RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ABCA13Q86UQ4 5058 aa3.28□□□□□ -1.88
LIMA1-203ENST00000547825 C9orf92A6NGG3 77 aa3.28□□□□□ -1.88
LIMA1-203ENST00000547825 APLNQ9ULZ1 77 aa3.28□□□□□ -1.88
LIMA1-203ENST00000547825 A0A0D9SG42 100 aa3.27□□□□□ -1.89
LIMA1-203ENST00000547825 TYMSOSQ8TAI1 123 aa3.27□□□□□ -1.89
LIMA1-203ENST00000547825 KRTAP11-1Q8IUC1 163 aa3.27□□□□□ -1.89
LIMA1-203ENST00000547825 A0A087WTM6 91 aa3.26□□□□□ -1.89
LIMA1-203ENST00000547825 PANO1I0J062 215 aa3.26□□□□□ -1.89
LIMA1-203ENST00000547825 PCLOQ9Y6V0 5065 aa3.26□□□□□ -1.89
LIMA1-203ENST00000547825 KRTAP17-1Q9BYP8 105 aa3.26□□□□□ -1.89
LIMA1-203ENST00000547825 Q6ZR54 194 aa3.25□□□□□ -1.89
LIMA1-203ENST00000547825 A6NN06 94 aa3.24□□□□□ -1.89
LIMA1-203ENST00000547825 Q5W150 140 aa3.24□□□□□ -1.89
LIMA1-203ENST00000547825 IGLV7-43P04211 117 aa3.24□□□□□ -1.89
LIMA1-203ENST00000547825 SMR3BP02814 79 aaPredicted RBP3.23□□□□□ -1.89
LIMA1-203ENST00000547825 TNXBP22105 4242 aa3.22□□□□□ -1.89
LIMA1-203ENST00000547825 KIAA1109Q2LD37 5005 aa3.21□□□□□ -1.9
LIMA1-203ENST00000547825 SPRR1BP22528 89 aa3.21□□□□□ -1.9
LIMA1-203ENST00000547825 Q6ZRN7 208 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-203ENST00000547825 A0A1B0GU33 70 aa3.2□□□□□ -1.9
LIMA1-203ENST00000547825 FAT1Q14517 4588 aa3.19□□□□□ -1.9
LIMA1-203ENST00000547825 LINC00304Q8N9R0 145 aa3.16□□□□□ -1.9
LIMA1-203ENST00000547825 SPATA8Q6RVD6 105 aa3.16□□□□□ -1.9
LIMA1-203ENST00000547825 LCE1DQ5T752 114 aa3.16□□□□□ -1.9
LIMA1-203ENST00000547825 DMAC1Q96GE9 116 aa3.16□□□□□ -1.9
LIMA1-203ENST00000547825 MYCBP2O75592 4640 aa3.15□□□□□ -1.91
LIMA1-203ENST00000547825 HMCN1Q96RW7 5635 aa3.15□□□□□ -1.91
LIMA1-203ENST00000547825 KRTAP4-8A0A0G2JLE6 195 aa3.12□□□□□ -1.91
LIMA1-203ENST00000547825 PLAC8Q9NZF1 115 aa3.12□□□□□ -1.91
LIMA1-203ENST00000547825 NDUFAF8A1L188 74 aa3.11□□□□□ -1.91
LIMA1-203ENST00000547825 KRTAP10-4P60372 401 aaPredicted RBP3.11□□□□□ -1.91
LIMA1-203ENST00000547825 KRTAP16-1A8MUX0 517 aa3.1□□□□□ -1.91
LIMA1-203ENST00000547825 LINC00483Q53H64 154 aa3.09□□□□□ -1.91
LIMA1-203ENST00000547825 Q6ZSA8 131 aa3.09□□□□□ -1.91
LIMA1-203ENST00000547825 KRTAP13-1Q8IUC0 172 aa3.08□□□□□ -1.92
LIMA1-203ENST00000547825 ASB16-AS1Q495Z4 193 aa3.07□□□□□ -1.92
LIMA1-203ENST00000547825 LRP1Q07954 4544 aaKnown RBP3.07□□□□□ -1.92
LIMA1-203ENST00000547825 KRTAP4-5Q9BYR2 181 aa3.06□□□□□ -1.92
LIMA1-203ENST00000547825 KRTAP25-1Q3LHN0 102 aa3.06□□□□□ -1.92
LIMA1-203ENST00000547825 H1FX-AS1Q4G0G2 97 aa3.06□□□□□ -1.92
LIMA1-203ENST00000547825 LCE1AQ5T7P2 110 aa3.06□□□□□ -1.92
LIMA1-203ENST00000547825 KRTAP10-1P60331 282 aa3.05□□□□□ -1.92
LIMA1-203ENST00000547825 RPL37P61927 97 aaKnown RBP3.04□□□□□ -1.92
LIMA1-203ENST00000547825 KRTAP13-3Q3SY46 172 aa3.04□□□□□ -1.92
LIMA1-203ENST00000547825 ROMO1P60602 79 aa3.04□□□□□ -1.92
LIMA1-203ENST00000547825 HERC1Q15751 4861 aa3.03□□□□□ -1.92
LIMA1-203ENST00000547825 KRTAP13-2Q52LG2 175 aa3.03□□□□□ -1.92
LIMA1-203ENST00000547825 HMCN2Q8NDA2 5059 aa3.03□□□□□ -1.93
LIMA1-203ENST00000547825 A8MUU9 505 aa3.02□□□□□ -1.93
LIMA1-203ENST00000547825 KRTAP4-9Q9BYQ8 210 aa3□□□□□ -1.93
LIMA1-203ENST00000547825 LPAP08519 4548 aa3□□□□□ -1.93
LIMA1-203ENST00000547825 MUC17Q685J3 4493 aa3□□□□□ -1.93
LIMA1-203ENST00000547825 C10orf95Q9H7T3 257 aa3□□□□□ -1.93
LIMA1-203ENST00000547825 LUZP6Q538Z0 58 aa2.99□□□□□ -1.93
LIMA1-203ENST00000547825 KRTAP4-11Q9BYQ6 195 aa2.99□□□□□ -1.93
LIMA1-203ENST00000547825 COX6B2Q6YFQ2 88 aa2.98□□□□□ -1.93
LIMA1-203ENST00000547825 H0YAA0 97 aa2.98□□□□□ -1.93
LIMA1-203ENST00000547825 KRTAP4-7Q9BYR0 210 aa2.97□□□□□ -1.93
LIMA1-203ENST00000547825 S4R3F8 94 aa2.97□□□□□ -1.93
LIMA1-203ENST00000547825 CAMK2N1Q7Z7J9 78 aa2.96□□□□□ -1.94
LIMA1-203ENST00000547825 R4GN34 69 aa2.94□□□□□ -1.94
LIMA1-203ENST00000547825 M0QZ58 72 aa2.92□□□□□ -1.94
LIMA1-203ENST00000547825 MT1HL1P0DM35 61 aa2.91□□□□□ -1.94
LIMA1-203ENST00000547825 C20orf166-AS1Q96NR2 134 aa2.89□□□□□ -1.95
LIMA1-203ENST00000547825 KRTAP1-4P0C5Y4 121 aa2.88□□□□□ -1.95
LIMA1-203ENST00000547825 KRTAP4-2Q9BYR5 136 aa2.87□□□□□ -1.95
LIMA1-203ENST00000547825 Q5VSD8 79 aa2.87□□□□□ -1.95
LIMA1-203ENST00000547825 LCE1FQ5T754 118 aa2.85□□□□□ -1.95
LIMA1-203ENST00000547825 KRTAP10-8P60410 259 aa2.85□□□□□ -1.95
LIMA1-203ENST00000547825 P0C880 135 aa2.85□□□□□ -1.95
LIMA1-203ENST00000547825 UBR4Q5T4S7 5183 aa2.83□□□□□ -1.96
LIMA1-203ENST00000547825 KRTAP9-8Q9BYQ0 159 aa2.83□□□□□ -1.96
LIMA1-203ENST00000547825 LRP2P98164 4655 aa2.81□□□□□ -1.96
LIMA1-203ENST00000547825 TPRXLQ17RH7 258 aa2.8□□□□□ -1.96
LIMA1-203ENST00000547825 KRTAP2-2Q9BYT5 123 aa2.8□□□□□ -1.96
LIMA1-203ENST00000547825 MUC5BQ9HC84 5762 aaPredicted RBP2.78□□□□□ -1.96
LIMA1-203ENST00000547825 RNF213Q63HN8 5207 aa2.77□□□□□ -1.97
LIMA1-203ENST00000547825 RPS29P62273 56 aaKnown RBP2.77□□□□□ -1.97
LIMA1-203ENST00000547825 PLAC4Q8WY50 150 aa2.77□□□□□ -1.97
LIMA1-203ENST00000547825 FLGP20930 4061 aaPredicted RBP2.76□□□□□ -1.97
LIMA1-203ENST00000547825 MT3P25713 68 aa2.76□□□□□ -1.97
LIMA1-203ENST00000547825 KRTAP12-2P59991 146 aa2.76□□□□□ -1.97
LIMA1-203ENST00000547825 M0R2T5 61 aa2.76□□□□□ -1.97
LIMA1-203ENST00000547825 KRTAP13-4Q3LI77 160 aa2.75□□□□□ -1.97
LIMA1-203ENST00000547825 MUC2Q02817 5179 aa2.73□□□□□ -1.97
LIMA1-203ENST00000547825 KRTAP10-6P60371 365 aaPredicted RBP2.7□□□□□ -1.98
LIMA1-203ENST00000547825 KRTAP12-1P59990 96 aa2.69□□□□□ -1.98
LIMA1-203ENST00000547825 LCE3CQ5T5A8 94 aa2.67□□□□□ -1.98
LIMA1-203ENST00000547825 TNP1P09430 55 aa2.65□□□□□ -1.99
LIMA1-203ENST00000547825 KRTAP19-2Q3LHN2 52 aa2.65□□□□□ -1.99
LIMA1-203ENST00000547825 FAT4Q6V0I7 4981 aa2.63□□□□□ -1.99
LIMA1-203ENST00000547825 KRTAP10-12P60413 245 aa2.6□□□□□ -1.99
LIMA1-203ENST00000547825 KRTAP4-1Q9BYQ7 146 aa2.59□□□□□ -1.99
LIMA1-203ENST00000547825 PP632Q6XCG6 107 aa2.59□□□□□ -2
LIMA1-203ENST00000547825 KRTAP10-10P60014 251 aa2.47□□□□□ -2.01
LIMA1-203ENST00000547825 LCE3EQ5T5B0 92 aa2.47□□□□□ -2.01
LIMA1-203ENST00000547825 MT1HP80294 61 aa2.46□□□□□ -2.02
LIMA1-203ENST00000547825 KRTAP5-3Q6L8H2 238 aa2.43□□□□□ -2.02
LIMA1-203ENST00000547825 SSPOA2VEC9 5147 aa2.35□□□□□ -2.03
LIMA1-203ENST00000547825 KRTAP10-5P60370 271 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 136.6 ms