RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 VCANP13611 3396 aa0.29□□□□□ -2.36
SCFD1-211ENST00000554437 SPRR2EP22531 72 aa0.29□□□□□ -2.36
SCFD1-211ENST00000554437 NBEAL2Q6ZNJ1 2754 aa0.29□□□□□ -2.36
SCFD1-211ENST00000554437 ACACBO00763 2458 aa0.29□□□□□ -2.36
SCFD1-211ENST00000554437 MYO9AB2RTY4 2548 aa0.29□□□□□ -2.36
SCFD1-211ENST00000554437 LRP1BQ9NZR2 4599 aa0.29□□□□□ -2.36
SCFD1-211ENST00000554437 RIF1Q5UIP0 2472 aaKnown RBP0.28□□□□□ -2.36
SCFD1-211ENST00000554437 MROH2BQ7Z745 1585 aa0.28□□□□□ -2.36
SCFD1-211ENST00000554437 RPL39P62891 51 aaKnown RBP0.28□□□□□ -2.36
SCFD1-211ENST00000554437 MUC12Q9UKN1 5478 aa0.27□□□□□ -2.37
SCFD1-211ENST00000554437 PKHD1P08F94 4074 aa0.27□□□□□ -2.37
SCFD1-211ENST00000554437 DNAH3Q8TD57 4116 aa0.27□□□□□ -2.37
SCFD1-211ENST00000554437 MKI67P46013 3256 aaKnown RBP0.27□□□□□ -2.37
SCFD1-211ENST00000554437 DUOX1Q9NRD9 1551 aa0.27□□□□□ -2.37
SCFD1-211ENST00000554437 TENM2Q9NT68 2774 aa0.27□□□□□ -2.37
SCFD1-211ENST00000554437 FLGP20930 4061 aaPredicted RBP0.27□□□□□ -2.37
SCFD1-211ENST00000554437 UTP20O75691 2785 aaKnown RBP0.26□□□□□ -2.37
SCFD1-211ENST00000554437 COL12A1Q99715 3063 aa0.26□□□□□ -2.37
SCFD1-211ENST00000554437 SVEP1Q4LDE5 3571 aa0.26□□□□□ -2.37
SCFD1-211ENST00000554437 UNC80Q8N2C7 3258 aa0.25□□□□□ -2.37
SCFD1-211ENST00000554437 ANK3Q12955 4377 aaKnown RBP0.25□□□□□ -2.37
SCFD1-211ENST00000554437 SPART-AS1P0CW21 52 aa0.25□□□□□ -2.37
SCFD1-211ENST00000554437 ZANQ9Y493 2812 aa0.24□□□□□ -2.37
SCFD1-211ENST00000554437 USH2AO75445 5202 aa0.24□□□□□ -2.37
SCFD1-211ENST00000554437 MUC3AQ02505 3323 aa0.24□□□□□ -2.37
SCFD1-211ENST00000554437 CEP350Q5VT06 3117 aa0.24□□□□□ -2.37
SCFD1-211ENST00000554437 BIRC6Q9NR09 4857 aa0.24□□□□□ -2.37
SCFD1-211ENST00000554437 DNHD1Q96M86 4753 aa0.24□□□□□ -2.37
SCFD1-211ENST00000554437 PKHD1L1Q86WI1 4243 aa0.24□□□□□ -2.37
SCFD1-211ENST00000554437 LAMA3Q16787 3333 aa0.24□□□□□ -2.37
SCFD1-211ENST00000554437 LRP2P98164 4655 aa0.24□□□□□ -2.37
SCFD1-211ENST00000554437 LAMA2P24043 3122 aaKnown RBP0.24□□□□□ -2.37
SCFD1-211ENST00000554437 DNAH9Q9NYC9 4486 aa0.23□□□□□ -2.37
SCFD1-211ENST00000554437 DCHS1Q96JQ0 3298 aa0.23□□□□□ -2.37
SCFD1-211ENST00000554437 CEP295Q9C0D2 2601 aa0.23□□□□□ -2.37
SCFD1-211ENST00000554437 SPG11Q96JI7 2443 aa0.23□□□□□ -2.37
SCFD1-211ENST00000554437 ACACAQ13085 2346 aa0.23□□□□□ -2.37
SCFD1-211ENST00000554437 SPRR2FQ96RM1 72 aa0.23□□□□□ -2.37
SCFD1-211ENST00000554437 DNAH11Q96DT5 4516 aa0.23□□□□□ -2.37
SCFD1-211ENST00000554437 RELNP78509 3460 aa0.23□□□□□ -2.37
SCFD1-211ENST00000554437 KALRNO60229 2985 aa0.23□□□□□ -2.37
SCFD1-211ENST00000554437 MAP1AP78559 2803 aaPredicted RBP0.23□□□□□ -2.37
SCFD1-211ENST00000554437 RANBP2P49792 3224 aaKnown RBP0.23□□□□□ -2.37
SCFD1-211ENST00000554437 MGAM2Q2M2H8 2515 aa0.22□□□□□ -2.37
SCFD1-211ENST00000554437 TGP01266 2768 aa0.22□□□□□ -2.37
SCFD1-211ENST00000554437 BOD1L1Q8NFC6 3051 aa0.22□□□□□ -2.37
SCFD1-211ENST00000554437 HTTP42858 3142 aa0.22□□□□□ -2.37
SCFD1-211ENST00000554437 CFAP46Q8IYW2 2715 aa0.22□□□□□ -2.37
SCFD1-211ENST00000554437 NBEAL1Q6ZS30 2694 aa0.21□□□□□ -2.38
SCFD1-211ENST00000554437 SPEGQ15772 3267 aa0.21□□□□□ -2.38
SCFD1-211ENST00000554437 TLN1Q9Y490 2541 aaKnown RBP0.21□□□□□ -2.38
SCFD1-211ENST00000554437 KRTAP8-1Q8IUC2 63 aa0.21□□□□□ -2.38
SCFD1-211ENST00000554437 RPL39LQ96EH5 51 aaKnown RBP0.21□□□□□ -2.38
SCFD1-211ENST00000554437 TOMM7Q9P0U1 55 aa0.21□□□□□ -2.38
SCFD1-211ENST00000554437 NBEAQ8NFP9 2946 aa0.21□□□□□ -2.38
SCFD1-211ENST00000554437 MXRA5Q9NR99 2828 aa0.21□□□□□ -2.38
SCFD1-211ENST00000554437 ITPR1Q14643 2758 aa0.21□□□□□ -2.38
SCFD1-211ENST00000554437 TLN2Q9Y4G6 2542 aa0.2□□□□□ -2.38
SCFD1-211ENST00000554437 AKAP9Q99996 3911 aa0.2□□□□□ -2.38
SCFD1-211ENST00000554437 SPENQ96T58 3664 aaKnown RBP0.2□□□□□ -2.38
SCFD1-211ENST00000554437 EP400Q96L91 3159 aa0.2□□□□□ -2.38
SCFD1-211ENST00000554437 SPRR2GQ9BYE4 73 aa0.2□□□□□ -2.38
SCFD1-211ENST00000554437 ASPMQ8IZT6 3477 aa0.2□□□□□ -2.38
SCFD1-211ENST00000554437 FAT3Q8TDW7 4589 aa0.2□□□□□ -2.38
SCFD1-211ENST00000554437 BRCA2P51587 3418 aa0.19□□□□□ -2.38
SCFD1-211ENST00000554437 TEX15Q9BXT5 2789 aa0.19□□□□□ -2.38
SCFD1-211ENST00000554437 CFAP47Q6ZTR5 3102 aa0.19□□□□□ -2.38
SCFD1-211ENST00000554437 CENPFP49454 3210 aa0.19□□□□□ -2.38
SCFD1-211ENST00000554437 C5orf42Q9H799 3197 aa0.19□□□□□ -2.38
SCFD1-211ENST00000554437 APOBP04114 4563 aaKnown RBP0.19□□□□□ -2.38
SCFD1-211ENST00000554437 HERC2O95714 4834 aa0.18□□□□□ -2.38
SCFD1-211ENST00000554437 WDFY3Q8IZQ1 3526 aa0.18□□□□□ -2.38
SCFD1-211ENST00000554437 MYO15AQ9UKN7 3530 aa0.18□□□□□ -2.38
SCFD1-211ENST00000554437 EYSQ5T1H1 3165 aa0.18□□□□□ -2.38
SCFD1-211ENST00000554437 ITPR2Q14571 2701 aa0.18□□□□□ -2.38
SCFD1-211ENST00000554437 DNAH2Q9P225 4427 aa0.17□□□□□ -2.38
SCFD1-211ENST00000554437 GCC2Q8IWJ2 1684 aa0.17□□□□□ -2.38
SCFD1-211ENST00000554437 NBPF19A0A087WUL8 3843 aa0.17□□□□□ -2.38
SCFD1-211ENST00000554437 USP34Q70CQ2 3546 aa0.17□□□□□ -2.38
SCFD1-211ENST00000554437 TRIOO75962 3097 aa0.17□□□□□ -2.38
SCFD1-211ENST00000554437 SPTAN1Q13813 2472 aaKnown RBP0.16□□□□□ -2.38
SCFD1-211ENST00000554437 UTRNP46939 3433 aa0.16□□□□□ -2.38
SCFD1-211ENST00000554437 CEP250Q9BV73 2442 aa0.16□□□□□ -2.38
SCFD1-211ENST00000554437 LAMA5O15230 3695 aa0.15□□□□□ -2.38
SCFD1-211ENST00000554437 CSMD2Q7Z408 3487 aa0.15□□□□□ -2.39
SCFD1-211ENST00000554437 FAM186AA6NE01 2351 aa0.14□□□□□ -2.39
SCFD1-211ENST00000554437 LEAP2Q969E1 77 aa0.14□□□□□ -2.39
SCFD1-211ENST00000554437 FREM2Q5SZK8 3169 aa0.14□□□□□ -2.39
SCFD1-211ENST00000554437 NIPBLQ6KC79 2804 aaeCLIP0.14□□□□□ -2.39
SCFD1-211ENST00000554437 DNAH6Q9C0G6 4158 aa0.13□□□□□ -2.39
SCFD1-211ENST00000554437 WDR87Q6ZQQ6 2873 aa0.13□□□□□ -2.39
SCFD1-211ENST00000554437 DNAH12Q6ZR08 3092 aa0.13□□□□□ -2.39
SCFD1-211ENST00000554437 DNAH14Q0VDD8 3507 aa0.13□□□□□ -2.39
SCFD1-211ENST00000554437 KRTAP19-5Q3LI72 72 aa0.13□□□□□ -2.39
SCFD1-211ENST00000554437 SPTBN5Q9NRC6 3674 aaKnown RBP0.13□□□□□ -2.39
SCFD1-211ENST00000554437 LOC400499M0QZD8 3231 aa0.13□□□□□ -2.39
SCFD1-211ENST00000554437 DYNC2H1Q8NCM8 4307 aaKnown RBP0.12□□□□□ -2.39
SCFD1-211ENST00000554437 SMR3BP02814 79 aaPredicted RBP0.12□□□□□ -2.39
SCFD1-211ENST00000554437 LAMA1P25391 3075 aa0.11□□□□□ -2.39
SCFD1-211ENST00000554437 VPS13CQ709C8 3753 aa0.11□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms