RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 LRP1BQ9NZR2 4599 aa5.33□□□□□ -1.56
RNF40-204ENST00000563683 DNAH6Q9C0G6 4158 aa5.32□□□□□ -1.56
RNF40-204ENST00000563683 KRTAP10-6P60371 365 aaPredicted RBP5.31□□□□□ -1.56
RNF40-204ENST00000563683 KRTAP13-4Q3LI77 160 aa5.28□□□□□ -1.56
RNF40-204ENST00000563683 FAT1Q14517 4588 aa5.27□□□□□ -1.57
RNF40-204ENST00000563683 NDUFAF8A1L188 74 aa5.27□□□□□ -1.57
RNF40-204ENST00000563683 A0A0A0MQY5 61 aa5.27□□□□□ -1.57
RNF40-204ENST00000563683 KRTAP10-4P60372 401 aaPredicted RBP5.26□□□□□ -1.57
RNF40-204ENST00000563683 KRTAP15-1Q3LI76 137 aa5.26□□□□□ -1.57
RNF40-204ENST00000563683 C10orf95Q9H7T3 257 aa5.26□□□□□ -1.57
RNF40-204ENST00000563683 VPS13BQ7Z7G8 4022 aa5.25□□□□□ -1.57
RNF40-204ENST00000563683 KRTAP3-3Q9BYR6 98 aa5.24□□□□□ -1.57
RNF40-204ENST00000563683 KRTAP3-2Q9BYR7 98 aa5.24□□□□□ -1.57
RNF40-204ENST00000563683 SACSQ9NZJ4 4579 aa5.18□□□□□ -1.58
RNF40-204ENST00000563683 KRTAP12-2P59991 146 aa5.17□□□□□ -1.58
RNF40-204ENST00000563683 PKD1P98161 4303 aa5.16□□□□□ -1.58
RNF40-204ENST00000563683 DYNC1H1Q14204 4646 aaKnown RBP5.16□□□□□ -1.58
RNF40-204ENST00000563683 MT1HL1P0DM35 61 aa5.13□□□□□ -1.59
RNF40-204ENST00000563683 KRTAP12-1P59990 96 aa5.13□□□□□ -1.59
RNF40-204ENST00000563683 LUZP6Q538Z0 58 aa5.11□□□□□ -1.59
RNF40-204ENST00000563683 FAT2Q9NYQ8 4349 aa5.11□□□□□ -1.59
RNF40-204ENST00000563683 PKHD1L1Q86WI1 4243 aa5.08□□□□□ -1.6
RNF40-204ENST00000563683 HYDINQ4G0P3 5121 aa5.07□□□□□ -1.6
RNF40-204ENST00000563683 MYCBP2O75592 4640 aa5.07□□□□□ -1.6
RNF40-204ENST00000563683 PLAC4Q8WY50 150 aa5.07□□□□□ -1.6
RNF40-204ENST00000563683 KRTAP4-5Q9BYR2 181 aa5.03□□□□□ -1.6
RNF40-204ENST00000563683 PKHD1P08F94 4074 aa5.01□□□□□ -1.61
RNF40-204ENST00000563683 LRP1Q07954 4544 aaKnown RBP4.99□□□□□ -1.61
RNF40-204ENST00000563683 APOBP04114 4563 aaKnown RBP4.98□□□□□ -1.61
RNF40-204ENST00000563683 KIAA1109Q2LD37 5005 aa4.97□□□□□ -1.61
RNF40-204ENST00000563683 RYR1P21817 5038 aa4.95□□□□□ -1.62
RNF40-204ENST00000563683 FAT3Q8TDW7 4589 aa4.93□□□□□ -1.62
RNF40-204ENST00000563683 TNP1P09430 55 aa4.92□□□□□ -1.62
RNF40-204ENST00000563683 RYR3Q15413 4870 aa4.88□□□□□ -1.63
RNF40-204ENST00000563683 KRTAP10-10P60014 251 aa4.87□□□□□ -1.63
RNF40-204ENST00000563683 PP632Q6XCG6 107 aa4.84□□□□□ -1.63
RNF40-204ENST00000563683 KRTAP17-1Q9BYP8 105 aa4.83□□□□□ -1.64
RNF40-204ENST00000563683 KMT2CQ8NEZ4 4911 aaKnown RBP4.82□□□□□ -1.64
RNF40-204ENST00000563683 TNXBP22105 4242 aa4.82□□□□□ -1.64
RNF40-204ENST00000563683 HSPG2P98160 4391 aa4.81□□□□□ -1.64
RNF40-204ENST00000563683 RYR2Q92736 4967 aa4.79□□□□□ -1.64
RNF40-204ENST00000563683 LORP23490 312 aaPredicted RBP4.78□□□□□ -1.64
RNF40-204ENST00000563683 LRP2P98164 4655 aa4.75□□□□□ -1.65
RNF40-204ENST00000563683 KRTAP4-1Q9BYQ7 146 aa4.72□□□□□ -1.65
RNF40-204ENST00000563683 LPAP08519 4548 aa4.59□□□□□ -1.67
RNF40-204ENST00000563683 KRTAP23-1A1A580 65 aa4.58□□□□□ -1.68
RNF40-204ENST00000563683 HERC2O95714 4834 aa4.57□□□□□ -1.68
RNF40-204ENST00000563683 PRO2289Q9P1D8 64 aa4.56□□□□□ -1.68
RNF40-204ENST00000563683 SPRR5A0A1B0GTR4 108 aa4.51□□□□□ -1.69
RNF40-204ENST00000563683 EPPK1P58107 5090 aaKnown RBP4.5□□□□□ -1.69
RNF40-204ENST00000563683 ABCA13Q86UQ4 5058 aa4.39□□□□□ -1.71
RNF40-204ENST00000563683 MUC17Q685J3 4493 aa4.37□□□□□ -1.71
RNF40-204ENST00000563683 KRTAP19-2Q3LHN2 52 aa4.36□□□□□ -1.71
RNF40-204ENST00000563683 LCE3AQ5TA76 89 aa4.35□□□□□ -1.71
RNF40-204ENST00000563683 MT1HP80294 61 aa4.34□□□□□ -1.71
RNF40-204ENST00000563683 MUC2Q02817 5179 aa4.32□□□□□ -1.72
RNF40-204ENST00000563683 INE1O15225 51 aa4.31□□□□□ -1.72
RNF40-204ENST00000563683 KRTAP10-12P60413 245 aa4.3□□□□□ -1.72
RNF40-204ENST00000563683 MT2AP02795 61 aa4.29□□□□□ -1.72
RNF40-204ENST00000563683 SPRR2GQ9BYE4 73 aa4.28□□□□□ -1.72
RNF40-204ENST00000563683 MT1FP04733 61 aa4.28□□□□□ -1.72
RNF40-204ENST00000563683 BIRC6Q9NR09 4857 aa4.26□□□□□ -1.73
RNF40-204ENST00000563683 KRTAP12-3P60328 96 aa4.24□□□□□ -1.73
RNF40-204ENST00000563683 KRTAP19-1Q8IUB9 90 aa4.22□□□□□ -1.73
RNF40-204ENST00000563683 HERC1Q15751 4861 aa4.22□□□□□ -1.73
RNF40-204ENST00000563683 LCE2CQ5TA81 110 aa4.18□□□□□ -1.74
RNF40-204ENST00000563683 PCLOQ9Y6V0 5065 aa4.18□□□□□ -1.74
RNF40-204ENST00000563683 FLGP20930 4061 aaPredicted RBP4.17□□□□□ -1.74
RNF40-204ENST00000563683 FAT4Q6V0I7 4981 aa4.17□□□□□ -1.74
RNF40-204ENST00000563683 RNF213Q63HN8 5207 aa4.16□□□□□ -1.74
RNF40-204ENST00000563683 KRTAP8-1Q8IUC2 63 aa4.13□□□□□ -1.75
RNF40-204ENST00000563683 KRTAP9-8Q9BYQ0 159 aa4.08□□□□□ -1.76
RNF40-204ENST00000563683 UBR4Q5T4S7 5183 aa4.05□□□□□ -1.76
RNF40-204ENST00000563683 KRTAP19-8Q3LI54 63 aa4.03□□□□□ -1.76
RNF40-204ENST00000563683 MT1BP07438 61 aa4.01□□□□□ -1.77
RNF40-204ENST00000563683 KRTAP10-7P60409 375 aaPredicted RBP4.01□□□□□ -1.77
RNF40-204ENST00000563683 MT1XP80297 61 aa4□□□□□ -1.77
RNF40-204ENST00000563683 KRTAP10-5P60370 271 aa3.99□□□□□ -1.77
RNF40-204ENST00000563683 HMCN2Q8NDA2 5059 aa3.99□□□□□ -1.77
RNF40-204ENST00000563683 CRCT1Q9UGL9 99 aa3.96□□□□□ -1.77
RNF40-204ENST00000563683 KRTAP19-5Q3LI72 72 aa3.95□□□□□ -1.78
RNF40-204ENST00000563683 KRTAP9-3Q9BYQ3 159 aa3.92□□□□□ -1.78
RNF40-204ENST00000563683 FSIP2Q5CZC0 6907 aa3.91□□□□□ -1.78
RNF40-204ENST00000563683 KRTAP4-8A0A0G2JLE6 195 aa3.85□□□□□ -1.79
RNF40-204ENST00000563683 KRTAP4-8Q9BYQ9 185 aa3.85□□□□□ -1.79
RNF40-204ENST00000563683 LCE3CQ5T5A8 94 aa3.83□□□□□ -1.8
RNF40-204ENST00000563683 LCE2DQ5TA82 110 aaPredicted RBP3.82□□□□□ -1.8
RNF40-204ENST00000563683 LCE2BO14633 110 aa3.81□□□□□ -1.8
RNF40-204ENST00000563683 OBSCNQ5VST9 7968 aa3.74□□□□□ -1.81
RNF40-204ENST00000563683 USH2AO75445 5202 aa3.7□□□□□ -1.82
RNF40-204ENST00000563683 SPRR2FQ96RM1 72 aa3.68□□□□□ -1.82
RNF40-204ENST00000563683 KRTAP4-7Q9BYR0 210 aa3.66□□□□□ -1.82
RNF40-204ENST00000563683 KRTAP2-3P0C7H8 128 aa3.64□□□□□ -1.83
RNF40-204ENST00000563683 KRTAP2-4Q9BYR9 128 aa3.64□□□□□ -1.83
RNF40-204ENST00000563683 KRTAP2-1Q9BYU5 128 aa3.64□□□□□ -1.83
RNF40-204ENST00000563683 SYNE1Q8NF91 8797 aaKnown RBP3.62□□□□□ -1.83
RNF40-204ENST00000563683 KRTAP19-4Q3LI73 84 aa3.61□□□□□ -1.83
RNF40-204ENST00000563683 KMT2DO14686 5537 aa3.61□□□□□ -1.83
RNF40-204ENST00000563683 LCE2AQ5TA79 106 aaPredicted RBP3.6□□□□□ -1.83
RNF40-204ENST00000563683 KRTAP9-6A8MVA2 160 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms