RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 HIST1H4AP62805 103 aaKnown RBP4.41□□□□□ -1.7
VPS35-206ENST00000565228 H1FX-AS1Q4G0G2 97 aa4.4□□□□□ -1.71
VPS35-206ENST00000565228 TP53AIP1Q9HCN2 124 aa4.39□□□□□ -1.71
VPS35-206ENST00000565228 CYP4F30PQ9H0H9 118 aa4.38□□□□□ -1.71
VPS35-206ENST00000565228 OCR1Q9BZK8 76 aa4.36□□□□□ -1.71
VPS35-206ENST00000565228 TRAV22A0A0B4J277 110 aa4.35□□□□□ -1.71
VPS35-206ENST00000565228 KRTAP10-10P60014 251 aa4.35□□□□□ -1.71
VPS35-206ENST00000565228 MT-ATP8P03928 68 aa4.34□□□□□ -1.71
VPS35-206ENST00000565228 C1orf64Q8NEQ6 169 aa4.34□□□□□ -1.71
VPS35-206ENST00000565228 UQCRQO14949 82 aa4.33□□□□□ -1.72
VPS35-206ENST00000565228 KRTAP5-3Q6L8H2 238 aa4.33□□□□□ -1.72
VPS35-206ENST00000565228 NEBP20929 6669 aa4.32□□□□□ -1.72
VPS35-206ENST00000565228 H0Y9P7 68 aa4.32□□□□□ -1.72
VPS35-206ENST00000565228 KLKP1Q107X0 134 aa4.32□□□□□ -1.72
VPS35-206ENST00000565228 LCA10Q71F78 164 aa4.31□□□□□ -1.72
VPS35-206ENST00000565228 LOC101927531A0A1B0GV80 90 aa4.3□□□□□ -1.72
VPS35-206ENST00000565228 J3QR89 54 aa4.3□□□□□ -1.72
VPS35-206ENST00000565228 C5orf47Q569G3 176 aa4.29□□□□□ -1.72
VPS35-206ENST00000565228 MUC12Q9UKN1 5478 aa4.27□□□□□ -1.73
VPS35-206ENST00000565228 LINC00208Q96KT6 92 aa4.26□□□□□ -1.73
VPS35-206ENST00000565228 S4R3F8 94 aa4.26□□□□□ -1.73
VPS35-206ENST00000565228 K7ERU9 68 aa4.23□□□□□ -1.73
VPS35-206ENST00000565228 ATOX1O00244 68 aa4.23□□□□□ -1.73
VPS35-206ENST00000565228 IMUPQ9GZP8 106 aa4.21□□□□□ -1.74
VPS35-206ENST00000565228 FAM236AA0A1B0GUQ0 79 aa4.2□□□□□ -1.74
VPS35-206ENST00000565228 FAM236BA0A1B0GV22 79 aa4.2□□□□□ -1.74
VPS35-206ENST00000565228 CSAG1Q6PB30 78 aa4.19□□□□□ -1.74
VPS35-206ENST00000565228 MP68P56378 58 aa4.18□□□□□ -1.74
VPS35-206ENST00000565228 KRTAP6-3Q3LI67 103 aa4.18□□□□□ -1.74
VPS35-206ENST00000565228 SCGB1A1P11684 91 aa4.17□□□□□ -1.74
VPS35-206ENST00000565228 TRAV7A0A075B6U4 112 aa4.15□□□□□ -1.75
VPS35-206ENST00000565228 H3BPC8 53 aa4.15□□□□□ -1.75
VPS35-206ENST00000565228 MT1BP07438 61 aa4.15□□□□□ -1.75
VPS35-206ENST00000565228 KRTAP19-6Q3LI70 58 aa4.15□□□□□ -1.75
VPS35-206ENST00000565228 SPRR2GQ9BYE4 73 aa4.14□□□□□ -1.75
VPS35-206ENST00000565228 DMAC1Q96GE9 116 aa4.13□□□□□ -1.75
VPS35-206ENST00000565228 A8MUN3 132 aa4.12□□□□□ -1.75
VPS35-206ENST00000565228 MDN1Q9NU22 5596 aa4.12□□□□□ -1.75
VPS35-206ENST00000565228 KRTAP19-8Q3LI54 63 aa4.11□□□□□ -1.75
VPS35-206ENST00000565228 KRTAP20-1Q3LI63 56 aa4.1□□□□□ -1.75
VPS35-206ENST00000565228 SNURFQ9Y675 71 aa4.1□□□□□ -1.75
VPS35-206ENST00000565228 NDUFC1O43677 76 aa4.08□□□□□ -1.76
VPS35-206ENST00000565228 H0YAA0 97 aa4.07□□□□□ -1.76
VPS35-206ENST00000565228 P0C880 135 aa4.06□□□□□ -1.76
VPS35-206ENST00000565228 ADM2Q7Z4H4 148 aa4.06□□□□□ -1.76
VPS35-206ENST00000565228 SMIM20Q8N5G0 67 aa4.06□□□□□ -1.76
VPS35-206ENST00000565228 CYSTM1Q9H1C7 97 aa4.05□□□□□ -1.76
VPS35-206ENST00000565228 C20orf197Q8N268 126 aa4.04□□□□□ -1.76
VPS35-206ENST00000565228 SERP2Q8N6R1 65 aa4.04□□□□□ -1.76
VPS35-206ENST00000565228 Q5VV11 94 aa4.01□□□□□ -1.77
VPS35-206ENST00000565228 KMT2DO14686 5537 aa3.98□□□□□ -1.77
VPS35-206ENST00000565228 CRIPTQ9P021 101 aa3.98□□□□□ -1.77
VPS35-206ENST00000565228 ACYP2P14621 99 aa3.97□□□□□ -1.77
VPS35-206ENST00000565228 COX7CP15954 63 aa3.97□□□□□ -1.77
VPS35-206ENST00000565228 KRTAP10-5P60370 271 aa3.97□□□□□ -1.77
VPS35-206ENST00000565228 SPANXA2-OT1Q8N9U9 137 aa3.96□□□□□ -1.78
VPS35-206ENST00000565228 GPR98Q8WXG9 6306 aa3.92□□□□□ -1.78
VPS35-206ENST00000565228 A6NN06 94 aa3.92□□□□□ -1.78
VPS35-206ENST00000565228 H7BZZ5 65 aa3.92□□□□□ -1.78
VPS35-206ENST00000565228 MT1XP80297 61 aa3.91□□□□□ -1.78
VPS35-206ENST00000565228 CCDC179H3BU77 68 aa3.89□□□□□ -1.79
VPS35-206ENST00000565228 M0QZ58 72 aa3.89□□□□□ -1.79
VPS35-206ENST00000565228 KRTAP13-4Q3LI77 160 aa3.89□□□□□ -1.79
VPS35-206ENST00000565228 COA5Q86WW8 74 aa3.88□□□□□ -1.79
VPS35-206ENST00000565228 R4GN34 69 aa3.87□□□□□ -1.79
VPS35-206ENST00000565228 CHKB-CPT1BH3BT56 60 aa3.86□□□□□ -1.79
VPS35-206ENST00000565228 KRTAP2-3P0C7H8 128 aa3.85□□□□□ -1.79
VPS35-206ENST00000565228 ANAPC13Q9BS18 74 aa3.85□□□□□ -1.79
VPS35-206ENST00000565228 KRTAP2-4Q9BYR9 128 aa3.85□□□□□ -1.79
VPS35-206ENST00000565228 KRTAP15-1Q3LI76 137 aa3.84□□□□□ -1.79
VPS35-206ENST00000565228 KRTAP23-1A1A580 65 aa3.83□□□□□ -1.8
VPS35-206ENST00000565228 LINC01554Q52M75 96 aa3.83□□□□□ -1.8
VPS35-206ENST00000565228 KRTAP5-9P26371 169 aa3.82□□□□□ -1.8
VPS35-206ENST00000565228 SPTSSBQ8NFR3 76 aa3.81□□□□□ -1.8
VPS35-206ENST00000565228 PLAC4Q8WY50 150 aa3.78□□□□□ -1.8
VPS35-206ENST00000565228 KRTAP10-7P60409 375 aaPredicted RBP3.75□□□□□ -1.81
VPS35-206ENST00000565228 SPATA8Q6RVD6 105 aa3.72□□□□□ -1.81
VPS35-206ENST00000565228 KRTAP12-2P59991 146 aa3.71□□□□□ -1.82
VPS35-206ENST00000565228 KRTAP2-2Q9BYT5 123 aa3.7□□□□□ -1.82
VPS35-206ENST00000565228 KRTAP2-1Q9BYU5 128 aa3.7□□□□□ -1.82
VPS35-206ENST00000565228 PRO2289Q9P1D8 64 aa3.7□□□□□ -1.82
VPS35-206ENST00000565228 KRTAP10-12P60413 245 aa3.69□□□□□ -1.82
VPS35-206ENST00000565228 A0A0D9SG42 100 aa3.66□□□□□ -1.82
VPS35-206ENST00000565228 A0A1B0GU33 70 aa3.66□□□□□ -1.82
VPS35-206ENST00000565228 KRTAP12-1P59990 96 aa3.64□□□□□ -1.83
VPS35-206ENST00000565228 SERP1Q9Y6X1 66 aa3.64□□□□□ -1.83
VPS35-206ENST00000565228 A8MU10 97 aa3.63□□□□□ -1.83
VPS35-206ENST00000565228 ATP5EP56381 51 aaPredicted RBP3.62□□□□□ -1.83
VPS35-206ENST00000565228 TMEM258P61165 79 aa3.62□□□□□ -1.83
VPS35-206ENST00000565228 KRTAP8-1Q8IUC2 63 aa3.62□□□□□ -1.83
VPS35-206ENST00000565228 A0A1B0GU69 56 aa3.61□□□□□ -1.83
VPS35-206ENST00000565228 SEC61GP60059 68 aa3.61□□□□□ -1.83
VPS35-206ENST00000565228 SPRR2FQ96RM1 72 aa3.61□□□□□ -1.83
VPS35-206ENST00000565228 LINC01558Q9Y6Z2 57 aa3.6□□□□□ -1.83
VPS35-206ENST00000565228 SPRR2EP22531 72 aa3.58□□□□□ -1.84
VPS35-206ENST00000565228 SPRR2BP35325 72 aa3.58□□□□□ -1.84
VPS35-206ENST00000565228 SPRR2AP35326 72 aa3.58□□□□□ -1.84
VPS35-206ENST00000565228 SPINT4Q6UDR6 99 aa3.57□□□□□ -1.84
VPS35-206ENST00000565228 LCE1AQ5T7P2 110 aa3.56□□□□□ -1.84
VPS35-206ENST00000565228 CAMK2N1Q7Z7J9 78 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms