RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 TYMSOSQ8TAI1 123 aa7.36□□□□□ -1.23
VPS4A-204ENST00000566354 BIRC6Q9NR09 4857 aa7.35□□□□□ -1.23
VPS4A-204ENST00000566354 SEC61BP60468 96 aaKnown RBP7.33□□□□□ -1.24
VPS4A-204ENST00000566354 MYCBP2O75592 4640 aa7.32□□□□□ -1.24
VPS4A-204ENST00000566354 KRTAP4-5Q9BYR2 181 aa7.3□□□□□ -1.24
VPS4A-204ENST00000566354 P0C880 135 aa7.28□□□□□ -1.24
VPS4A-204ENST00000566354 FAT3Q8TDW7 4589 aa7.28□□□□□ -1.24
VPS4A-204ENST00000566354 RPS29P62273 56 aaKnown RBP7.28□□□□□ -1.24
VPS4A-204ENST00000566354 LINC00304Q8N9R0 145 aa7.25□□□□□ -1.25
VPS4A-204ENST00000566354 TNXBP22105 4242 aa7.25□□□□□ -1.25
VPS4A-204ENST00000566354 HERC2O95714 4834 aa7.25□□□□□ -1.25
VPS4A-204ENST00000566354 ABCA13Q86UQ4 5058 aa7.22□□□□□ -1.25
VPS4A-204ENST00000566354 KRTAP10-8P60410 259 aa7.21□□□□□ -1.26
VPS4A-204ENST00000566354 DMBT1Q9UGM3 2413 aaPredicted RBP7.21□□□□□ -1.26
VPS4A-204ENST00000566354 A8MUU9 505 aa7.17□□□□□ -1.26
VPS4A-204ENST00000566354 MT1HL1P0DM35 61 aa7.16□□□□□ -1.26
VPS4A-204ENST00000566354 C20orf166-AS1Q96NR2 134 aa7.16□□□□□ -1.26
VPS4A-204ENST00000566354 C9orf92A6NGG3 77 aa7.11□□□□□ -1.27
VPS4A-204ENST00000566354 LCE2CQ5TA81 110 aa7.11□□□□□ -1.27
VPS4A-204ENST00000566354 K7ERS5 55 aa7.09□□□□□ -1.28
VPS4A-204ENST00000566354 KRTAP3-1Q9BYR8 98 aa7.08□□□□□ -1.28
VPS4A-204ENST00000566354 LCE2AQ5TA79 106 aaPredicted RBP7.07□□□□□ -1.28
VPS4A-204ENST00000566354 H0YAA0 97 aa7.06□□□□□ -1.28
VPS4A-204ENST00000566354 A0A1B0GU33 70 aa7.04□□□□□ -1.28
VPS4A-204ENST00000566354 PCLOQ9Y6V0 5065 aa7.03□□□□□ -1.28
VPS4A-204ENST00000566354 H1FX-AS1Q4G0G2 97 aa7□□□□□ -1.29
VPS4A-204ENST00000566354 NDUFAF8A1L188 74 aa7□□□□□ -1.29
VPS4A-204ENST00000566354 LUZP6Q538Z0 58 aa6.99□□□□□ -1.29
VPS4A-204ENST00000566354 LCE2BO14633 110 aa6.98□□□□□ -1.29
VPS4A-204ENST00000566354 KRTAP15-1Q3LI76 137 aa6.98□□□□□ -1.29
VPS4A-204ENST00000566354 COX6B2Q6YFQ2 88 aa6.97□□□□□ -1.29
VPS4A-204ENST00000566354 SPINT4Q6UDR6 99 aa6.93□□□□□ -1.3
VPS4A-204ENST00000566354 KRTAP23-1A1A580 65 aa6.93□□□□□ -1.3
VPS4A-204ENST00000566354 HERC1Q15751 4861 aa6.87□□□□□ -1.31
VPS4A-204ENST00000566354 LPAP08519 4548 aa6.84□□□□□ -1.31
VPS4A-204ENST00000566354 XP32Q5T750 250 aa6.79□□□□□ -1.32
VPS4A-204ENST00000566354 LRP2P98164 4655 aa6.79□□□□□ -1.32
VPS4A-204ENST00000566354 TPRXLQ17RH7 258 aa6.78□□□□□ -1.32
VPS4A-204ENST00000566354 RPL37P61927 97 aaKnown RBP6.77□□□□□ -1.33
VPS4A-204ENST00000566354 KRTAP10-6P60371 365 aaPredicted RBP6.76□□□□□ -1.33
VPS4A-204ENST00000566354 S4R3F8 94 aa6.71□□□□□ -1.34
VPS4A-204ENST00000566354 HMCN2Q8NDA2 5059 aa6.71□□□□□ -1.34
VPS4A-204ENST00000566354 KRTAP13-4Q3LI77 160 aa6.68□□□□□ -1.34
VPS4A-204ENST00000566354 CRIPTQ9P021 101 aa6.67□□□□□ -1.34
VPS4A-204ENST00000566354 A0A0D9SG42 100 aa6.64□□□□□ -1.35
VPS4A-204ENST00000566354 CAMK2N1Q7Z7J9 78 aa6.62□□□□□ -1.35
VPS4A-204ENST00000566354 LORP23490 312 aaPredicted RBP6.6□□□□□ -1.35
VPS4A-204ENST00000566354 MUC17Q685J3 4493 aa6.49□□□□□ -1.37
VPS4A-204ENST00000566354 KRTAP12-2P59991 146 aa6.49□□□□□ -1.37
VPS4A-204ENST00000566354 KRTAP4-1Q9BYQ7 146 aa6.49□□□□□ -1.37
VPS4A-204ENST00000566354 MUC2Q02817 5179 aa6.48□□□□□ -1.37
VPS4A-204ENST00000566354 UBR4Q5T4S7 5183 aa6.46□□□□□ -1.38
VPS4A-204ENST00000566354 KRTAP12-1P59990 96 aa6.45□□□□□ -1.38
VPS4A-204ENST00000566354 M0QZ58 72 aa6.44□□□□□ -1.38
VPS4A-204ENST00000566354 C10orf95Q9H7T3 257 aa6.42□□□□□ -1.38
VPS4A-204ENST00000566354 RNF213Q63HN8 5207 aa6.37□□□□□ -1.39
VPS4A-204ENST00000566354 KRTAP19-2Q3LHN2 52 aa6.27□□□□□ -1.41
VPS4A-204ENST00000566354 PLAC4Q8WY50 150 aa6.27□□□□□ -1.41
VPS4A-204ENST00000566354 R4GN34 69 aa6.24□□□□□ -1.41
VPS4A-204ENST00000566354 FAT4Q6V0I7 4981 aa6.22□□□□□ -1.41
VPS4A-204ENST00000566354 PRO2289Q9P1D8 64 aa6.2□□□□□ -1.42
VPS4A-204ENST00000566354 FLGP20930 4061 aaPredicted RBP6.17□□□□□ -1.42
VPS4A-204ENST00000566354 MT1HP80294 61 aa6.04□□□□□ -1.44
VPS4A-204ENST00000566354 M0R2T5 61 aa5.97□□□□□ -1.45
VPS4A-204ENST00000566354 INE1O15225 51 aa5.97□□□□□ -1.45
VPS4A-204ENST00000566354 PP632Q6XCG6 107 aa5.94□□□□□ -1.46
VPS4A-204ENST00000566354 KRTAP9-8Q9BYQ0 159 aa5.81□□□□□ -1.48
VPS4A-204ENST00000566354 SPRR5A0A1B0GTR4 108 aa5.78□□□□□ -1.48
VPS4A-204ENST00000566354 MT2AP02795 61 aa5.78□□□□□ -1.48
VPS4A-204ENST00000566354 MT1FP04733 61 aa5.76□□□□□ -1.49
VPS4A-204ENST00000566354 TNP1P09430 55 aa5.74□□□□□ -1.49
VPS4A-204ENST00000566354 KRTAP10-10P60014 251 aa5.73□□□□□ -1.49
VPS4A-204ENST00000566354 KRTAP19-1Q8IUB9 90 aa5.62□□□□□ -1.51
VPS4A-204ENST00000566354 SPRR2GQ9BYE4 73 aa5.59□□□□□ -1.51
VPS4A-204ENST00000566354 KRTAP9-3Q9BYQ3 159 aa5.59□□□□□ -1.51
VPS4A-204ENST00000566354 KRTAP19-8Q3LI54 63 aa5.46□□□□□ -1.54
VPS4A-204ENST00000566354 MT1BP07438 61 aa5.42□□□□□ -1.54
VPS4A-204ENST00000566354 USH2AO75445 5202 aa5.4□□□□□ -1.54
VPS4A-204ENST00000566354 LCE3AQ5TA76 89 aa5.39□□□□□ -1.55
VPS4A-204ENST00000566354 FSIP2Q5CZC0 6907 aa5.35□□□□□ -1.55
VPS4A-204ENST00000566354 KRTAP8-1Q8IUC2 63 aa5.29□□□□□ -1.56
VPS4A-204ENST00000566354 SSPOA2VEC9 5147 aa5.25□□□□□ -1.57
VPS4A-204ENST00000566354 MT1XP80297 61 aa5.23□□□□□ -1.57
VPS4A-204ENST00000566354 KRTAP10-5P60370 271 aa5.23□□□□□ -1.57
VPS4A-204ENST00000566354 KRTAP9-2Q9BYQ4 174 aa5.19□□□□□ -1.58
VPS4A-204ENST00000566354 KRTAP12-3P60328 96 aa5.15□□□□□ -1.59
VPS4A-204ENST00000566354 KRTAP10-12P60413 245 aa5.15□□□□□ -1.59
VPS4A-204ENST00000566354 KRTAP19-6Q3LI70 58 aa5.11□□□□□ -1.59
VPS4A-204ENST00000566354 LCE5AQ5TCM9 118 aa5.08□□□□□ -1.6
VPS4A-204ENST00000566354 KRTAP10-7P60409 375 aaPredicted RBP5.06□□□□□ -1.6
VPS4A-204ENST00000566354 FCGBPQ9Y6R7 5405 aaPredicted RBP5.03□□□□□ -1.6
VPS4A-204ENST00000566354 KRTAP9-4Q9BYQ2 154 aa5.01□□□□□ -1.61
VPS4A-204ENST00000566354 CRCT1Q9UGL9 99 aa4.98□□□□□ -1.61
VPS4A-204ENST00000566354 KMT2DO14686 5537 aa4.96□□□□□ -1.62
VPS4A-204ENST00000566354 KRTAP19-4Q3LI73 84 aa4.95□□□□□ -1.62
VPS4A-204ENST00000566354 KRTAP4-8A0A0G2JLE6 195 aa4.88□□□□□ -1.63
VPS4A-204ENST00000566354 KRTAP4-8Q9BYQ9 185 aa4.88□□□□□ -1.63
VPS4A-204ENST00000566354 KRTAP19-5Q3LI72 72 aa4.88□□□□□ -1.63
VPS4A-204ENST00000566354 KRTAP9-9Q9BYP9 154 aa4.87□□□□□ -1.63
VPS4A-204ENST00000566354 LCE3CQ5T5A8 94 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms