RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 KRTAP12-1P59990 96 aa7.01□□□□□ -1.29
SHMT2-226ENST00000556825 KRTAP10-2P60368 255 aa6.99□□□□□ -1.29
SHMT2-226ENST00000556825 DMBT1Q9UGM3 2413 aaPredicted RBP6.99□□□□□ -1.29
SHMT2-226ENST00000556825 DNAH5Q8TE73 4624 aa6.97□□□□□ -1.29
SHMT2-226ENST00000556825 KRTAP3-3Q9BYR6 98 aa6.96□□□□□ -1.3
SHMT2-226ENST00000556825 DNAH11Q96DT5 4516 aa6.95□□□□□ -1.3
SHMT2-226ENST00000556825 HYDINQ4G0P3 5121 aa6.92□□□□□ -1.3
SHMT2-226ENST00000556825 KRTAP10-1P60331 282 aa6.91□□□□□ -1.3
SHMT2-226ENST00000556825 PKD1P98161 4303 aa6.89□□□□□ -1.31
SHMT2-226ENST00000556825 J3QL48 77 aa6.89□□□□□ -1.31
SHMT2-226ENST00000556825 FAT2Q9NYQ8 4349 aa6.86□□□□□ -1.31
SHMT2-226ENST00000556825 LRP1BQ9NZR2 4599 aa6.86□□□□□ -1.31
SHMT2-226ENST00000556825 EPPK1P58107 5090 aaKnown RBP6.86□□□□□ -1.31
SHMT2-226ENST00000556825 KRTAP1-4P0C5Y4 121 aa6.84□□□□□ -1.31
SHMT2-226ENST00000556825 PRO2289Q9P1D8 64 aa6.84□□□□□ -1.31
SHMT2-226ENST00000556825 RYR2Q92736 4967 aa6.82□□□□□ -1.32
SHMT2-226ENST00000556825 C9orf92A6NGG3 77 aa6.8□□□□□ -1.32
SHMT2-226ENST00000556825 SACSQ9NZJ4 4579 aa6.8□□□□□ -1.32
SHMT2-226ENST00000556825 RPS29P62273 56 aaKnown RBP6.77□□□□□ -1.33
SHMT2-226ENST00000556825 VPS13BQ7Z7G8 4022 aa6.74□□□□□ -1.33
SHMT2-226ENST00000556825 KRTAP10-8P60410 259 aa6.72□□□□□ -1.33
SHMT2-226ENST00000556825 A0A1B0GVY2 172 aa6.71□□□□□ -1.34
SHMT2-226ENST00000556825 M0QZ58 72 aa6.71□□□□□ -1.34
SHMT2-226ENST00000556825 PKHD1P08F94 4074 aa6.69□□□□□ -1.34
SHMT2-226ENST00000556825 HERC2O95714 4834 aa6.67□□□□□ -1.34
SHMT2-226ENST00000556825 SMR3BP02814 79 aaPredicted RBP6.65□□□□□ -1.34
SHMT2-226ENST00000556825 DYNC1H1Q14204 4646 aaKnown RBP6.64□□□□□ -1.35
SHMT2-226ENST00000556825 PP632Q6XCG6 107 aa6.62□□□□□ -1.35
SHMT2-226ENST00000556825 PCLOQ9Y6V0 5065 aa6.57□□□□□ -1.36
SHMT2-226ENST00000556825 APOBP04114 4563 aaKnown RBP6.55□□□□□ -1.36
SHMT2-226ENST00000556825 R4GN34 69 aa6.54□□□□□ -1.36
SHMT2-226ENST00000556825 KRTAP10-4P60372 401 aaPredicted RBP6.54□□□□□ -1.36
SHMT2-226ENST00000556825 SPRR5A0A1B0GTR4 108 aa6.53□□□□□ -1.36
SHMT2-226ENST00000556825 FAT1Q14517 4588 aa6.53□□□□□ -1.36
SHMT2-226ENST00000556825 INE1O15225 51 aa6.53□□□□□ -1.36
SHMT2-226ENST00000556825 MYCBP2O75592 4640 aa6.52□□□□□ -1.37
SHMT2-226ENST00000556825 RYR1P21817 5038 aa6.5□□□□□ -1.37
SHMT2-226ENST00000556825 PKHD1L1Q86WI1 4243 aa6.46□□□□□ -1.38
SHMT2-226ENST00000556825 Q5VSD8 79 aa6.4□□□□□ -1.39
SHMT2-226ENST00000556825 KIAA1109Q2LD37 5005 aa6.37□□□□□ -1.39
SHMT2-226ENST00000556825 HSPG2P98160 4391 aa6.35□□□□□ -1.39
SHMT2-226ENST00000556825 LRP1Q07954 4544 aaKnown RBP6.29□□□□□ -1.4
SHMT2-226ENST00000556825 KRTAP4-5Q9BYR2 181 aa6.27□□□□□ -1.41
SHMT2-226ENST00000556825 ABCA13Q86UQ4 5058 aa6.27□□□□□ -1.41
SHMT2-226ENST00000556825 FAT3Q8TDW7 4589 aa6.27□□□□□ -1.41
SHMT2-226ENST00000556825 TNXBP22105 4242 aa6.27□□□□□ -1.41
SHMT2-226ENST00000556825 KRTAP23-1A1A580 65 aa6.18□□□□□ -1.42
SHMT2-226ENST00000556825 MT1HL1P0DM35 61 aa6.16□□□□□ -1.42
SHMT2-226ENST00000556825 HERC1Q15751 4861 aa6.09□□□□□ -1.43
SHMT2-226ENST00000556825 LORP23490 312 aaPredicted RBP6.04□□□□□ -1.44
SHMT2-226ENST00000556825 TNP1P09430 55 aa6.01□□□□□ -1.45
SHMT2-226ENST00000556825 UBR4Q5T4S7 5183 aa5.98□□□□□ -1.45
SHMT2-226ENST00000556825 LPAP08519 4548 aa5.96□□□□□ -1.46
SHMT2-226ENST00000556825 LRP2P98164 4655 aa5.91□□□□□ -1.46
SHMT2-226ENST00000556825 HMCN2Q8NDA2 5059 aa5.77□□□□□ -1.49
SHMT2-226ENST00000556825 KRTAP9-6A0A140TA67 174 aa5.67□□□□□ -1.5
SHMT2-226ENST00000556825 MUC17Q685J3 4493 aa5.66□□□□□ -1.5
SHMT2-226ENST00000556825 KRTAP9-2Q9BYQ4 174 aa5.66□□□□□ -1.5
SHMT2-226ENST00000556825 KRTAP4-1Q9BYQ7 146 aa5.64□□□□□ -1.51
SHMT2-226ENST00000556825 KRTAP10-10P60014 251 aa5.6□□□□□ -1.51
SHMT2-226ENST00000556825 LCE3AQ5TA76 89 aa5.56□□□□□ -1.52
SHMT2-226ENST00000556825 RNF213Q63HN8 5207 aa5.56□□□□□ -1.52
SHMT2-226ENST00000556825 KRTAP19-2Q3LHN2 52 aa5.52□□□□□ -1.53
SHMT2-226ENST00000556825 FLGP20930 4061 aaPredicted RBP5.46□□□□□ -1.53
SHMT2-226ENST00000556825 MUC2Q02817 5179 aa5.46□□□□□ -1.54
SHMT2-226ENST00000556825 KRTAP8-1Q8IUC2 63 aa5.45□□□□□ -1.54
SHMT2-226ENST00000556825 KRTAP10-12P60413 245 aa5.44□□□□□ -1.54
SHMT2-226ENST00000556825 FAT4Q6V0I7 4981 aa5.35□□□□□ -1.55
SHMT2-226ENST00000556825 LCE2AQ5TA79 106 aaPredicted RBP5.33□□□□□ -1.56
SHMT2-226ENST00000556825 LCE2CQ5TA81 110 aa5.29□□□□□ -1.56
SHMT2-226ENST00000556825 CRCT1Q9UGL9 99 aa5.28□□□□□ -1.56
SHMT2-226ENST00000556825 LCE2DQ5TA82 110 aaPredicted RBP5.28□□□□□ -1.56
SHMT2-226ENST00000556825 KRTAP12-3P60328 96 aa5.26□□□□□ -1.57
SHMT2-226ENST00000556825 M0R2T5 61 aa5.19□□□□□ -1.58
SHMT2-226ENST00000556825 KRTAP10-5P60370 271 aa5.19□□□□□ -1.58
SHMT2-226ENST00000556825 MT1HP80294 61 aa5.17□□□□□ -1.58
SHMT2-226ENST00000556825 SPRR2GQ9BYE4 73 aa5.12□□□□□ -1.59
SHMT2-226ENST00000556825 KRTAP2-3P0C7H8 128 aa5.11□□□□□ -1.59
SHMT2-226ENST00000556825 KRTAP2-4Q9BYR9 128 aa5.11□□□□□ -1.59
SHMT2-226ENST00000556825 KRTAP2-1Q9BYU5 128 aa5.11□□□□□ -1.59
SHMT2-226ENST00000556825 KRTAP19-1Q8IUB9 90 aa5.04□□□□□ -1.6
SHMT2-226ENST00000556825 KRTAP9-7A8MTY7 169 aa5.03□□□□□ -1.6
SHMT2-226ENST00000556825 MT2AP02795 61 aa5.02□□□□□ -1.61
SHMT2-226ENST00000556825 LCE3CQ5T5A8 94 aa5.02□□□□□ -1.61
SHMT2-226ENST00000556825 KRTAP9-8Q9BYQ0 159 aa5.01□□□□□ -1.61
SHMT2-226ENST00000556825 MT1FP04733 61 aa5□□□□□ -1.61
SHMT2-226ENST00000556825 FSIP2Q5CZC0 6907 aa4.95□□□□□ -1.62
SHMT2-226ENST00000556825 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.93□□□□□ -1.62
SHMT2-226ENST00000556825 KRTAP10-7P60409 375 aaPredicted RBP4.92□□□□□ -1.62
SHMT2-226ENST00000556825 KRTAP9-6A8MVA2 160 aa4.91□□□□□ -1.62
SHMT2-226ENST00000556825 KRTAP19-8Q3LI54 63 aa4.85□□□□□ -1.63
SHMT2-226ENST00000556825 KRTAP9-3Q9BYQ3 159 aa4.82□□□□□ -1.64
SHMT2-226ENST00000556825 MT1XP80297 61 aa4.82□□□□□ -1.64
SHMT2-226ENST00000556825 MT1BP07438 61 aa4.8□□□□□ -1.64
SHMT2-226ENST00000556825 KRTAP19-5Q3LI72 72 aa4.73□□□□□ -1.65
SHMT2-226ENST00000556825 KRTAP12-4P60329 112 aa4.7□□□□□ -1.66
SHMT2-226ENST00000556825 LCE2BO14633 110 aa4.66□□□□□ -1.66
SHMT2-226ENST00000556825 KRTAP2-2Q9BYT5 123 aa4.65□□□□□ -1.66
SHMT2-226ENST00000556825 SSPOA2VEC9 5147 aa4.59□□□□□ -1.68
SHMT2-226ENST00000556825 KRTAP6-3Q3LI67 103 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms