RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 KRTAP1-4P0C5Y4 121 aa4.87□□□□□ -1.63
SIX4-202ENST00000554079 DNAH2Q9P225 4427 aa4.87□□□□□ -1.63
SIX4-202ENST00000554079 RYR2Q92736 4967 aa4.86□□□□□ -1.63
SIX4-202ENST00000554079 HYDINQ4G0P3 5121 aa4.86□□□□□ -1.63
SIX4-202ENST00000554079 KRTAP12-1P59990 96 aa4.85□□□□□ -1.63
SIX4-202ENST00000554079 DNAH11Q96DT5 4516 aa4.85□□□□□ -1.63
SIX4-202ENST00000554079 DMBT1Q9UGM3 2413 aaPredicted RBP4.84□□□□□ -1.63
SIX4-202ENST00000554079 PLAC4Q8WY50 150 aa4.83□□□□□ -1.64
SIX4-202ENST00000554079 C9orf92A6NGG3 77 aa4.78□□□□□ -1.64
SIX4-202ENST00000554079 RPS29P62273 56 aaKnown RBP4.76□□□□□ -1.65
SIX4-202ENST00000554079 LCE2CQ5TA81 110 aa4.75□□□□□ -1.65
SIX4-202ENST00000554079 DNAH5Q8TE73 4624 aa4.73□□□□□ -1.65
SIX4-202ENST00000554079 EPPK1P58107 5090 aaKnown RBP4.72□□□□□ -1.65
SIX4-202ENST00000554079 FAT2Q9NYQ8 4349 aa4.68□□□□□ -1.66
SIX4-202ENST00000554079 LRP1BQ9NZR2 4599 aa4.68□□□□□ -1.66
SIX4-202ENST00000554079 VPS13BQ7Z7G8 4022 aa4.67□□□□□ -1.66
SIX4-202ENST00000554079 LCE2AQ5TA79 106 aaPredicted RBP4.67□□□□□ -1.66
SIX4-202ENST00000554079 A0A1B0GVY2 172 aa4.66□□□□□ -1.66
SIX4-202ENST00000554079 BIRC6Q9NR09 4857 aa4.65□□□□□ -1.66
SIX4-202ENST00000554079 PKD1P98161 4303 aa4.65□□□□□ -1.67
SIX4-202ENST00000554079 MYCBP2O75592 4640 aa4.64□□□□□ -1.67
SIX4-202ENST00000554079 KRTAP10-2P60368 255 aa4.63□□□□□ -1.67
SIX4-202ENST00000554079 PKHD1L1Q86WI1 4243 aa4.62□□□□□ -1.67
SIX4-202ENST00000554079 PKHD1P08F94 4074 aa4.62□□□□□ -1.67
SIX4-202ENST00000554079 M0QZ58 72 aa4.61□□□□□ -1.67
SIX4-202ENST00000554079 CAMK2N1Q7Z7J9 78 aa4.61□□□□□ -1.67
SIX4-202ENST00000554079 LORP23490 312 aaPredicted RBP4.6□□□□□ -1.67
SIX4-202ENST00000554079 KRTAP10-1P60331 282 aa4.6□□□□□ -1.67
SIX4-202ENST00000554079 DYNC1H1Q14204 4646 aaKnown RBP4.59□□□□□ -1.67
SIX4-202ENST00000554079 KRTAP10-8P60410 259 aa4.59□□□□□ -1.67
SIX4-202ENST00000554079 PRO2289Q9P1D8 64 aa4.55□□□□□ -1.68
SIX4-202ENST00000554079 KIAA1109Q2LD37 5005 aa4.53□□□□□ -1.68
SIX4-202ENST00000554079 APOBP04114 4563 aaKnown RBP4.52□□□□□ -1.69
SIX4-202ENST00000554079 HERC2O95714 4834 aa4.51□□□□□ -1.69
SIX4-202ENST00000554079 LRP1Q07954 4544 aaKnown RBP4.51□□□□□ -1.69
SIX4-202ENST00000554079 RYR1P21817 5038 aa4.51□□□□□ -1.69
SIX4-202ENST00000554079 HSPG2P98160 4391 aa4.49□□□□□ -1.69
SIX4-202ENST00000554079 SPRR5A0A1B0GTR4 108 aa4.49□□□□□ -1.69
SIX4-202ENST00000554079 PP632Q6XCG6 107 aa4.49□□□□□ -1.69
SIX4-202ENST00000554079 TNXBP22105 4242 aa4.49□□□□□ -1.69
SIX4-202ENST00000554079 SMR3BP02814 79 aaPredicted RBP4.45□□□□□ -1.7
SIX4-202ENST00000554079 Q5VSD8 79 aa4.43□□□□□ -1.7
SIX4-202ENST00000554079 FAT1Q14517 4588 aa4.41□□□□□ -1.7
SIX4-202ENST00000554079 KRTAP4-5Q9BYR2 181 aa4.41□□□□□ -1.7
SIX4-202ENST00000554079 PCLOQ9Y6V0 5065 aa4.4□□□□□ -1.7
SIX4-202ENST00000554079 KRTAP17-1Q9BYP8 105 aa4.39□□□□□ -1.71
SIX4-202ENST00000554079 ABCA13Q86UQ4 5058 aa4.39□□□□□ -1.71
SIX4-202ENST00000554079 FAT3Q8TDW7 4589 aa4.36□□□□□ -1.71
SIX4-202ENST00000554079 INE1O15225 51 aa4.34□□□□□ -1.71
SIX4-202ENST00000554079 R4GN34 69 aa4.34□□□□□ -1.71
SIX4-202ENST00000554079 KRTAP10-4P60372 401 aaPredicted RBP4.31□□□□□ -1.72
SIX4-202ENST00000554079 KRTAP23-1A1A580 65 aa4.24□□□□□ -1.73
SIX4-202ENST00000554079 HERC1Q15751 4861 aa4.21□□□□□ -1.74
SIX4-202ENST00000554079 MT1HL1P0DM35 61 aa4.17□□□□□ -1.74
SIX4-202ENST00000554079 LPAP08519 4548 aa4.13□□□□□ -1.75
SIX4-202ENST00000554079 TNP1P09430 55 aa4.12□□□□□ -1.75
SIX4-202ENST00000554079 FLGP20930 4061 aaPredicted RBP4.1□□□□□ -1.75
SIX4-202ENST00000554079 HMCN2Q8NDA2 5059 aa4.08□□□□□ -1.76
SIX4-202ENST00000554079 UBR4Q5T4S7 5183 aa3.98□□□□□ -1.77
SIX4-202ENST00000554079 LRP2P98164 4655 aa3.97□□□□□ -1.77
SIX4-202ENST00000554079 MUC17Q685J3 4493 aa3.92□□□□□ -1.78
SIX4-202ENST00000554079 LCE3AQ5TA76 89 aa3.89□□□□□ -1.79
SIX4-202ENST00000554079 RNF213Q63HN8 5207 aa3.87□□□□□ -1.79
SIX4-202ENST00000554079 KRTAP19-2Q3LHN2 52 aa3.83□□□□□ -1.8
SIX4-202ENST00000554079 KRTAP10-10P60014 251 aa3.82□□□□□ -1.8
SIX4-202ENST00000554079 MUC2Q02817 5179 aa3.8□□□□□ -1.8
SIX4-202ENST00000554079 KRTAP8-1Q8IUC2 63 aa3.8□□□□□ -1.8
SIX4-202ENST00000554079 KRTAP4-1Q9BYQ7 146 aa3.79□□□□□ -1.8
SIX4-202ENST00000554079 KRTAP10-12P60413 245 aa3.78□□□□□ -1.8
SIX4-202ENST00000554079 LOC100996750A0A140TA64 210 aa3.71□□□□□ -1.81
SIX4-202ENST00000554079 KRTAP4-6Q9BYQ5 205 aa3.71□□□□□ -1.81
SIX4-202ENST00000554079 FAT4Q6V0I7 4981 aa3.69□□□□□ -1.82
SIX4-202ENST00000554079 KRTAP12-3P60328 96 aa3.65□□□□□ -1.82
SIX4-202ENST00000554079 KRTAP10-5P60370 271 aa3.65□□□□□ -1.83
SIX4-202ENST00000554079 SPRR2GQ9BYE4 73 aa3.63□□□□□ -1.83
SIX4-202ENST00000554079 KRTAP19-1Q8IUB9 90 aa3.6□□□□□ -1.83
SIX4-202ENST00000554079 KRTAP19-4Q3LI73 84 aa3.56□□□□□ -1.84
SIX4-202ENST00000554079 M0R2T5 61 aa3.55□□□□□ -1.84
SIX4-202ENST00000554079 MT1HP80294 61 aa3.54□□□□□ -1.84
SIX4-202ENST00000554079 KRTAP2-3P0C7H8 128 aa3.53□□□□□ -1.84
SIX4-202ENST00000554079 KRTAP2-4Q9BYR9 128 aa3.53□□□□□ -1.84
SIX4-202ENST00000554079 KRTAP2-1Q9BYU5 128 aa3.53□□□□□ -1.84
SIX4-202ENST00000554079 KRTAP4-8Q9BYQ9 185 aa3.52□□□□□ -1.85
SIX4-202ENST00000554079 KRTAP4-12Q9BQ66 201 aa3.49□□□□□ -1.85
SIX4-202ENST00000554079 LCE3CQ5T5A8 94 aa3.48□□□□□ -1.85
SIX4-202ENST00000554079 KRTAP9-2Q9BYQ4 174 aa3.48□□□□□ -1.85
SIX4-202ENST00000554079 KRTAP9-6A8MVA2 160 aa3.46□□□□□ -1.86
SIX4-202ENST00000554079 MT1XP80297 61 aa3.44□□□□□ -1.86
SIX4-202ENST00000554079 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.44□□□□□ -1.86
SIX4-202ENST00000554079 KRTAP10-7P60409 375 aaPredicted RBP3.43□□□□□ -1.86
SIX4-202ENST00000554079 KRTAP9-6A0A140TA67 174 aa3.42□□□□□ -1.86
SIX4-202ENST00000554079 KRTAP19-8Q3LI54 63 aa3.39□□□□□ -1.87
SIX4-202ENST00000554079 LCE4AQ5TA78 99 aa3.39□□□□□ -1.87
SIX4-202ENST00000554079 LCE3BQ5TA77 95 aa3.37□□□□□ -1.87
SIX4-202ENST00000554079 KRTAP9-8Q9BYQ0 159 aa3.36□□□□□ -1.87
SIX4-202ENST00000554079 KRTAP9-7A8MTY7 169 aa3.36□□□□□ -1.87
SIX4-202ENST00000554079 MT1BP07438 61 aa3.34□□□□□ -1.87
SIX4-202ENST00000554079 KRTAP19-5Q3LI72 72 aa3.34□□□□□ -1.88
SIX4-202ENST00000554079 FSIP2Q5CZC0 6907 aa3.33□□□□□ -1.88
SIX4-202ENST00000554079 MT2AP02795 61 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms