26371 169 aa7.85□□□□□ -1.15
CLN3-227ENST00000567495 MT1XP80297 61 aa7.85□□□□□ -1.15
CLN3-227ENST00000567495 NEBP20929 6669 aa7.85□□□□□ -1.15
CLN3-227ENST00000567495 SNURFQ9Y675 71 aa7.84□□□□□ -1.15
CLN3-227ENST00000567495 SPANXA2-OT1Q8N9U9 137 aa7.82□□□□□ -1.16
CLN3-227ENST00000567495 LINC01554Q52M75 96 aa7.81□□□□□ -1.16
CLN3-227ENST00000567495 SERP2Q8N6R1 65 aa7.81□□□□□ -1.16
CLN3-227ENST00000567495 MUC12Q9UKN1 5478 aa7.77□□□□□ -1.17
CLN3-227ENST00000567495 KMT2DO14686 5537 aa7.72□□□□□ -1.17
CLN3-227ENST00000567495 KRTAP12-2P59991 146 aa7.71□□□□□ -1.18
CLN3-227ENST00000567495 KRTAP8-1Q8IUC2 63 aa7.61□□□□□ -1.19
CLN3-227ENST00000567495 SPRR2FQ96RM1 72 aa7.61□□□□□ -1.19
CLN3-227ENST00000567495 MDN1Q9NU22 5596 aa7.61□□□□□ -1.19
CLN3-227ENST00000567495 KRTAP20-1Q3LI63 56 aa7.57□□□□□ -1.2
CLN3-227ENST00000567495 COX7CP15954 63 aa7.55□□□□□ -1.2
CLN3-227ENST00000567495 COA5Q86WW8 74 aa7.55□□□□□ -1.2
CLN3-227ENST00000567495 SPRR2EP22531 72 aa7.48□□□□□ -1.21
CLN3-227ENST00000567495 SPRR2BP35325 72 aa7.48□□□□□ -1.21
CLN3-227ENST00000567495 SPRR2AP35326 72 aa7.48□□□□□ -1.21
CLN3-227ENST00000567495 SEC61GP60059 68 aa7.48□□□□□ -1.21
CLN3-227ENST00000567495 KRTAP10-12P60413 245 aa7.48□□□□□ -1.21
CLN3-227ENST00000567495 KRTAP10-7P60409 375 aaPredicted RBP7.47□□□□□ -1.21
CLN3-227ENST00000567495 KRTAP4-8A0A0G2JLE6 195 aa7.46□□□□□ -1.22
CLN3-227ENST00000567495 KRTAP13-4Q3LI77 160 aa7.46□□□□□ -1.22
CLN3-227ENST00000567495 KRTAP4-8Q9BYQ9 185 aa7.46□□□□□ -1.22
CLN3-227ENST00000567495 SERP1Q9Y6X1 66 aa7.46□□□□□ -1.22
CLN3-227ENST00000567495 H7BZZ5 65 aa7.42□□□□□ -1.22
CLN3-227ENST00000567495 KRTAP2-3P0C7H8 128 aa7.41□□□□□ -1.22
CLN3-227ENST00000567495 KRTAP2-4Q9BYR9 128 aa7.41□□□□□ -1.22
CLN3-227ENST00000567495 CAMK2N1Q7Z7J9 78 aa7.4□□□□□ -1.22
CLN3-227ENST00000567495 LCE1AQ5T7P2 110 aa7.39□□□□□ -1.23
CLN3-227ENST00000567495 CYSTM1Q9H1C7 97 aa7.34□□□□□ -1.23
CLN3-227ENST00000567495 A0A1B0GU33 70 aa7.3□□□□□ -1.24
CLN3-227ENST00000567495 ANAPC13Q9BS18 74 aa7.3□□□□□ -1.24
CLN3-227ENST00000567495 A0A0D9SG42 100 aa7.27□□□□□ -1.25
CLN3-227ENST00000567495 SPRR2DP22532 72 aa7.24□□□□□ -1.25
CLN3-227ENST00000567495 SPATA8Q6RVD6 105 aa7.24□□□□□ -1.25
CLN3-227ENST00000567495 A0A1B0GU69 56 aa7.2□□□□□ -1.26
CLN3-227ENST00000567495 SPINT4Q6UDR6 99 aa7.18□□□□□ -1.26
CLN3-227ENST00000567495 KRTAP2-2Q9BYT5 123 aa7.18□□□□□ -1.26
CLN3-227ENST00000567495 KRTAP2-1Q9BYU5 128 aa7.18□□□□□ -1.26
CLN3-227ENST00000567495 SMIM26A0A096LP01 95 aa7.14□□□□□ -1.27
CLN3-227ENST00000567495 KRTAP12-1P59990 96 aa7.13□□□□□ -1.27
CLN3-227ENST00000567495 ATP5EP56381 51 aaPredicted RBP7.12□□□□□ -1.27
CLN3-227ENST00000567495 CCDC179H3BU77 68 aa7.1□□□□□ -1.27
CLN3-227ENST00000567495 LCE3BQ5TA77 95 aa7.04□□□□□ -1.28
CLN3-227ENST00000567495 PRR15LQ9BU68 103 aa7.03□□□□□ -1.28
CLN3-227ENST00000567495 KRTAP19-7Q3SYF9 63 aa7.01□□□□□ -1.29
CLN3-227ENST00000567495 A8MU10 97 aa6.97□□□□□ -1.29
CLN3-227ENST00000567495 MT1EP04732 61 aa6.96□□□□□ -1.3
CLN3-227ENST00000567495 LCE5AQ5TCM9 118 aa6.92□□□□□ -1.3
CLN3-227ENST00000567495 LINC01558Q9Y6Z2 57 aa6.92□□□□□ -1.3
CLN3-227ENST00000567495 TMEM258P61165 79 aa6.91□□□□□ -1.3
CLN3-227ENST00000567495 KRTAP19-3Q7Z4W3 81 aa6.91□□□□□ -1.3
CLN3-227ENST00000567495 KRTAP19-5Q3LI72 72 aa6.85□□□□□ -1.31
CLN3-227ENST00000567495 TNP1P09430 55 aa6.84□□□□□ -1.31
CLN3-227ENST00000567495 C10orf95Q9H7T3 257 aa6.8□□□□□ -1.32
CLN3-227ENST00000567495 MT1GP13640 62 aa6.79□□□□□ -1.32
CLN3-227ENST00000567495 UQCR11O14957 56 aa6.78□□□□□ -1.32
CLN3-227ENST00000567495 PP632Q6XCG6 107 aa6.76□□□□□ -1.33
CLN3-227ENST00000567495 LCE3AQ5TA76 89 aa6.71□□□□□ -1.34
CLN3-227ENST00000567495 DSTQ03001 7570 aaKnown RBP6.7□□□□□ -1.34
CLN3-227ENST00000567495 PCP4P48539 62 aa6.69□□□□□ -1.34
CLN3-227ENST00000567495 MT1LQ93083 61 aa6.66□□□□□ -1.34
CLN3-227ENST00000567495 MT1MQ8N339 61 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 293.2 ms